Wall clock time and date at job start Tue Mar 31 2020 13:18:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42900 * 109.47061 * 2 1 4 4 C 1.53005 * 109.47012 * 240.00681 * 2 1 3 5 5 C 1.53000 * 109.47175 * 59.99813 * 4 2 1 6 6 C 1.50696 * 109.47316 * 180.02562 * 5 4 2 7 7 C 1.38243 * 119.99848 * 269.72511 * 6 5 4 8 8 C 1.38239 * 119.99841 * 179.76515 * 7 6 5 9 9 C 1.38231 * 119.99769 * 0.50336 * 8 7 6 10 10 C 1.38231 * 120.00506 * 359.75270 * 9 8 7 11 11 C 1.38235 * 119.99850 * 359.97438 * 10 9 8 12 12 C 1.50696 * 109.47759 * 120.00637 * 2 1 3 13 13 O 1.21286 * 119.99976 * 95.04220 * 12 2 1 14 14 N 1.34772 * 119.99912 * 275.05454 * 12 2 1 15 15 C 1.46503 * 120.00092 * 185.04055 * 14 12 2 16 16 C 1.53001 * 109.47053 * 184.77277 * 15 14 12 17 17 C 1.50698 * 115.55015 * 294.79772 * 16 15 14 18 18 H 1.08000 * 120.00242 * 95.19984 * 17 16 15 19 19 C 1.37880 * 120.00076 * 274.92228 * 17 16 15 20 20 N 1.31515 * 119.99802 * 355.42468 * 19 17 16 21 21 Si 1.86795 * 120.00300 * 175.42222 * 19 17 16 22 22 H 1.48495 * 109.47281 * 59.99988 * 21 19 17 23 23 H 1.48499 * 109.47183 * 180.02562 * 21 19 17 24 24 H 1.48506 * 109.46953 * 299.99971 * 21 19 17 25 25 C 1.53001 * 117.49872 * 80.46943 * 16 15 14 26 26 C 1.52999 * 117.49547 * 149.12912 * 16 15 14 27 27 H 1.08999 * 109.47131 * 299.99437 * 1 2 3 28 28 H 1.09002 * 109.47652 * 59.99709 * 1 2 3 29 29 H 1.08999 * 109.46850 * 179.97438 * 1 2 3 30 30 H 0.96701 * 113.99806 * 180.02562 * 3 2 1 31 31 H 1.09000 * 109.47410 * 179.97438 * 4 2 1 32 32 H 1.09006 * 109.47266 * 299.99850 * 4 2 1 33 33 H 1.09005 * 109.47020 * 299.99757 * 5 4 2 34 34 H 1.08999 * 109.47377 * 59.99942 * 5 4 2 35 35 H 1.08001 * 119.99792 * 0.02562 * 7 6 5 36 36 H 1.07999 * 119.99573 * 180.23087 * 8 7 6 37 37 H 1.08001 * 119.99851 * 179.72355 * 9 8 7 38 38 H 1.08000 * 120.00225 * 179.97438 * 10 9 8 39 39 H 1.07997 * 120.00208 * 179.97438 * 11 10 9 40 40 H 0.97003 * 119.99880 * 5.03497 * 14 12 2 41 41 H 1.09005 * 109.46684 * 64.77416 * 15 14 12 42 42 H 1.08998 * 109.46984 * 304.77444 * 15 14 12 43 43 H 0.97006 * 120.00230 * 185.00108 * 20 19 17 44 44 H 1.09000 * 117.49945 * 215.00321 * 25 16 15 45 45 H 1.09002 * 117.49332 * 0.02562 * 25 16 15 46 46 H 1.08994 * 117.50056 * 359.97231 * 26 16 15 47 47 H 1.09000 * 117.50055 * 144.97704 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 2.0400 -0.7211 -1.2494 5 6 1.5299 0.0002 -2.4985 6 6 2.0317 -0.7104 -3.7291 7 6 3.2369 -0.3416 -4.2971 8 6 3.6995 -0.9967 -5.4230 9 6 2.9520 -2.0135 -5.9871 10 6 1.7444 -2.3787 -5.4223 11 6 1.2844 -1.7274 -4.2930 12 6 2.0325 -0.7105 1.2303 13 8 2.3217 -1.8871 1.1755 14 7 2.1602 -0.0385 2.3916 15 6 2.7518 -0.6981 3.5583 16 6 2.6711 0.2358 4.7675 17 6 3.4842 1.5006 4.6673 18 1 3.0220 2.4139 4.3226 19 6 4.8168 1.4934 5.0210 20 7 5.3560 0.4075 5.5305 21 14 5.8564 3.0260 4.7766 22 1 5.2819 4.1449 5.5658 23 1 7.2447 2.7602 5.2318 24 1 5.8693 3.3909 3.3372 25 6 1.3382 0.3102 5.5150 26 6 2.5326 -0.4074 6.1488 27 1 -0.3633 0.5137 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 2.9703 1.4236 -0.0004 31 1 3.1300 -0.7208 -1.2497 32 1 1.6766 -1.7489 -1.2495 33 1 0.4399 0.0002 -2.4985 34 1 1.8932 1.0279 -2.4985 35 1 3.8190 0.4555 -3.8586 36 1 4.6428 -0.7110 -5.8645 37 1 3.3113 -2.5223 -6.8693 38 1 1.1602 -3.1729 -5.8632 39 1 0.3407 -2.0125 -3.8519 40 1 1.8605 0.8819 2.4548 41 1 3.7954 -0.9352 3.3513 42 1 2.2058 -1.6170 3.7718 43 1 6.2730 0.4236 5.8465 44 1 1.0493 1.2740 5.9343 45 1 0.5189 -0.3066 5.1455 46 1 2.4985 -1.4958 6.1960 47 1 3.0298 0.0841 6.9851 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000338266968.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:18:12 Heat of formation + Delta-G solvation = -56.534632 kcal Electronic energy + Delta-G solvation = -26358.300396 eV Core-core repulsion = 22698.929150 eV Total energy + Delta-G solvation = -3659.371246 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.05900 -39.26250 -37.24484 -36.46596 -34.16820 -33.15313 -31.98055 -31.40775 -31.03225 -28.43526 -26.60284 -25.47315 -24.84075 -22.71925 -22.22306 -21.17202 -20.67477 -19.67914 -19.33463 -17.68126 -16.91758 -16.32207 -15.75776 -15.68779 -15.23430 -15.04287 -14.92373 -14.69266 -14.10594 -13.99070 -13.56723 -13.36958 -13.25552 -13.01548 -12.85566 -12.69405 -12.46923 -12.26324 -11.82273 -11.77249 -11.59660 -11.43718 -11.31708 -11.20839 -10.99241 -10.97792 -10.80263 -10.56804 -10.40657 -10.25270 -9.60352 -9.12573 -9.07128 -9.06536 -8.77794 -8.51547 -8.27583 -8.12575 -6.09723 -4.19712 1.20779 1.25010 3.02949 3.24936 3.31222 3.32551 3.56478 3.74269 4.22825 4.33067 4.55497 4.67470 4.83215 4.86666 4.95078 5.01643 5.14123 5.18235 5.21996 5.34121 5.38333 5.42383 5.48669 5.61307 5.75581 5.79770 5.84067 5.91719 5.95678 6.01149 6.15768 6.23837 6.31385 6.31801 6.35685 6.44908 6.52885 6.53476 6.68971 6.82817 6.86437 7.09621 7.21803 7.35703 7.48931 7.57044 7.79073 8.25720 8.31948 8.77815 8.82828 9.47460 10.97317 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.016880 B = 0.002915 C = 0.002689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1658.355219 B = 9604.580403 C =10410.329023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.120 3.880 3 O -0.549 6.549 4 C -0.122 4.122 5 C -0.079 4.079 6 C -0.076 4.076 7 C -0.117 4.117 8 C -0.119 4.119 9 C -0.129 4.129 10 C -0.120 4.120 11 C -0.118 4.118 12 C 0.478 3.522 13 O -0.554 6.554 14 N -0.692 5.692 15 C 0.161 3.839 16 C 0.025 3.975 17 C -0.500 4.500 18 H 0.060 0.940 19 C 0.073 3.927 20 N -0.876 5.876 21 Si 0.891 3.109 22 H -0.277 1.277 23 H -0.288 1.288 24 H -0.275 1.275 25 C -0.211 4.211 26 C -0.142 4.142 27 H 0.068 0.932 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.383 0.617 31 H 0.069 0.931 32 H 0.084 0.916 33 H 0.076 0.924 34 H 0.080 0.920 35 H 0.122 0.878 36 H 0.120 0.880 37 H 0.118 0.882 38 H 0.120 0.880 39 H 0.121 0.879 40 H 0.407 0.593 41 H 0.066 0.934 42 H 0.040 0.960 43 H 0.262 0.738 44 H 0.078 0.922 45 H 0.064 0.936 46 H 0.063 0.937 47 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.442 -1.409 -18.370 19.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.076 3.924 3 O -0.355 6.355 4 C -0.160 4.160 5 C -0.116 4.116 6 C -0.076 4.076 7 C -0.135 4.135 8 C -0.137 4.137 9 C -0.147 4.147 10 C -0.138 4.138 11 C -0.136 4.136 12 C 0.261 3.739 13 O -0.434 6.434 14 N -0.340 5.340 15 C 0.038 3.962 16 C 0.024 3.976 17 C -0.538 4.538 18 H 0.078 0.922 19 C -0.131 4.131 20 N -0.512 5.512 21 Si 0.719 3.281 22 H -0.203 1.203 23 H -0.213 1.213 24 H -0.201 1.201 25 C -0.248 4.248 26 C -0.181 4.181 27 H 0.087 0.913 28 H 0.093 0.907 29 H 0.093 0.907 30 H 0.232 0.768 31 H 0.088 0.912 32 H 0.102 0.898 33 H 0.094 0.906 34 H 0.099 0.901 35 H 0.140 0.860 36 H 0.138 0.862 37 H 0.136 0.864 38 H 0.138 0.862 39 H 0.139 0.861 40 H 0.242 0.758 41 H 0.085 0.915 42 H 0.058 0.942 43 H 0.072 0.928 44 H 0.096 0.904 45 H 0.082 0.918 46 H 0.081 0.919 47 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -7.640 -2.207 -18.355 20.003 hybrid contribution 1.271 0.982 0.087 1.609 sum -6.368 -1.225 -18.267 19.384 Atomic orbital electron populations 1.21773 0.91077 1.02987 1.03696 1.21398 0.96333 0.82516 0.92149 1.86521 1.27544 1.24583 1.96858 1.21993 1.01580 1.00442 0.92023 1.20640 1.01098 0.99239 0.90631 1.19977 0.94806 0.96347 0.96478 1.21111 0.95938 1.00275 0.96224 1.21152 0.99724 0.96469 0.96396 1.21123 0.95339 0.98003 1.00279 1.21138 0.96472 0.99798 0.96373 1.21085 1.00082 0.96190 0.96236 1.21236 0.79221 0.87750 0.85652 1.90669 1.51265 1.15961 1.85492 1.46010 1.60333 1.17136 1.10571 1.21037 0.97195 0.93567 0.84426 1.19026 0.93649 0.96281 0.88655 1.20327 0.93620 0.93653 1.46160 0.92161 1.24994 0.97675 0.95863 0.94576 1.69985 1.14537 1.27211 1.39421 0.86679 0.79410 0.83277 0.78742 1.20274 1.21326 1.20087 1.23016 0.92013 1.01152 1.08606 1.22470 0.99977 0.96512 0.99100 0.91274 0.90699 0.90712 0.76836 0.91206 0.89787 0.90589 0.90133 0.86030 0.86216 0.86364 0.86238 0.86082 0.75808 0.91527 0.94155 0.92814 0.90350 0.91770 0.91864 0.89495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.61 8.47 37.16 0.31 -1.29 16 2 C 0.12 1.62 0.99 -91.77 -0.09 1.53 16 3 O -0.55 -7.07 11.68 -35.23 -0.41 -7.48 16 4 C -0.12 -1.51 3.97 -26.73 -0.11 -1.62 16 5 C -0.08 -0.80 4.85 -27.88 -0.14 -0.94 16 6 C -0.08 -0.81 5.13 -104.62 -0.54 -1.34 16 7 C -0.12 -1.21 9.70 -39.58 -0.38 -1.60 16 8 C -0.12 -1.14 10.05 -39.58 -0.40 -1.54 16 9 C -0.13 -1.18 10.05 -39.59 -0.40 -1.58 16 10 C -0.12 -1.12 10.05 -39.59 -0.40 -1.51 16 11 C -0.12 -1.18 9.70 -39.58 -0.38 -1.57 16 12 C 0.48 8.57 6.69 -10.99 -0.07 8.49 16 13 O -0.55 -11.84 16.08 5.55 0.09 -11.75 16 14 N -0.69 -13.18 5.36 -60.29 -0.32 -13.50 16 15 C 0.16 3.60 5.53 -4.04 -0.02 3.58 16 16 C 0.02 0.57 1.47 -155.66 -0.23 0.34 16 17 C -0.50 -12.71 8.60 -34.44 -0.30 -13.00 16 18 H 0.06 1.51 7.82 -52.49 -0.41 1.10 16 19 C 0.07 1.91 5.43 -17.82 -0.10 1.81 16 20 N -0.88 -24.01 12.65 55.43 0.70 -23.31 16 21 Si 0.89 20.28 29.54 -169.99 -5.02 15.26 16 22 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 23 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 24 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 25 C -0.21 -4.40 9.96 -26.69 -0.27 -4.66 16 26 C -0.14 -3.26 9.14 -26.69 -0.24 -3.51 16 27 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 28 H 0.07 0.73 6.43 -51.93 -0.33 0.40 16 29 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.38 4.31 9.04 45.56 0.41 4.72 16 31 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.08 1.14 7.87 -51.93 -0.41 0.73 16 33 H 0.08 0.70 6.37 -51.93 -0.33 0.37 16 34 H 0.08 0.80 7.62 -51.93 -0.40 0.41 16 35 H 0.12 1.11 8.06 -52.49 -0.42 0.69 16 36 H 0.12 0.91 8.06 -52.49 -0.42 0.48 16 37 H 0.12 0.83 8.06 -52.49 -0.42 0.41 16 38 H 0.12 0.86 8.06 -52.49 -0.42 0.44 16 39 H 0.12 1.04 8.06 -52.49 -0.42 0.62 16 40 H 0.41 7.41 7.86 -40.82 -0.32 7.08 16 41 H 0.07 1.69 8.14 -51.93 -0.42 1.27 16 42 H 0.04 0.91 8.05 -51.93 -0.42 0.49 16 43 H 0.26 6.94 8.32 -40.82 -0.34 6.60 16 44 H 0.08 1.61 8.14 -51.93 -0.42 1.19 16 45 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 46 H 0.06 1.38 8.14 -51.93 -0.42 0.96 16 47 H 0.09 2.13 8.14 -51.93 -0.42 1.71 16 LS Contribution 391.20 15.07 5.90 5.90 Total: -1.00 -29.69 391.20 -9.65 -39.35 By element: Atomic # 1 Polarization: 20.79 SS G_CDS: -6.84 Total: 13.95 kcal Atomic # 6 Polarization: -14.66 SS G_CDS: -3.74 Total: -18.40 kcal Atomic # 7 Polarization: -37.19 SS G_CDS: 0.38 Total: -36.81 kcal Atomic # 8 Polarization: -18.91 SS G_CDS: -0.32 Total: -19.23 kcal Atomic # 14 Polarization: 20.28 SS G_CDS: -5.02 Total: 15.26 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -29.69 -9.65 -39.35 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338266968.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.189 kcal (2) G-P(sol) polarization free energy of solvation -29.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.346 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds