Wall clock time and date at job start Tue Mar 31 2020 13:18:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42899 * 109.47601 * 2 1 4 4 C 1.53009 * 109.46925 * 119.99972 * 2 1 3 5 5 C 1.52993 * 109.46791 * 304.99712 * 4 2 1 6 6 C 1.50703 * 109.46929 * 180.02562 * 5 4 2 7 7 C 1.38238 * 119.99886 * 269.72441 * 6 5 4 8 8 C 1.38237 * 119.99625 * 179.76325 * 7 6 5 9 9 C 1.38232 * 120.00088 * 0.51375 * 8 7 6 10 10 C 1.38232 * 120.00138 * 359.74345 * 9 8 7 11 11 C 1.38232 * 119.99969 * 90.00141 * 6 5 4 12 12 C 1.50701 * 109.47316 * 239.99366 * 2 1 3 13 13 O 1.21281 * 120.00610 * 263.72939 * 12 2 1 14 14 N 1.34779 * 119.99527 * 83.72717 * 12 2 1 15 15 C 1.46501 * 119.99912 * 185.00853 * 14 12 2 16 16 C 1.53002 * 109.47130 * 184.81861 * 15 14 12 17 17 C 1.50696 * 115.55120 * 300.50972 * 16 15 14 18 18 H 1.07995 * 120.00511 * 95.13225 * 17 16 15 19 19 C 1.37885 * 119.99778 * 274.85652 * 17 16 15 20 20 N 1.31516 * 120.00111 * 355.39791 * 19 17 16 21 21 Si 1.86794 * 119.99888 * 175.39482 * 19 17 16 22 22 H 1.48494 * 109.47176 * 90.00400 * 21 19 17 23 23 H 1.48509 * 109.47141 * 210.00174 * 21 19 17 24 24 H 1.48506 * 109.47200 * 330.00119 * 21 19 17 25 25 C 1.53004 * 117.49644 * 86.17979 * 16 15 14 26 26 C 1.53006 * 117.49619 * 154.83722 * 16 15 14 27 27 H 1.08999 * 109.47651 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47217 * 300.00645 * 1 2 3 29 29 H 1.09003 * 109.46826 * 60.00010 * 1 2 3 30 30 H 0.96700 * 114.00401 * 179.97438 * 3 2 1 31 31 H 1.08995 * 109.47229 * 65.00014 * 4 2 1 32 32 H 1.08998 * 109.47126 * 185.00015 * 4 2 1 33 33 H 1.09003 * 109.47294 * 299.99871 * 5 4 2 34 34 H 1.09003 * 109.47444 * 60.00006 * 5 4 2 35 35 H 1.07994 * 119.99904 * 0.02562 * 7 6 5 36 36 H 1.08003 * 119.99512 * 180.23481 * 8 7 6 37 37 H 1.08001 * 119.99808 * 179.71845 * 9 8 7 38 38 H 1.08004 * 120.00212 * 179.97438 * 10 9 8 39 39 H 1.07999 * 120.00200 * 0.02562 * 11 6 5 40 40 H 0.96996 * 120.00357 * 5.00675 * 14 12 2 41 41 H 1.09001 * 109.47169 * 64.81688 * 15 14 12 42 42 H 1.08999 * 109.47209 * 304.82021 * 15 14 12 43 43 H 0.96993 * 120.00365 * 185.00400 * 20 19 17 44 44 H 1.09000 * 117.49545 * 214.99987 * 25 16 15 45 45 H 1.08997 * 117.50045 * 0.02562 * 25 16 15 46 46 H 1.09001 * 117.49787 * 359.97438 * 26 16 15 47 47 H 1.09000 * 117.49723 * 144.97803 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 2.0399 -0.7213 1.2493 5 6 1.4299 -0.0762 2.4953 6 6 1.9326 -0.7862 3.7258 7 6 1.2357 -1.8667 4.2336 8 6 1.6996 -2.5210 5.3595 9 6 2.8545 -2.0882 5.9838 10 6 3.5485 -1.0044 5.4792 11 6 3.0875 -0.3534 4.3501 12 6 2.0323 -0.7105 -1.2304 13 8 2.3427 -1.8814 -1.1703 14 7 2.1367 -0.0447 -2.3976 15 6 2.5196 -0.7602 -3.6173 16 6 2.6813 0.2386 -4.7650 17 6 1.4540 1.0455 -5.1022 18 1 1.3204 2.0289 -4.6763 19 6 0.5043 0.5304 -5.9589 20 7 0.7115 -0.6247 -6.5525 21 14 -1.0766 1.4734 -6.2765 22 1 -0.8858 2.3841 -7.4338 23 1 -2.1723 0.5165 -6.5750 24 1 -1.4285 2.2693 -5.0731 25 6 4.0411 0.9227 -4.9198 26 6 3.6075 -0.1539 -5.9179 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 2.9704 1.4236 0.0004 31 1 1.7516 -1.7715 1.2057 32 1 3.1262 -0.6444 1.2953 33 1 1.7183 0.9741 2.5389 34 1 0.3435 -0.1530 2.4494 35 1 0.3313 -2.2023 3.7482 36 1 1.1572 -3.3675 5.7540 37 1 3.2144 -2.5966 6.8661 38 1 4.4506 -0.6660 5.9672 39 1 3.6293 0.4938 3.9563 40 1 1.9583 0.9081 -2.4300 41 1 1.7456 -1.4842 -3.8720 42 1 3.4633 -1.2801 -3.4525 43 1 0.0782 -0.9527 -7.2099 44 1 4.0479 1.9564 -5.2656 45 1 4.8206 0.6609 -4.2043 46 1 4.1020 -1.1235 -5.8584 47 1 3.3289 0.1712 -6.9203 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000338266969.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:18:17 Heat of formation + Delta-G solvation = -73.784402 kcal Electronic energy + Delta-G solvation = -26339.114886 eV Core-core repulsion = 22678.995634 eV Total energy + Delta-G solvation = -3660.119252 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.34648 -40.09068 -38.75576 -37.96282 -35.28434 -34.60517 -33.96344 -32.33474 -31.72025 -29.32601 -28.25880 -27.28321 -26.00225 -23.41801 -23.34245 -22.87854 -21.59139 -21.34477 -20.78953 -19.07585 -18.05831 -17.65786 -16.96915 -16.80918 -16.64886 -16.46520 -16.14851 -15.91344 -15.59242 -15.19933 -14.91946 -14.46445 -14.27483 -14.15164 -13.98185 -13.71484 -13.58064 -13.51523 -13.40778 -13.19397 -12.94975 -12.82356 -12.75251 -12.51949 -12.36664 -12.08386 -12.03256 -11.97839 -11.62553 -11.42333 -11.40232 -10.96873 -10.57875 -10.43796 -10.02971 -9.84544 -9.77767 -9.53327 -8.10307 -6.24658 0.48807 0.54345 1.41479 1.44728 1.52774 1.56452 2.25950 2.42341 2.92500 3.17454 3.17977 3.46143 3.61979 3.75024 3.90086 4.05706 4.15658 4.22043 4.24734 4.35205 4.37378 4.49174 4.52113 4.63844 4.68934 4.70044 4.71219 4.71702 4.82858 4.88609 4.97380 4.99353 5.02779 5.16599 5.18648 5.26722 5.27013 5.35269 5.51628 5.58489 5.62219 5.66684 5.68993 5.77185 5.78877 6.17998 6.35789 6.51943 6.80215 6.84807 7.30088 7.45452 8.96562 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.021536 B = 0.002717 C = 0.002589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1299.812654 B =10301.585550 C =10812.611847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.137 3.863 3 O -0.546 6.546 4 C -0.113 4.113 5 C -0.070 4.070 6 C -0.092 4.092 7 C -0.134 4.134 8 C -0.130 4.130 9 C -0.136 4.136 10 C -0.129 4.129 11 C -0.130 4.130 12 C 0.475 3.525 13 O -0.590 6.590 14 N -0.688 5.688 15 C 0.176 3.824 16 C 0.003 3.997 17 C -0.503 4.503 18 H 0.063 0.937 19 C 0.025 3.975 20 N -0.908 5.908 21 Si 0.947 3.053 22 H -0.277 1.277 23 H -0.291 1.291 24 H -0.262 1.262 25 C -0.178 4.178 26 C -0.154 4.154 27 H 0.073 0.927 28 H 0.102 0.898 29 H 0.058 0.942 30 H 0.393 0.607 31 H 0.066 0.934 32 H 0.067 0.933 33 H 0.088 0.912 34 H 0.084 0.916 35 H 0.127 0.873 36 H 0.136 0.864 37 H 0.139 0.861 38 H 0.139 0.861 39 H 0.132 0.868 40 H 0.413 0.587 41 H 0.025 0.975 42 H 0.039 0.961 43 H 0.259 0.741 44 H 0.085 0.915 45 H 0.088 0.912 46 H 0.068 0.932 47 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.741 2.233 22.626 22.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.093 3.907 3 O -0.353 6.353 4 C -0.151 4.151 5 C -0.107 4.107 6 C -0.092 4.092 7 C -0.152 4.152 8 C -0.148 4.148 9 C -0.154 4.154 10 C -0.146 4.146 11 C -0.148 4.148 12 C 0.261 3.739 13 O -0.472 6.472 14 N -0.337 5.337 15 C 0.052 3.948 16 C 0.003 3.997 17 C -0.541 4.541 18 H 0.081 0.919 19 C -0.176 4.176 20 N -0.545 5.545 21 Si 0.773 3.227 22 H -0.203 1.203 23 H -0.218 1.218 24 H -0.186 1.186 25 C -0.215 4.215 26 C -0.193 4.193 27 H 0.092 0.908 28 H 0.121 0.879 29 H 0.077 0.923 30 H 0.243 0.757 31 H 0.085 0.915 32 H 0.086 0.914 33 H 0.107 0.893 34 H 0.102 0.898 35 H 0.145 0.855 36 H 0.154 0.846 37 H 0.157 0.843 38 H 0.157 0.843 39 H 0.150 0.850 40 H 0.250 0.750 41 H 0.044 0.956 42 H 0.058 0.942 43 H 0.068 0.932 44 H 0.103 0.897 45 H 0.106 0.894 46 H 0.087 0.913 47 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 2.195 1.397 22.555 22.704 hybrid contribution -0.291 0.131 -1.041 1.089 sum 1.904 1.528 21.513 21.651 Atomic orbital electron populations 1.21854 0.90156 1.03345 1.04594 1.21263 0.96879 0.82459 0.90096 1.86555 1.28477 1.23646 1.96669 1.21901 1.00884 0.99995 0.92314 1.20583 1.01063 0.99607 0.89410 1.20080 0.95760 0.96506 0.96842 1.21329 1.00702 0.96057 0.97082 1.21439 0.97082 1.00266 0.95982 1.21459 0.95727 0.97399 1.00816 1.21458 1.00494 0.96184 0.96504 1.21330 0.96256 1.00848 0.96355 1.22125 0.77780 0.87489 0.86535 1.90644 1.51619 1.18509 1.86410 1.45900 1.67107 1.13530 1.07170 1.20585 0.96653 0.93756 0.83819 1.19067 0.89884 0.97002 0.93788 1.20644 1.03260 1.01736 1.28476 0.91857 1.25699 1.00737 0.95393 0.95742 1.70111 1.37504 1.20278 1.26643 0.85716 0.79772 0.78365 0.78819 1.20312 1.21764 1.18624 1.23016 0.98580 0.97142 1.02738 1.22383 1.04332 0.97339 0.95215 0.90843 0.87897 0.92263 0.75736 0.91487 0.91412 0.89349 0.89769 0.85487 0.84603 0.84342 0.84339 0.84966 0.75028 0.95622 0.94243 0.93216 0.89688 0.89398 0.91341 0.91692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.49 8.34 71.98 0.60 -2.89 16 2 C 0.14 3.56 1.01 -11.54 -0.01 3.55 16 3 O -0.55 -12.17 11.82 -148.98 -1.76 -13.93 16 4 C -0.11 -2.61 4.08 30.60 0.12 -2.48 16 5 C -0.07 -1.27 4.75 29.85 0.14 -1.12 16 6 C -0.09 -1.77 5.13 -19.86 -0.10 -1.88 16 7 C -0.13 -2.54 9.70 22.27 0.22 -2.33 16 8 C -0.13 -2.21 10.05 22.27 0.22 -1.99 16 9 C -0.14 -2.16 10.05 22.27 0.22 -1.93 16 10 C -0.13 -2.08 10.05 22.27 0.22 -1.86 16 11 C -0.13 -2.32 9.70 22.27 0.22 -2.10 16 12 C 0.47 17.03 6.69 87.66 0.59 17.62 16 13 O -0.59 -25.56 15.95 -3.03 -0.05 -25.61 16 14 N -0.69 -26.29 5.38 -463.05 -2.49 -28.78 16 15 C 0.18 8.02 5.55 86.38 0.48 8.50 16 16 C 0.00 0.15 1.55 -52.92 -0.08 0.07 16 17 C -0.50 -25.53 8.32 25.60 0.21 -25.32 16 18 H 0.06 3.11 7.82 -2.91 -0.02 3.09 16 19 C 0.03 1.32 5.43 84.66 0.46 1.78 16 20 N -0.91 -51.07 12.65 21.45 0.27 -50.80 16 21 Si 0.95 41.92 29.54 68.60 2.03 43.95 16 22 H -0.28 -12.04 7.11 99.48 0.71 -11.34 16 23 H -0.29 -13.07 7.11 99.48 0.71 -12.36 16 24 H -0.26 -11.08 7.11 99.48 0.71 -10.37 16 25 C -0.18 -7.09 9.95 30.62 0.30 -6.78 16 26 C -0.15 -7.09 9.16 30.62 0.28 -6.81 16 27 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 28 H 0.10 1.95 6.34 -2.39 -0.02 1.93 16 29 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 30 H 0.39 6.46 9.04 -74.06 -0.67 5.79 16 31 H 0.07 1.83 7.69 -2.39 -0.02 1.81 16 32 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 33 H 0.09 1.47 7.77 -2.39 -0.02 1.45 16 34 H 0.08 1.41 6.29 -2.39 -0.01 1.39 16 35 H 0.13 2.14 8.06 -2.91 -0.02 2.12 16 36 H 0.14 1.75 8.06 -2.91 -0.02 1.72 16 37 H 0.14 1.53 8.06 -2.91 -0.02 1.51 16 38 H 0.14 1.60 8.06 -2.91 -0.02 1.58 16 39 H 0.13 1.94 8.06 -2.91 -0.02 1.92 16 40 H 0.41 14.88 7.54 -92.71 -0.70 14.18 16 41 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 42 H 0.04 1.77 8.07 -2.39 -0.02 1.75 16 43 H 0.26 14.05 8.32 -92.71 -0.77 13.28 16 44 H 0.08 3.29 8.14 -2.39 -0.02 3.27 16 45 H 0.09 3.10 8.14 -2.39 -0.02 3.08 16 46 H 0.07 3.01 8.14 -2.39 -0.02 2.99 16 47 H 0.06 3.24 8.14 -2.39 -0.02 3.22 16 Total: -1.00 -64.52 390.46 1.70 -62.83 By element: Atomic # 1 Polarization: 38.70 SS G_CDS: -0.40 Total: 38.30 kcal Atomic # 6 Polarization: -30.06 SS G_CDS: 4.10 Total: -25.96 kcal Atomic # 7 Polarization: -77.36 SS G_CDS: -2.22 Total: -79.58 kcal Atomic # 8 Polarization: -37.72 SS G_CDS: -1.81 Total: -39.53 kcal Atomic # 14 Polarization: 41.92 SS G_CDS: 2.03 Total: 43.95 kcal Total: -64.52 1.70 -62.83 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338266969.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.956 kcal (2) G-P(sol) polarization free energy of solvation -64.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.829 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds