Wall clock time and date at job start Tue Mar 31 2020 13:18:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42900 * 109.47061 * 2 1 4 4 C 1.53005 * 109.47012 * 240.00681 * 2 1 3 5 5 C 1.53000 * 109.47175 * 59.99813 * 4 2 1 6 6 C 1.50696 * 109.47316 * 180.02562 * 5 4 2 7 7 C 1.38243 * 119.99848 * 269.72511 * 6 5 4 8 8 C 1.38239 * 119.99841 * 179.76515 * 7 6 5 9 9 C 1.38231 * 119.99769 * 0.50336 * 8 7 6 10 10 C 1.38231 * 120.00506 * 359.75270 * 9 8 7 11 11 C 1.38235 * 119.99850 * 359.97438 * 10 9 8 12 12 C 1.50696 * 109.47759 * 120.00637 * 2 1 3 13 13 O 1.21286 * 119.99976 * 95.04220 * 12 2 1 14 14 N 1.34772 * 119.99912 * 275.05454 * 12 2 1 15 15 C 1.46503 * 120.00092 * 185.04055 * 14 12 2 16 16 C 1.53001 * 109.47053 * 184.77277 * 15 14 12 17 17 C 1.50698 * 115.55015 * 294.79772 * 16 15 14 18 18 H 1.08000 * 120.00242 * 95.19984 * 17 16 15 19 19 C 1.37880 * 120.00076 * 274.92228 * 17 16 15 20 20 N 1.31515 * 119.99802 * 355.42468 * 19 17 16 21 21 Si 1.86795 * 120.00300 * 175.42222 * 19 17 16 22 22 H 1.48495 * 109.47281 * 59.99988 * 21 19 17 23 23 H 1.48499 * 109.47183 * 180.02562 * 21 19 17 24 24 H 1.48506 * 109.46953 * 299.99971 * 21 19 17 25 25 C 1.53001 * 117.49872 * 80.46943 * 16 15 14 26 26 C 1.52999 * 117.49547 * 149.12912 * 16 15 14 27 27 H 1.08999 * 109.47131 * 299.99437 * 1 2 3 28 28 H 1.09002 * 109.47652 * 59.99709 * 1 2 3 29 29 H 1.08999 * 109.46850 * 179.97438 * 1 2 3 30 30 H 0.96701 * 113.99806 * 180.02562 * 3 2 1 31 31 H 1.09000 * 109.47410 * 179.97438 * 4 2 1 32 32 H 1.09006 * 109.47266 * 299.99850 * 4 2 1 33 33 H 1.09005 * 109.47020 * 299.99757 * 5 4 2 34 34 H 1.08999 * 109.47377 * 59.99942 * 5 4 2 35 35 H 1.08001 * 119.99792 * 0.02562 * 7 6 5 36 36 H 1.07999 * 119.99573 * 180.23087 * 8 7 6 37 37 H 1.08001 * 119.99851 * 179.72355 * 9 8 7 38 38 H 1.08000 * 120.00225 * 179.97438 * 10 9 8 39 39 H 1.07997 * 120.00208 * 179.97438 * 11 10 9 40 40 H 0.97003 * 119.99880 * 5.03497 * 14 12 2 41 41 H 1.09005 * 109.46684 * 64.77416 * 15 14 12 42 42 H 1.08998 * 109.46984 * 304.77444 * 15 14 12 43 43 H 0.97006 * 120.00230 * 185.00108 * 20 19 17 44 44 H 1.09000 * 117.49945 * 215.00321 * 25 16 15 45 45 H 1.09002 * 117.49332 * 0.02562 * 25 16 15 46 46 H 1.08994 * 117.50056 * 359.97231 * 26 16 15 47 47 H 1.09000 * 117.50055 * 144.97704 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 2.0400 -0.7211 -1.2494 5 6 1.5299 0.0002 -2.4985 6 6 2.0317 -0.7104 -3.7291 7 6 3.2369 -0.3416 -4.2971 8 6 3.6995 -0.9967 -5.4230 9 6 2.9520 -2.0135 -5.9871 10 6 1.7444 -2.3787 -5.4223 11 6 1.2844 -1.7274 -4.2930 12 6 2.0325 -0.7105 1.2303 13 8 2.3217 -1.8871 1.1755 14 7 2.1602 -0.0385 2.3916 15 6 2.7518 -0.6981 3.5583 16 6 2.6711 0.2358 4.7675 17 6 3.4842 1.5006 4.6673 18 1 3.0220 2.4139 4.3226 19 6 4.8168 1.4934 5.0210 20 7 5.3560 0.4075 5.5305 21 14 5.8564 3.0260 4.7766 22 1 5.2819 4.1449 5.5658 23 1 7.2447 2.7602 5.2318 24 1 5.8693 3.3909 3.3372 25 6 1.3382 0.3102 5.5150 26 6 2.5326 -0.4074 6.1488 27 1 -0.3633 0.5137 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 2.9703 1.4236 -0.0004 31 1 3.1300 -0.7208 -1.2497 32 1 1.6766 -1.7489 -1.2495 33 1 0.4399 0.0002 -2.4985 34 1 1.8932 1.0279 -2.4985 35 1 3.8190 0.4555 -3.8586 36 1 4.6428 -0.7110 -5.8645 37 1 3.3113 -2.5223 -6.8693 38 1 1.1602 -3.1729 -5.8632 39 1 0.3407 -2.0125 -3.8519 40 1 1.8605 0.8819 2.4548 41 1 3.7954 -0.9352 3.3513 42 1 2.2058 -1.6170 3.7718 43 1 6.2730 0.4236 5.8465 44 1 1.0493 1.2740 5.9343 45 1 0.5189 -0.3066 5.1455 46 1 2.4985 -1.4958 6.1960 47 1 3.0298 0.0841 6.9851 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000338266968.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:18:11 Heat of formation + Delta-G solvation = -73.927247 kcal Electronic energy + Delta-G solvation = -26359.054596 eV Core-core repulsion = 22698.929150 eV Total energy + Delta-G solvation = -3660.125446 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.33975 -40.09986 -38.75816 -37.96058 -35.26498 -34.58986 -33.94951 -32.34380 -31.73147 -29.36334 -28.25655 -27.25950 -25.96373 -23.43111 -23.36152 -22.87988 -21.60272 -21.32950 -20.79036 -19.08446 -18.04145 -17.66001 -16.96450 -16.83880 -16.59774 -16.49597 -16.14169 -15.92179 -15.62153 -15.23476 -14.86556 -14.48824 -14.28087 -14.12210 -13.99742 -13.71415 -13.60993 -13.43938 -13.40097 -13.19037 -12.93832 -12.78828 -12.73484 -12.53825 -12.38605 -12.10124 -12.04049 -11.97917 -11.64144 -11.42859 -11.40576 -10.95191 -10.58527 -10.43444 -10.01840 -9.87271 -9.78922 -9.54308 -8.09308 -6.23968 0.47697 0.53200 1.44476 1.45763 1.52333 1.57725 2.24119 2.43259 2.91287 3.18192 3.18461 3.46337 3.62163 3.75077 3.89103 4.05289 4.15294 4.21482 4.23958 4.34343 4.38211 4.48373 4.52210 4.62899 4.67956 4.70252 4.71345 4.72797 4.84772 4.90258 4.97015 4.98636 5.01928 5.15952 5.18546 5.26233 5.26949 5.35321 5.53265 5.57056 5.61091 5.65525 5.68148 5.77651 5.77785 6.16958 6.36305 6.47234 6.78225 6.84443 7.29779 7.46068 8.97330 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.016880 B = 0.002915 C = 0.002689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1658.355219 B = 9604.580403 C =10410.329023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.133 3.867 3 O -0.547 6.547 4 C -0.114 4.114 5 C -0.067 4.067 6 C -0.092 4.092 7 C -0.134 4.134 8 C -0.131 4.131 9 C -0.136 4.136 10 C -0.128 4.128 11 C -0.131 4.131 12 C 0.475 3.525 13 O -0.591 6.591 14 N -0.689 5.689 15 C 0.177 3.823 16 C 0.005 3.995 17 C -0.505 4.505 18 H 0.063 0.937 19 C 0.025 3.975 20 N -0.908 5.908 21 Si 0.950 3.050 22 H -0.272 1.272 23 H -0.293 1.293 24 H -0.268 1.268 25 C -0.179 4.179 26 C -0.154 4.154 27 H 0.067 0.933 28 H 0.099 0.901 29 H 0.077 0.923 30 H 0.390 0.610 31 H 0.055 0.945 32 H 0.071 0.929 33 H 0.090 0.910 34 H 0.084 0.916 35 H 0.127 0.873 36 H 0.136 0.864 37 H 0.139 0.861 38 H 0.139 0.861 39 H 0.133 0.867 40 H 0.413 0.587 41 H 0.027 0.973 42 H 0.036 0.964 43 H 0.259 0.741 44 H 0.085 0.915 45 H 0.086 0.914 46 H 0.068 0.932 47 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.778 -0.319 -20.099 21.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.089 3.911 3 O -0.354 6.354 4 C -0.152 4.152 5 C -0.104 4.104 6 C -0.092 4.092 7 C -0.152 4.152 8 C -0.148 4.148 9 C -0.154 4.154 10 C -0.146 4.146 11 C -0.149 4.149 12 C 0.261 3.739 13 O -0.472 6.472 14 N -0.338 5.338 15 C 0.053 3.947 16 C 0.004 3.996 17 C -0.542 4.542 18 H 0.081 0.919 19 C -0.176 4.176 20 N -0.546 5.546 21 Si 0.776 3.224 22 H -0.197 1.197 23 H -0.219 1.219 24 H -0.192 1.192 25 C -0.216 4.216 26 C -0.192 4.192 27 H 0.086 0.914 28 H 0.118 0.882 29 H 0.096 0.904 30 H 0.240 0.760 31 H 0.074 0.926 32 H 0.090 0.910 33 H 0.108 0.892 34 H 0.102 0.898 35 H 0.145 0.855 36 H 0.154 0.846 37 H 0.157 0.843 38 H 0.157 0.843 39 H 0.151 0.849 40 H 0.249 0.751 41 H 0.046 0.954 42 H 0.054 0.946 43 H 0.068 0.932 44 H 0.103 0.897 45 H 0.105 0.895 46 H 0.086 0.914 47 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -8.995 -1.085 -20.099 22.047 hybrid contribution 1.690 0.594 0.604 1.890 sum -7.305 -0.491 -19.495 20.825 Atomic orbital electron populations 1.21839 0.89138 1.03651 1.04884 1.21333 0.97570 0.82310 0.89863 1.86523 1.28341 1.23885 1.96630 1.21903 1.00696 0.99963 0.92651 1.20547 1.01795 0.98903 0.89192 1.20094 0.95258 0.96999 0.96872 1.21329 0.96203 1.00843 0.96814 1.21442 1.00527 0.96565 0.96307 1.21460 0.95257 0.97831 1.00867 1.21460 0.96804 1.00157 0.96209 1.21342 1.00674 0.96180 0.96658 1.22162 0.77912 0.87420 0.86386 1.90649 1.52639 1.17851 1.86095 1.45903 1.60332 1.17314 1.10229 1.20594 0.95076 0.93577 0.85482 1.19064 0.95548 0.96023 0.88981 1.20625 0.93941 0.94422 1.45246 0.91856 1.25703 0.98919 0.98370 0.94570 1.70113 1.14583 1.29053 1.40827 0.85737 0.77517 0.80185 0.78932 1.19673 1.21861 1.19245 1.23000 0.91324 1.01272 1.06013 1.22389 1.01677 0.96820 0.98334 0.91426 0.88192 0.90365 0.76038 0.92597 0.91015 0.89199 0.89750 0.85514 0.84638 0.84323 0.84292 0.84929 0.75083 0.95421 0.94564 0.93217 0.89679 0.89536 0.91365 0.91642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.88 8.47 71.98 0.61 -2.27 16 2 C 0.13 3.41 0.99 -11.54 -0.01 3.40 16 3 O -0.55 -13.06 11.68 -148.98 -1.74 -14.80 16 4 C -0.11 -2.72 3.97 30.60 0.12 -2.60 16 5 C -0.07 -1.25 4.85 29.85 0.14 -1.10 16 6 C -0.09 -1.84 5.13 -19.86 -0.10 -1.94 16 7 C -0.13 -2.64 9.70 22.27 0.22 -2.43 16 8 C -0.13 -2.33 10.05 22.27 0.22 -2.10 16 9 C -0.14 -2.26 10.05 22.27 0.22 -2.04 16 10 C -0.13 -2.18 10.05 22.27 0.22 -1.95 16 11 C -0.13 -2.43 9.70 22.27 0.22 -2.22 16 12 C 0.48 16.92 6.69 87.66 0.59 17.51 16 13 O -0.59 -25.58 16.08 -3.05 -0.05 -25.63 16 14 N -0.69 -26.03 5.36 -463.05 -2.48 -28.51 16 15 C 0.18 8.05 5.53 86.38 0.48 8.53 16 16 C 0.00 0.21 1.47 -52.93 -0.08 0.13 16 17 C -0.50 -25.52 8.60 25.60 0.22 -25.30 16 18 H 0.06 3.10 7.82 -2.91 -0.02 3.08 16 19 C 0.03 1.31 5.43 84.66 0.46 1.77 16 20 N -0.91 -50.87 12.65 21.45 0.27 -50.60 16 21 Si 0.95 41.59 29.54 68.60 2.03 43.61 16 22 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 23 H -0.29 -12.95 7.11 99.48 0.71 -12.25 16 24 H -0.27 -11.26 7.11 99.48 0.71 -10.56 16 25 C -0.18 -7.20 9.96 30.62 0.30 -6.89 16 26 C -0.15 -7.09 9.14 30.62 0.28 -6.81 16 27 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 28 H 0.10 1.61 6.43 -2.39 -0.02 1.59 16 29 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 30 H 0.39 8.24 9.04 -74.06 -0.67 7.57 16 31 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 32 H 0.07 1.91 7.87 -2.38 -0.02 1.89 16 33 H 0.09 1.41 6.37 -2.38 -0.02 1.40 16 34 H 0.08 1.51 7.62 -2.39 -0.02 1.49 16 35 H 0.13 2.23 8.06 -2.91 -0.02 2.21 16 36 H 0.14 1.86 8.06 -2.91 -0.02 1.83 16 37 H 0.14 1.64 8.06 -2.91 -0.02 1.61 16 38 H 0.14 1.70 8.06 -2.91 -0.02 1.68 16 39 H 0.13 2.04 8.06 -2.91 -0.02 2.02 16 40 H 0.41 14.58 7.86 -92.71 -0.73 13.85 16 41 H 0.03 1.46 8.14 -2.38 -0.02 1.44 16 42 H 0.04 1.65 8.05 -2.39 -0.02 1.63 16 43 H 0.26 14.04 8.32 -92.70 -0.77 13.27 16 44 H 0.08 3.32 8.14 -2.39 -0.02 3.30 16 45 H 0.09 3.10 8.14 -2.39 -0.02 3.08 16 46 H 0.07 3.01 8.14 -2.39 -0.02 2.99 16 47 H 0.06 3.27 8.14 -2.39 -0.02 3.25 16 Total: -1.00 -63.97 391.20 1.71 -62.26 By element: Atomic # 1 Polarization: 40.41 SS G_CDS: -0.43 Total: 39.98 kcal Atomic # 6 Polarization: -30.42 SS G_CDS: 4.12 Total: -26.31 kcal Atomic # 7 Polarization: -76.90 SS G_CDS: -2.21 Total: -79.11 kcal Atomic # 8 Polarization: -38.65 SS G_CDS: -1.79 Total: -40.43 kcal Atomic # 14 Polarization: 41.59 SS G_CDS: 2.03 Total: 43.61 kcal Total: -63.97 1.71 -62.26 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338266968.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.669 kcal (2) G-P(sol) polarization free energy of solvation -63.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.258 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds