Wall clock time and date at job start Tue Mar 31 2020 13:09:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.47084 * 2 1 4 4 C 1.52996 * 109.47254 * 239.99757 * 2 1 3 5 5 C 1.50698 * 109.47050 * 119.99701 * 2 1 3 6 6 C 1.38235 * 120.00058 * 59.99841 * 5 2 1 7 7 C 1.38234 * 120.00020 * 180.02562 * 6 5 2 8 8 C 1.38234 * 119.99964 * 0.02562 * 7 6 5 9 9 C 1.50705 * 119.99922 * 179.97438 * 8 7 6 10 10 C 1.50691 * 109.47491 * 89.99868 * 9 8 7 11 11 O 1.21278 * 120.00028 * 0.02562 * 10 9 8 12 12 N 1.34781 * 120.00407 * 179.97438 * 10 9 8 13 13 C 1.47575 * 134.49576 * 180.02562 * 12 10 9 14 14 C 1.53952 * 86.11883 * 155.35932 * 13 12 10 15 15 O 1.42896 * 113.73968 * 269.15538 * 14 13 12 16 16 C 1.50696 * 113.74096 * 137.94737 * 14 13 12 17 17 H 1.07999 * 120.00319 * 0.02562 * 16 14 13 18 18 C 1.37885 * 119.99717 * 179.97438 * 16 14 13 19 19 N 1.31516 * 119.99913 * 180.02562 * 18 16 14 20 20 Si 1.86798 * 119.99766 * 0.02562 * 18 16 14 21 21 H 1.48500 * 109.47353 * 269.99586 * 20 18 16 22 22 H 1.48501 * 109.47293 * 30.00037 * 20 18 16 23 23 H 1.48504 * 109.46680 * 149.99835 * 20 18 16 24 24 C 1.47581 * 134.48697 * 359.97438 * 12 10 9 25 25 C 1.38228 * 120.00393 * 0.25451 * 8 7 6 26 26 C 1.38240 * 119.99695 * 359.49345 * 25 8 7 27 27 H 1.09000 * 109.47223 * 300.00070 * 1 2 3 28 28 H 1.09001 * 109.46714 * 60.00528 * 1 2 3 29 29 H 1.08998 * 109.46922 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47010 * 180.02562 * 3 2 1 31 31 H 1.09001 * 109.46914 * 299.99350 * 3 2 1 32 32 H 1.08991 * 109.47274 * 59.99611 * 3 2 1 33 33 H 1.08998 * 109.47155 * 299.99857 * 4 2 1 34 34 H 1.09001 * 109.47493 * 60.00192 * 4 2 1 35 35 H 1.09003 * 109.47062 * 180.02562 * 4 2 1 36 36 H 1.08000 * 119.99887 * 0.02562 * 6 5 2 37 37 H 1.08005 * 119.99884 * 179.97438 * 7 6 5 38 38 H 1.09006 * 109.46716 * 329.99634 * 9 8 7 39 39 H 1.09001 * 109.47006 * 210.00257 * 9 8 7 40 40 H 1.08992 * 113.77450 * 41.05752 * 13 12 10 41 41 H 1.09008 * 113.87093 * 269.66964 * 13 12 10 42 42 H 0.96697 * 113.99744 * 178.07719 * 15 14 13 43 43 H 0.97001 * 119.99646 * 179.97438 * 19 18 16 44 44 H 1.09002 * 113.76822 * 90.34347 * 24 12 10 45 45 H 1.08998 * 113.77440 * 318.94601 * 24 12 10 46 46 H 1.08001 * 120.00411 * 179.72917 * 25 8 7 47 47 H 1.08001 * 120.00304 * 180.22951 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0323 -0.7103 1.2305 6 6 1.6983 -2.0338 1.4493 7 6 2.1586 -2.6852 2.5783 8 6 2.9525 -2.0130 3.4887 9 6 3.4539 -2.7231 4.7198 10 6 4.7817 -3.3700 4.4210 11 8 5.2728 -3.2645 3.3172 12 7 5.4240 -4.0650 5.3807 13 6 6.6985 -4.8063 5.4434 14 6 6.6580 -4.5402 6.9592 15 8 7.3175 -3.3341 7.3494 16 6 7.0620 -5.7276 7.7946 17 1 7.3443 -6.6537 7.3160 18 6 7.0722 -5.6313 9.1701 19 7 7.4252 -6.6673 9.8992 20 14 6.5845 -4.0293 9.9978 21 1 7.7883 -3.1785 10.1775 22 1 5.5957 -3.3153 9.1506 23 1 5.9819 -4.3205 11.3234 24 6 5.1355 -4.3894 6.7912 25 6 3.2817 -0.6880 3.2729 26 6 2.8257 -0.0380 2.1413 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0277 0.0005 30 1 3.1300 1.4425 -0.0005 31 1 1.6767 1.9563 -0.8901 32 1 1.6766 1.9564 0.8899 33 1 1.6767 -1.7489 -1.2491 34 1 1.6767 -0.2075 -2.1392 35 1 3.1300 -0.7217 -1.2489 36 1 1.0777 -2.5588 0.7382 37 1 1.8973 -3.7191 2.7495 38 1 2.7356 -3.4876 5.0161 39 1 3.5742 -2.0041 5.5303 40 1 7.5220 -4.3084 4.9319 41 1 6.6092 -5.8603 5.1799 42 1 7.2691 -3.1483 8.2971 43 1 7.4327 -6.5994 10.8668 44 1 4.5845 -5.3205 6.9240 45 1 4.7116 -3.5587 7.3553 46 1 3.8984 -0.1616 3.9864 47 1 3.0860 0.9962 1.9707 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000332497760.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:09:48 Heat of formation + Delta-G solvation = -25.453416 kcal Electronic energy + Delta-G solvation = -26286.132298 eV Core-core repulsion = 22628.108835 eV Total energy + Delta-G solvation = -3658.023463 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.19572 -39.57740 -37.81934 -36.42746 -34.48204 -32.57377 -32.03709 -31.09956 -29.18893 -27.59249 -27.47490 -27.13797 -25.53014 -25.08151 -22.35445 -22.16949 -20.22701 -19.28914 -18.58689 -17.46799 -16.70192 -16.55094 -16.33182 -15.67619 -15.26926 -14.84361 -14.74881 -14.47984 -14.05428 -13.87380 -13.62492 -13.57413 -13.44234 -13.19539 -12.89091 -12.61578 -12.53394 -12.27983 -12.24522 -12.00895 -11.90663 -11.76674 -11.75628 -11.36512 -11.25429 -11.14930 -10.98706 -10.71663 -10.62274 -10.58691 -10.16243 -9.75545 -9.33138 -9.04046 -8.83654 -8.74172 -8.43935 -8.02949 -6.44867 -4.50891 1.36254 1.48515 2.96438 2.97562 3.08830 3.11863 3.36774 3.85069 3.99875 4.40266 4.54008 4.62210 4.77351 4.81555 4.93430 4.94837 5.03571 5.09046 5.15272 5.29046 5.37257 5.39628 5.45725 5.51864 5.57253 5.59513 5.63068 5.63373 5.69073 5.78161 5.83233 6.01227 6.01951 6.04524 6.06156 6.07860 6.12286 6.24182 6.33844 6.43118 6.50541 6.58316 6.63200 6.68254 7.05581 7.17740 7.99678 8.29201 8.47816 8.59141 8.63858 9.12610 10.67367 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.032428 B = 0.002516 C = 0.002475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 863.237202 B =11124.444741 C =11310.315718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.029 4.029 3 C -0.144 4.144 4 C -0.138 4.138 5 C -0.076 4.076 6 C -0.115 4.115 7 C -0.103 4.103 8 C -0.060 4.060 9 C -0.099 4.099 10 C 0.532 3.468 11 O -0.551 6.551 12 N -0.636 5.636 13 C 0.127 3.873 14 C 0.195 3.805 15 O -0.553 6.553 16 C -0.536 4.536 17 H 0.091 0.909 18 C 0.079 3.921 19 N -0.876 5.876 20 Si 0.860 3.140 21 H -0.267 1.267 22 H -0.257 1.257 23 H -0.284 1.284 24 C 0.062 3.938 25 C -0.103 4.103 26 C -0.120 4.120 27 H 0.055 0.945 28 H 0.056 0.944 29 H 0.056 0.944 30 H 0.059 0.941 31 H 0.056 0.944 32 H 0.058 0.942 33 H 0.057 0.943 34 H 0.056 0.944 35 H 0.057 0.943 36 H 0.118 0.882 37 H 0.118 0.882 38 H 0.098 0.902 39 H 0.098 0.902 40 H 0.074 0.926 41 H 0.094 0.906 42 H 0.351 0.649 43 H 0.271 0.729 44 H 0.095 0.905 45 H 0.068 0.932 46 H 0.119 0.881 47 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.341 12.372 -13.804 23.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.029 4.029 3 C -0.201 4.201 4 C -0.196 4.196 5 C -0.076 4.076 6 C -0.133 4.133 7 C -0.121 4.121 8 C -0.061 4.061 9 C -0.139 4.139 10 C 0.321 3.679 11 O -0.429 6.429 12 N -0.370 5.370 13 C 0.005 3.995 14 C 0.154 3.846 15 O -0.364 6.364 16 C -0.574 4.574 17 H 0.109 0.891 18 C -0.126 4.126 19 N -0.511 5.511 20 Si 0.689 3.311 21 H -0.193 1.193 22 H -0.183 1.183 23 H -0.210 1.210 24 C -0.061 4.061 25 C -0.121 4.121 26 C -0.138 4.138 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.078 0.922 31 H 0.075 0.925 32 H 0.077 0.923 33 H 0.076 0.924 34 H 0.075 0.925 35 H 0.076 0.924 36 H 0.136 0.864 37 H 0.136 0.864 38 H 0.117 0.883 39 H 0.116 0.884 40 H 0.093 0.907 41 H 0.112 0.888 42 H 0.203 0.797 43 H 0.081 0.919 44 H 0.113 0.887 45 H 0.086 0.914 46 H 0.137 0.863 47 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -14.030 12.480 -14.971 24.015 hybrid contribution -0.342 0.606 1.370 1.536 sum -14.371 13.085 -13.601 23.722 Atomic orbital electron populations 1.21881 0.93845 1.02009 1.01695 1.19481 0.95540 0.94998 0.92886 1.21959 1.01351 0.95023 1.01752 1.21888 1.01481 1.00173 0.96027 1.19730 0.98081 0.94130 0.95695 1.20845 1.00750 0.94294 0.97406 1.20935 0.97745 0.99308 0.94144 1.19316 0.97152 0.93909 0.95703 1.20616 0.95461 1.00655 0.97148 1.20025 0.85605 0.78958 0.83322 1.90672 1.67918 1.62105 1.22248 1.50126 1.23432 1.50722 1.12761 1.23273 0.84700 0.96007 0.95495 1.20552 0.87162 0.84128 0.92757 1.86482 1.78550 1.44000 1.27359 1.21235 1.47312 0.97781 0.91054 0.89064 1.25018 0.93829 0.96391 0.97360 1.69858 1.45348 1.29612 1.06317 0.87321 0.79802 0.84073 0.79947 1.19298 1.18258 1.21016 1.24611 1.02487 1.00012 0.78962 1.20984 0.99073 0.94300 0.97755 1.21076 0.98462 1.00053 0.94225 0.92539 0.92509 0.92453 0.92189 0.92524 0.92288 0.92435 0.92518 0.92367 0.86424 0.86366 0.88347 0.88399 0.90705 0.88844 0.79690 0.91878 0.88695 0.91363 0.86346 0.85856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.05 8.29 37.16 0.31 -0.74 16 2 C -0.03 -0.26 0.85 -155.66 -0.13 -0.39 16 3 C -0.14 -1.13 7.13 37.16 0.26 -0.87 16 4 C -0.14 -1.18 8.29 37.16 0.31 -0.88 16 5 C -0.08 -0.87 4.76 -104.62 -0.50 -1.37 16 6 C -0.11 -1.37 8.71 -39.58 -0.34 -1.71 16 7 C -0.10 -1.38 9.70 -39.58 -0.38 -1.76 16 8 C -0.06 -0.87 4.37 -104.62 -0.46 -1.33 16 9 C -0.10 -1.45 5.58 -29.04 -0.16 -1.61 16 10 C 0.53 10.14 8.05 -10.99 -0.09 10.05 16 11 O -0.55 -12.26 16.76 5.56 0.09 -12.16 16 12 N -0.64 -12.54 3.61 -178.33 -0.64 -13.18 16 13 C 0.13 2.64 8.23 -2.97 -0.02 2.62 16 14 C 0.19 4.37 1.06 -90.86 -0.10 4.27 16 15 O -0.55 -12.85 13.32 -35.23 -0.47 -13.32 16 16 C -0.54 -13.62 9.20 -34.44 -0.32 -13.94 16 17 H 0.09 2.49 8.06 -52.49 -0.42 2.06 16 18 C 0.08 2.05 5.47 -17.82 -0.10 1.95 16 19 N -0.88 -24.21 13.96 55.43 0.77 -23.43 16 20 Si 0.86 18.52 24.34 -169.99 -4.14 14.38 16 21 H -0.27 -5.65 7.06 56.52 0.40 -5.25 16 22 H -0.26 -5.11 5.28 56.52 0.30 -4.81 16 23 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 24 C 0.06 1.21 7.20 -2.99 -0.02 1.18 16 25 C -0.10 -1.41 9.70 -39.58 -0.38 -1.79 16 26 C -0.12 -1.46 8.98 -39.58 -0.36 -1.82 16 27 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 29 H 0.06 0.43 7.39 -51.93 -0.38 0.05 16 30 H 0.06 0.50 7.52 -51.93 -0.39 0.11 16 31 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.06 0.45 7.51 -51.93 -0.39 0.06 16 33 H 0.06 0.49 7.39 -51.93 -0.38 0.10 16 34 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.12 1.16 7.10 -52.49 -0.37 0.79 16 37 H 0.12 1.42 8.06 -52.48 -0.42 1.00 16 38 H 0.10 1.23 8.09 -51.93 -0.42 0.81 16 39 H 0.10 1.30 8.08 -51.93 -0.42 0.88 16 40 H 0.07 1.58 8.14 -51.93 -0.42 1.16 16 41 H 0.09 1.82 8.09 -51.92 -0.42 1.40 16 42 H 0.35 7.74 3.31 45.56 0.15 7.89 16 43 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 44 H 0.10 1.73 8.09 -51.93 -0.42 1.31 16 45 H 0.07 1.24 6.98 -51.93 -0.36 0.87 16 46 H 0.12 1.51 8.06 -52.49 -0.42 1.09 16 47 H 0.12 1.25 5.90 -52.49 -0.31 0.95 16 LS Contribution 373.79 15.07 5.63 5.63 Total: -1.00 -30.39 373.79 -8.40 -38.79 By element: Atomic # 1 Polarization: 18.59 SS G_CDS: -7.17 Total: 11.43 kcal Atomic # 6 Polarization: -5.64 SS G_CDS: -2.48 Total: -8.13 kcal Atomic # 7 Polarization: -36.75 SS G_CDS: 0.13 Total: -36.61 kcal Atomic # 8 Polarization: -25.11 SS G_CDS: -0.38 Total: -25.49 kcal Atomic # 14 Polarization: 18.52 SS G_CDS: -4.14 Total: 14.38 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -30.39 -8.40 -38.79 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332497760.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.332 kcal (2) G-P(sol) polarization free energy of solvation -30.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.786 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds