Wall clock time and date at job start Tue Mar 31 2020 13:18:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42899 * 109.47601 * 2 1 4 4 C 1.53009 * 109.46925 * 119.99972 * 2 1 3 5 5 C 1.52993 * 109.46791 * 304.99712 * 4 2 1 6 6 C 1.50703 * 109.46929 * 180.02562 * 5 4 2 7 7 C 1.38238 * 119.99886 * 269.72441 * 6 5 4 8 8 C 1.38237 * 119.99625 * 179.76325 * 7 6 5 9 9 C 1.38232 * 120.00088 * 0.51375 * 8 7 6 10 10 C 1.38232 * 120.00138 * 359.74345 * 9 8 7 11 11 C 1.38232 * 119.99969 * 90.00141 * 6 5 4 12 12 C 1.50701 * 109.47316 * 239.99366 * 2 1 3 13 13 O 1.21281 * 120.00610 * 263.72939 * 12 2 1 14 14 N 1.34779 * 119.99527 * 83.72717 * 12 2 1 15 15 C 1.46501 * 119.99912 * 185.00853 * 14 12 2 16 16 C 1.53002 * 109.47130 * 184.81861 * 15 14 12 17 17 C 1.50696 * 115.55120 * 300.50972 * 16 15 14 18 18 H 1.07995 * 120.00511 * 95.13225 * 17 16 15 19 19 C 1.37885 * 119.99778 * 274.85652 * 17 16 15 20 20 N 1.31516 * 120.00111 * 355.39791 * 19 17 16 21 21 Si 1.86794 * 119.99888 * 175.39482 * 19 17 16 22 22 H 1.48494 * 109.47176 * 90.00400 * 21 19 17 23 23 H 1.48509 * 109.47141 * 210.00174 * 21 19 17 24 24 H 1.48506 * 109.47200 * 330.00119 * 21 19 17 25 25 C 1.53004 * 117.49644 * 86.17979 * 16 15 14 26 26 C 1.53006 * 117.49619 * 154.83722 * 16 15 14 27 27 H 1.08999 * 109.47651 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47217 * 300.00645 * 1 2 3 29 29 H 1.09003 * 109.46826 * 60.00010 * 1 2 3 30 30 H 0.96700 * 114.00401 * 179.97438 * 3 2 1 31 31 H 1.08995 * 109.47229 * 65.00014 * 4 2 1 32 32 H 1.08998 * 109.47126 * 185.00015 * 4 2 1 33 33 H 1.09003 * 109.47294 * 299.99871 * 5 4 2 34 34 H 1.09003 * 109.47444 * 60.00006 * 5 4 2 35 35 H 1.07994 * 119.99904 * 0.02562 * 7 6 5 36 36 H 1.08003 * 119.99512 * 180.23481 * 8 7 6 37 37 H 1.08001 * 119.99808 * 179.71845 * 9 8 7 38 38 H 1.08004 * 120.00212 * 179.97438 * 10 9 8 39 39 H 1.07999 * 120.00200 * 0.02562 * 11 6 5 40 40 H 0.96996 * 120.00357 * 5.00675 * 14 12 2 41 41 H 1.09001 * 109.47169 * 64.81688 * 15 14 12 42 42 H 1.08999 * 109.47209 * 304.82021 * 15 14 12 43 43 H 0.96993 * 120.00365 * 185.00400 * 20 19 17 44 44 H 1.09000 * 117.49545 * 214.99987 * 25 16 15 45 45 H 1.08997 * 117.50045 * 0.02562 * 25 16 15 46 46 H 1.09001 * 117.49787 * 359.97438 * 26 16 15 47 47 H 1.09000 * 117.49723 * 144.97803 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 2.0399 -0.7213 1.2493 5 6 1.4299 -0.0762 2.4953 6 6 1.9326 -0.7862 3.7258 7 6 1.2357 -1.8667 4.2336 8 6 1.6996 -2.5210 5.3595 9 6 2.8545 -2.0882 5.9838 10 6 3.5485 -1.0044 5.4792 11 6 3.0875 -0.3534 4.3501 12 6 2.0323 -0.7105 -1.2304 13 8 2.3427 -1.8814 -1.1703 14 7 2.1367 -0.0447 -2.3976 15 6 2.5196 -0.7602 -3.6173 16 6 2.6813 0.2386 -4.7650 17 6 1.4540 1.0455 -5.1022 18 1 1.3204 2.0289 -4.6763 19 6 0.5043 0.5304 -5.9589 20 7 0.7115 -0.6247 -6.5525 21 14 -1.0766 1.4734 -6.2765 22 1 -0.8858 2.3841 -7.4338 23 1 -2.1723 0.5165 -6.5750 24 1 -1.4285 2.2693 -5.0731 25 6 4.0411 0.9227 -4.9198 26 6 3.6075 -0.1539 -5.9179 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 2.9704 1.4236 0.0004 31 1 1.7516 -1.7715 1.2057 32 1 3.1262 -0.6444 1.2953 33 1 1.7183 0.9741 2.5389 34 1 0.3435 -0.1530 2.4494 35 1 0.3313 -2.2023 3.7482 36 1 1.1572 -3.3675 5.7540 37 1 3.2144 -2.5966 6.8661 38 1 4.4506 -0.6660 5.9672 39 1 3.6293 0.4938 3.9563 40 1 1.9583 0.9081 -2.4300 41 1 1.7456 -1.4842 -3.8720 42 1 3.4633 -1.2801 -3.4525 43 1 0.0782 -0.9527 -7.2099 44 1 4.0479 1.9564 -5.2656 45 1 4.8206 0.6609 -4.2043 46 1 4.1020 -1.1235 -5.8584 47 1 3.3289 0.1712 -6.9203 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000338266969.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:18:18 Heat of formation + Delta-G solvation = -56.153276 kcal Electronic energy + Delta-G solvation = -26338.350343 eV Core-core repulsion = 22678.995634 eV Total energy + Delta-G solvation = -3659.354709 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.06800 -39.27343 -37.25113 -36.47009 -34.22199 -33.15608 -31.98673 -31.39199 -31.04821 -28.38237 -26.59688 -25.48047 -24.86742 -22.73440 -22.22272 -21.16819 -20.67130 -19.69052 -19.34424 -17.67806 -16.93856 -16.31999 -15.82245 -15.64829 -15.19207 -15.07613 -14.97253 -14.66175 -14.16860 -13.86343 -13.58227 -13.44373 -13.27194 -13.00404 -12.86743 -12.65202 -12.44511 -12.24590 -11.79342 -11.75930 -11.60591 -11.42699 -11.33103 -11.23136 -11.01849 -10.96392 -10.80410 -10.54839 -10.42049 -10.25038 -9.59573 -9.12462 -9.08786 -9.06517 -8.78793 -8.52347 -8.28901 -8.09265 -6.09990 -4.19952 1.19236 1.23345 3.02756 3.23863 3.32071 3.34108 3.55911 3.75185 4.21229 4.33236 4.55072 4.66278 4.82092 4.86399 4.93474 5.02744 5.14064 5.18002 5.22966 5.33398 5.37746 5.43208 5.48099 5.62677 5.78459 5.83053 5.86703 5.92523 5.96244 6.01112 6.19778 6.26295 6.30188 6.30798 6.34030 6.45547 6.51451 6.52154 6.68812 6.83747 6.84840 7.09433 7.22228 7.34618 7.47288 7.54529 7.78998 8.27497 8.31642 8.79327 8.82767 9.47486 10.97087 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.021536 B = 0.002717 C = 0.002589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1299.812654 B =10301.585550 C =10812.611847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.121 3.879 3 O -0.549 6.549 4 C -0.122 4.122 5 C -0.080 4.080 6 C -0.076 4.076 7 C -0.117 4.117 8 C -0.119 4.119 9 C -0.129 4.129 10 C -0.120 4.120 11 C -0.118 4.118 12 C 0.477 3.523 13 O -0.555 6.555 14 N -0.690 5.690 15 C 0.161 3.839 16 C 0.024 3.976 17 C -0.500 4.500 18 H 0.061 0.939 19 C 0.073 3.927 20 N -0.875 5.875 21 Si 0.889 3.111 22 H -0.281 1.281 23 H -0.286 1.286 24 H -0.272 1.272 25 C -0.211 4.211 26 C -0.143 4.143 27 H 0.075 0.925 28 H 0.074 0.926 29 H 0.073 0.927 30 H 0.379 0.621 31 H 0.085 0.915 32 H 0.068 0.932 33 H 0.079 0.921 34 H 0.077 0.923 35 H 0.122 0.878 36 H 0.120 0.880 37 H 0.118 0.882 38 H 0.119 0.881 39 H 0.121 0.879 40 H 0.408 0.592 41 H 0.066 0.934 42 H 0.040 0.960 43 H 0.261 0.739 44 H 0.078 0.922 45 H 0.064 0.936 46 H 0.063 0.937 47 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.524 0.720 20.557 20.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.078 3.922 3 O -0.354 6.354 4 C -0.161 4.161 5 C -0.117 4.117 6 C -0.076 4.076 7 C -0.135 4.135 8 C -0.137 4.137 9 C -0.148 4.148 10 C -0.138 4.138 11 C -0.136 4.136 12 C 0.261 3.739 13 O -0.435 6.435 14 N -0.339 5.339 15 C 0.038 3.962 16 C 0.024 3.976 17 C -0.538 4.538 18 H 0.079 0.921 19 C -0.131 4.131 20 N -0.511 5.511 21 Si 0.717 3.283 22 H -0.207 1.207 23 H -0.212 1.212 24 H -0.197 1.197 25 C -0.248 4.248 26 C -0.181 4.181 27 H 0.094 0.906 28 H 0.093 0.907 29 H 0.092 0.908 30 H 0.226 0.774 31 H 0.104 0.896 32 H 0.086 0.914 33 H 0.098 0.902 34 H 0.096 0.904 35 H 0.140 0.860 36 H 0.138 0.862 37 H 0.136 0.864 38 H 0.138 0.862 39 H 0.139 0.861 40 H 0.243 0.757 41 H 0.084 0.916 42 H 0.058 0.942 43 H 0.071 0.929 44 H 0.096 0.904 45 H 0.082 0.918 46 H 0.081 0.919 47 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 1.965 -0.154 20.467 20.562 hybrid contribution -0.289 0.627 -0.436 0.817 sum 1.676 0.473 20.031 20.107 Atomic orbital electron populations 1.21798 0.90840 1.03191 1.03937 1.21429 0.96551 0.82176 0.92079 1.86563 1.26990 1.24979 1.96909 1.22004 1.00827 1.01144 0.92092 1.20675 1.00881 0.99503 0.90683 1.19983 0.95137 0.96003 0.96472 1.21109 1.00188 0.95759 0.96484 1.21149 0.96675 0.99777 0.96122 1.21123 0.95962 0.97421 1.00249 1.21142 0.99800 0.96231 0.96624 1.21086 0.96256 1.00291 0.95973 1.21211 0.79127 0.87795 0.85759 1.90664 1.50333 1.16722 1.85764 1.45991 1.66804 1.13443 1.07646 1.21005 0.98142 0.94475 0.82625 1.19029 0.89198 0.96107 0.93298 1.20349 1.02596 1.01635 1.29176 0.92119 1.24993 0.97964 0.94583 0.95530 1.69989 1.36550 1.18750 1.25801 0.86634 0.83338 0.79633 0.78701 1.20675 1.21184 1.19653 1.23031 1.00010 0.97565 1.04176 1.22466 1.03475 0.96098 0.96061 0.90634 0.90674 0.90844 0.77360 0.89606 0.91362 0.90215 0.90429 0.86022 0.86214 0.86367 0.86249 0.86090 0.75654 0.91580 0.94177 0.92868 0.90363 0.91792 0.91870 0.89492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.82 8.34 37.16 0.31 -1.51 16 2 C 0.12 1.66 1.01 -91.77 -0.09 1.57 16 3 O -0.55 -6.77 11.82 -35.23 -0.42 -7.19 16 4 C -0.12 -1.49 4.08 -26.73 -0.11 -1.60 16 5 C -0.08 -0.81 4.75 -27.88 -0.13 -0.94 16 6 C -0.08 -0.79 5.13 -104.62 -0.54 -1.32 16 7 C -0.12 -1.18 9.70 -39.58 -0.38 -1.56 16 8 C -0.12 -1.10 10.05 -39.58 -0.40 -1.50 16 9 C -0.13 -1.15 10.05 -39.59 -0.40 -1.55 16 10 C -0.12 -1.09 10.05 -39.58 -0.40 -1.48 16 11 C -0.12 -1.16 9.70 -39.58 -0.38 -1.54 16 12 C 0.48 8.62 6.69 -10.98 -0.07 8.55 16 13 O -0.56 -11.87 15.95 5.56 0.09 -11.78 16 14 N -0.69 -13.29 5.38 -60.29 -0.32 -13.61 16 15 C 0.16 3.61 5.55 -4.04 -0.02 3.58 16 16 C 0.02 0.57 1.55 -155.66 -0.24 0.33 16 17 C -0.50 -12.74 8.32 -34.44 -0.29 -13.02 16 18 H 0.06 1.53 7.82 -52.49 -0.41 1.12 16 19 C 0.07 1.93 5.43 -17.82 -0.10 1.83 16 20 N -0.87 -24.07 12.65 55.43 0.70 -23.37 16 21 Si 0.89 20.41 29.54 -169.99 -5.02 15.38 16 22 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 23 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 24 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 25 C -0.21 -4.37 9.95 -26.69 -0.27 -4.64 16 26 C -0.14 -3.27 9.16 -26.69 -0.24 -3.51 16 27 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 28 H 0.07 0.81 6.34 -51.93 -0.33 0.48 16 29 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 30 H 0.38 3.61 9.04 45.56 0.41 4.03 16 31 H 0.09 1.18 7.69 -51.93 -0.40 0.78 16 32 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.08 0.77 7.77 -51.93 -0.40 0.37 16 34 H 0.08 0.74 6.29 -51.93 -0.33 0.41 16 35 H 0.12 1.08 8.06 -52.49 -0.42 0.65 16 36 H 0.12 0.86 8.06 -52.48 -0.42 0.44 16 37 H 0.12 0.80 8.06 -52.49 -0.42 0.37 16 38 H 0.12 0.83 8.06 -52.48 -0.42 0.41 16 39 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16 40 H 0.41 7.55 7.54 -40.82 -0.31 7.24 16 41 H 0.07 1.68 8.14 -51.93 -0.42 1.26 16 42 H 0.04 0.89 8.07 -51.93 -0.42 0.47 16 43 H 0.26 6.93 8.32 -40.82 -0.34 6.59 16 44 H 0.08 1.60 8.14 -51.93 -0.42 1.18 16 45 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 46 H 0.06 1.38 8.14 -51.93 -0.42 0.95 16 47 H 0.09 2.13 8.14 -51.93 -0.42 1.71 16 LS Contribution 390.46 15.07 5.88 5.88 Total: -1.00 -29.90 390.46 -9.66 -39.56 By element: Atomic # 1 Polarization: 20.26 SS G_CDS: -6.82 Total: 13.44 kcal Atomic # 6 Polarization: -14.57 SS G_CDS: -3.75 Total: -18.32 kcal Atomic # 7 Polarization: -37.36 SS G_CDS: 0.38 Total: -36.98 kcal Atomic # 8 Polarization: -18.64 SS G_CDS: -0.33 Total: -18.97 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -5.02 Total: 15.38 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -29.90 -9.66 -39.56 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338266969.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.595 kcal (2) G-P(sol) polarization free energy of solvation -29.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.558 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds