Wall clock time and date at job start Tue Mar 31 2020 13:09:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.47084 * 2 1 4 4 C 1.52996 * 109.47254 * 239.99757 * 2 1 3 5 5 C 1.50698 * 109.47050 * 119.99701 * 2 1 3 6 6 C 1.38235 * 120.00058 * 59.99841 * 5 2 1 7 7 C 1.38234 * 120.00020 * 180.02562 * 6 5 2 8 8 C 1.38234 * 119.99964 * 0.02562 * 7 6 5 9 9 C 1.50705 * 119.99922 * 179.97438 * 8 7 6 10 10 C 1.50691 * 109.47491 * 89.99868 * 9 8 7 11 11 O 1.21278 * 120.00028 * 0.02562 * 10 9 8 12 12 N 1.34781 * 120.00407 * 179.97438 * 10 9 8 13 13 C 1.47575 * 134.49576 * 180.02562 * 12 10 9 14 14 C 1.53952 * 86.11883 * 155.35932 * 13 12 10 15 15 O 1.42896 * 113.73968 * 269.15538 * 14 13 12 16 16 C 1.50696 * 113.74096 * 137.94737 * 14 13 12 17 17 H 1.07999 * 120.00319 * 0.02562 * 16 14 13 18 18 C 1.37885 * 119.99717 * 179.97438 * 16 14 13 19 19 N 1.31516 * 119.99913 * 180.02562 * 18 16 14 20 20 Si 1.86798 * 119.99766 * 0.02562 * 18 16 14 21 21 H 1.48500 * 109.47353 * 269.99586 * 20 18 16 22 22 H 1.48501 * 109.47293 * 30.00037 * 20 18 16 23 23 H 1.48504 * 109.46680 * 149.99835 * 20 18 16 24 24 C 1.47581 * 134.48697 * 359.97438 * 12 10 9 25 25 C 1.38228 * 120.00393 * 0.25451 * 8 7 6 26 26 C 1.38240 * 119.99695 * 359.49345 * 25 8 7 27 27 H 1.09000 * 109.47223 * 300.00070 * 1 2 3 28 28 H 1.09001 * 109.46714 * 60.00528 * 1 2 3 29 29 H 1.08998 * 109.46922 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47010 * 180.02562 * 3 2 1 31 31 H 1.09001 * 109.46914 * 299.99350 * 3 2 1 32 32 H 1.08991 * 109.47274 * 59.99611 * 3 2 1 33 33 H 1.08998 * 109.47155 * 299.99857 * 4 2 1 34 34 H 1.09001 * 109.47493 * 60.00192 * 4 2 1 35 35 H 1.09003 * 109.47062 * 180.02562 * 4 2 1 36 36 H 1.08000 * 119.99887 * 0.02562 * 6 5 2 37 37 H 1.08005 * 119.99884 * 179.97438 * 7 6 5 38 38 H 1.09006 * 109.46716 * 329.99634 * 9 8 7 39 39 H 1.09001 * 109.47006 * 210.00257 * 9 8 7 40 40 H 1.08992 * 113.77450 * 41.05752 * 13 12 10 41 41 H 1.09008 * 113.87093 * 269.66964 * 13 12 10 42 42 H 0.96697 * 113.99744 * 178.07719 * 15 14 13 43 43 H 0.97001 * 119.99646 * 179.97438 * 19 18 16 44 44 H 1.09002 * 113.76822 * 90.34347 * 24 12 10 45 45 H 1.08998 * 113.77440 * 318.94601 * 24 12 10 46 46 H 1.08001 * 120.00411 * 179.72917 * 25 8 7 47 47 H 1.08001 * 120.00304 * 180.22951 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0323 -0.7103 1.2305 6 6 1.6983 -2.0338 1.4493 7 6 2.1586 -2.6852 2.5783 8 6 2.9525 -2.0130 3.4887 9 6 3.4539 -2.7231 4.7198 10 6 4.7817 -3.3700 4.4210 11 8 5.2728 -3.2645 3.3172 12 7 5.4240 -4.0650 5.3807 13 6 6.6985 -4.8063 5.4434 14 6 6.6580 -4.5402 6.9592 15 8 7.3175 -3.3341 7.3494 16 6 7.0620 -5.7276 7.7946 17 1 7.3443 -6.6537 7.3160 18 6 7.0722 -5.6313 9.1701 19 7 7.4252 -6.6673 9.8992 20 14 6.5845 -4.0293 9.9978 21 1 7.7883 -3.1785 10.1775 22 1 5.5957 -3.3153 9.1506 23 1 5.9819 -4.3205 11.3234 24 6 5.1355 -4.3894 6.7912 25 6 3.2817 -0.6880 3.2729 26 6 2.8257 -0.0380 2.1413 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0277 0.0005 30 1 3.1300 1.4425 -0.0005 31 1 1.6767 1.9563 -0.8901 32 1 1.6766 1.9564 0.8899 33 1 1.6767 -1.7489 -1.2491 34 1 1.6767 -0.2075 -2.1392 35 1 3.1300 -0.7217 -1.2489 36 1 1.0777 -2.5588 0.7382 37 1 1.8973 -3.7191 2.7495 38 1 2.7356 -3.4876 5.0161 39 1 3.5742 -2.0041 5.5303 40 1 7.5220 -4.3084 4.9319 41 1 6.6092 -5.8603 5.1799 42 1 7.2691 -3.1483 8.2971 43 1 7.4327 -6.5994 10.8668 44 1 4.5845 -5.3205 6.9240 45 1 4.7116 -3.5587 7.3553 46 1 3.8984 -0.1616 3.9864 47 1 3.0860 0.9962 1.9707 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000332497760.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:09:47 Heat of formation + Delta-G solvation = -44.041958 kcal Electronic energy + Delta-G solvation = -26286.938358 eV Core-core repulsion = 22628.108835 eV Total energy + Delta-G solvation = -3658.829523 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.50739 -40.77007 -39.30173 -37.35046 -36.22703 -34.54596 -33.11655 -32.01158 -30.74230 -28.51463 -28.22248 -28.08802 -27.10786 -26.72585 -23.27473 -23.19217 -21.87017 -20.20531 -20.02265 -19.33399 -18.20382 -18.08193 -17.52971 -16.87323 -16.57296 -16.07915 -15.85591 -15.51467 -15.29825 -15.12027 -14.92885 -14.83528 -14.52540 -14.35158 -14.31958 -14.10747 -13.88489 -13.51691 -13.07112 -12.96207 -12.86726 -12.85202 -12.65912 -12.58517 -12.53714 -12.42291 -12.20311 -11.93996 -11.82110 -11.50609 -11.43564 -11.35253 -11.10681 -10.85823 -10.48375 -9.78768 -9.65936 -9.41306 -8.42172 -6.54710 0.39414 0.53340 1.25646 1.28872 1.41677 1.61780 1.90302 2.18407 2.76722 2.84244 3.24455 3.60949 3.69120 3.79681 3.81934 3.88436 4.05006 4.12668 4.14715 4.33871 4.39043 4.40240 4.44512 4.51518 4.59464 4.65854 4.68353 4.68767 4.79408 4.83408 4.84248 4.90582 4.94195 5.01513 5.03600 5.05544 5.17084 5.18656 5.25327 5.29999 5.37595 5.45220 5.58493 5.69287 5.75387 6.04071 6.13215 6.52903 6.66213 6.79465 7.11342 7.14814 8.73250 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.032428 B = 0.002516 C = 0.002475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 863.237202 B =11124.444741 C =11310.315718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.030 4.030 3 C -0.143 4.143 4 C -0.138 4.138 5 C -0.077 4.077 6 C -0.121 4.121 7 C -0.117 4.117 8 C -0.083 4.083 9 C -0.089 4.089 10 C 0.528 3.472 11 O -0.587 6.587 12 N -0.637 5.637 13 C 0.122 3.878 14 C 0.184 3.816 15 O -0.561 6.561 16 C -0.544 4.544 17 H 0.055 0.945 18 C 0.026 3.974 19 N -0.924 5.924 20 Si 0.920 3.080 21 H -0.260 1.260 22 H -0.225 1.225 23 H -0.282 1.282 24 C 0.078 3.922 25 C -0.120 4.120 26 C -0.129 4.129 27 H 0.053 0.947 28 H 0.071 0.929 29 H 0.057 0.943 30 H 0.052 0.948 31 H 0.071 0.929 32 H 0.061 0.939 33 H 0.056 0.944 34 H 0.073 0.927 35 H 0.043 0.957 36 H 0.136 0.864 37 H 0.126 0.874 38 H 0.122 0.878 39 H 0.115 0.885 40 H 0.065 0.935 41 H 0.100 0.900 42 H 0.356 0.644 43 H 0.273 0.727 44 H 0.107 0.893 45 H 0.091 0.909 46 H 0.121 0.879 47 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.684 14.651 -14.397 26.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.030 4.030 3 C -0.200 4.200 4 C -0.195 4.195 5 C -0.077 4.077 6 C -0.139 4.139 7 C -0.135 4.135 8 C -0.083 4.083 9 C -0.128 4.128 10 C 0.320 3.680 11 O -0.469 6.469 12 N -0.371 5.371 13 C -0.001 4.001 14 C 0.143 3.857 15 O -0.373 6.373 16 C -0.581 4.581 17 H 0.073 0.927 18 C -0.175 4.175 19 N -0.562 5.562 20 Si 0.744 3.256 21 H -0.186 1.186 22 H -0.149 1.149 23 H -0.208 1.208 24 C -0.045 4.045 25 C -0.138 4.138 26 C -0.146 4.146 27 H 0.072 0.928 28 H 0.090 0.910 29 H 0.076 0.924 30 H 0.071 0.929 31 H 0.090 0.910 32 H 0.080 0.920 33 H 0.075 0.925 34 H 0.092 0.908 35 H 0.062 0.938 36 H 0.154 0.846 37 H 0.144 0.856 38 H 0.140 0.860 39 H 0.133 0.867 40 H 0.083 0.917 41 H 0.118 0.882 42 H 0.209 0.791 43 H 0.083 0.917 44 H 0.125 0.875 45 H 0.109 0.891 46 H 0.139 0.861 47 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -16.389 14.767 -15.576 27.005 hybrid contribution 0.457 -0.167 1.439 1.519 sum -15.933 14.600 -14.137 25.824 Atomic orbital electron populations 1.21861 0.92657 1.02296 1.02340 1.19557 0.96436 0.95281 0.91712 1.21959 1.00924 0.94512 1.02654 1.21890 1.00570 1.00420 0.96641 1.20093 0.97149 0.94139 0.96277 1.21114 1.00745 0.94683 0.97327 1.21163 0.97908 0.99863 0.94538 1.19418 0.98296 0.94374 0.96246 1.20625 0.92960 1.01307 0.97930 1.20854 0.86657 0.78061 0.82437 1.90651 1.69171 1.63259 1.23787 1.50130 1.22910 1.50788 1.13237 1.23236 0.85574 0.96629 0.94614 1.20598 0.89414 0.82861 0.92798 1.86478 1.79137 1.43818 1.27871 1.21342 1.47334 0.97761 0.91711 0.92703 1.25860 0.93618 1.00117 0.97915 1.70003 1.47142 1.32268 1.06757 0.86321 0.80471 0.79707 0.79069 1.18555 1.14904 1.20850 1.24450 0.99777 1.01519 0.78748 1.21184 0.99527 0.94496 0.98562 1.21342 0.98405 1.00946 0.93950 0.92795 0.90979 0.92379 0.92893 0.91031 0.92028 0.92506 0.90767 0.93780 0.84648 0.85591 0.86012 0.86726 0.91668 0.88239 0.79142 0.91721 0.87517 0.89083 0.86066 0.84288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.71 8.29 71.98 0.60 -1.11 16 2 C -0.03 -0.47 0.85 -52.93 -0.05 -0.51 16 3 C -0.14 -1.94 7.13 71.98 0.51 -1.43 16 4 C -0.14 -2.09 8.29 71.98 0.60 -1.49 16 5 C -0.08 -1.62 4.76 -19.87 -0.09 -1.72 16 6 C -0.12 -2.68 8.71 22.27 0.19 -2.49 16 7 C -0.12 -2.95 9.70 22.27 0.22 -2.73 16 8 C -0.08 -2.27 4.37 -19.87 -0.09 -2.35 16 9 C -0.09 -2.39 5.58 29.10 0.16 -2.23 16 10 C 0.53 19.42 8.05 87.65 0.71 20.13 16 11 O -0.59 -25.97 16.76 -3.02 -0.05 -26.02 16 12 N -0.64 -24.15 3.61 -840.32 -3.03 -27.18 16 13 C 0.12 5.08 8.23 86.48 0.71 5.79 16 14 C 0.18 8.08 1.06 -10.89 -0.01 8.07 16 15 O -0.56 -25.14 13.32 -148.98 -1.98 -27.12 16 16 C -0.54 -28.03 9.20 25.60 0.24 -27.79 16 17 H 0.05 3.13 8.06 -2.91 -0.02 3.11 16 18 C 0.03 1.34 5.47 84.66 0.46 1.81 16 19 N -0.92 -52.18 13.96 21.45 0.30 -51.88 16 20 Si 0.92 36.97 24.34 68.60 1.67 38.64 16 21 H -0.26 -10.14 7.06 99.48 0.70 -9.43 16 22 H -0.23 -7.83 5.28 99.48 0.53 -7.30 16 23 H -0.28 -11.27 7.11 99.48 0.71 -10.56 16 24 C 0.08 2.80 7.20 86.47 0.62 3.43 16 25 C -0.12 -3.14 9.70 22.27 0.22 -2.92 16 26 C -0.13 -2.95 8.98 22.27 0.20 -2.75 16 27 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 28 H 0.07 0.70 8.14 -2.39 -0.02 0.69 16 29 H 0.06 0.73 7.39 -2.39 -0.02 0.71 16 30 H 0.05 0.79 7.52 -2.39 -0.02 0.77 16 31 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 32 H 0.06 0.80 7.51 -2.39 -0.02 0.78 16 33 H 0.06 0.86 7.39 -2.39 -0.02 0.84 16 34 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 35 H 0.04 0.78 8.14 -2.39 -0.02 0.76 16 36 H 0.14 2.42 7.10 -2.91 -0.02 2.40 16 37 H 0.13 2.85 8.06 -2.91 -0.02 2.83 16 38 H 0.12 2.68 8.09 -2.38 -0.02 2.66 16 39 H 0.11 2.69 8.08 -2.39 -0.02 2.68 16 40 H 0.06 2.80 8.14 -2.39 -0.02 2.78 16 41 H 0.10 3.95 8.09 -2.38 -0.02 3.93 16 42 H 0.36 14.76 3.31 -74.06 -0.24 14.51 16 43 H 0.27 14.35 8.31 -92.71 -0.77 13.58 16 44 H 0.11 3.63 8.09 -2.39 -0.02 3.61 16 45 H 0.09 2.90 6.98 -2.39 -0.02 2.88 16 46 H 0.12 2.97 8.06 -2.91 -0.02 2.95 16 47 H 0.14 2.62 5.90 -2.91 -0.02 2.61 16 Total: -1.00 -66.48 373.79 2.63 -63.86 By element: Atomic # 1 Polarization: 39.51 SS G_CDS: 0.53 Total: 40.04 kcal Atomic # 6 Polarization: -15.51 SS G_CDS: 5.19 Total: -10.32 kcal Atomic # 7 Polarization: -76.33 SS G_CDS: -2.73 Total: -79.07 kcal Atomic # 8 Polarization: -51.11 SS G_CDS: -2.03 Total: -53.15 kcal Atomic # 14 Polarization: 36.97 SS G_CDS: 1.67 Total: 38.64 kcal Total: -66.48 2.63 -63.86 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332497760.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.815 kcal (2) G-P(sol) polarization free energy of solvation -66.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.857 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds