Wall clock time and date at job start Tue Mar 31 2020 13:24:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53004 * 109.46737 * 2 1 4 4 C 1.53006 * 109.47208 * 119.99376 * 2 1 3 5 5 C 1.52996 * 109.46744 * 89.65377 * 4 2 1 6 6 C 1.53001 * 109.45660 * 185.95099 * 5 4 2 7 7 C 1.53037 * 109.46444 * 65.99096 * 5 4 2 8 8 C 1.53193 * 109.31571 * 178.61279 * 7 5 4 9 9 N 1.46925 * 108.77488 * 54.63353 * 8 7 5 10 10 S 1.65598 * 120.62863 * 126.37085 * 9 8 7 11 11 O 1.42093 * 104.27926 * 26.09171 * 10 9 8 12 12 O 1.42098 * 104.27712 * 153.94930 * 10 9 8 13 13 C 1.81403 * 104.45036 * 270.02043 * 10 9 8 14 14 C 1.52994 * 109.47267 * 180.02562 * 13 10 9 15 15 C 1.50699 * 109.47437 * 180.02562 * 14 13 10 16 16 H 1.08005 * 119.99539 * 359.97438 * 15 14 13 17 17 C 1.37872 * 120.00377 * 180.02562 * 15 14 13 18 18 N 1.31511 * 119.99767 * 359.97438 * 17 15 14 19 19 Si 1.86807 * 120.00065 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.47046 * 59.99708 * 19 17 15 21 21 H 1.48500 * 109.46915 * 179.97438 * 19 17 15 22 22 H 1.48499 * 109.46869 * 299.99451 * 19 17 15 23 23 C 1.46928 * 118.74055 * 306.39394 * 9 8 7 24 24 C 1.53044 * 109.46210 * 305.91608 * 5 4 2 25 25 H 1.09000 * 109.47183 * 53.49593 * 1 2 3 26 26 H 1.09004 * 109.46423 * 173.49272 * 1 2 3 27 27 H 1.08998 * 109.47444 * 293.49175 * 1 2 3 28 28 H 1.09001 * 109.47285 * 239.99661 * 2 1 3 29 29 H 1.08995 * 109.47010 * 180.02562 * 3 2 1 30 30 H 1.09007 * 109.46700 * 299.99414 * 3 2 1 31 31 H 1.09001 * 109.47510 * 59.99799 * 3 2 1 32 32 H 1.09003 * 109.46808 * 329.65534 * 4 2 1 33 33 H 1.09000 * 109.46969 * 209.65375 * 4 2 1 34 34 H 1.09003 * 109.47828 * 59.99999 * 6 5 4 35 35 H 1.09007 * 109.47220 * 180.02562 * 6 5 4 36 36 H 1.09003 * 109.47060 * 299.99794 * 6 5 4 37 37 H 1.09003 * 109.49315 * 298.56285 * 7 5 4 38 38 H 1.08998 * 109.49575 * 58.65849 * 7 5 4 39 39 H 1.09002 * 109.58541 * 294.84500 * 8 7 5 40 40 H 1.09002 * 109.58358 * 174.42037 * 8 7 5 41 41 H 1.09001 * 109.47158 * 300.00111 * 13 10 9 42 42 H 1.08997 * 109.47026 * 59.99994 * 13 10 9 43 43 H 1.09001 * 109.46903 * 299.99998 * 14 13 10 44 44 H 1.08997 * 109.47322 * 59.99906 * 14 13 10 45 45 H 0.97009 * 119.99875 * 179.97438 * 18 17 15 46 46 H 1.09003 * 109.58252 * 293.82088 * 23 9 8 47 47 H 1.08999 * 109.70400 * 173.46932 * 23 9 8 48 48 H 1.08993 * 109.50048 * 301.34155 * 24 5 4 49 49 H 1.09001 * 109.49318 * 61.40509 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0401 -0.7211 1.2494 5 6 2.2018 -2.2122 0.9471 6 6 2.5684 -2.9560 2.2329 7 6 3.3128 -2.4052 -0.0876 8 6 3.4954 -3.9013 -0.3619 9 7 2.1995 -4.4717 -0.7543 10 16 2.0471 -5.3294 -2.1626 11 8 3.3500 -5.8428 -2.4032 12 8 0.9490 -6.1997 -1.9258 13 6 1.6143 -4.0827 -3.4073 14 6 1.4435 -4.7592 -4.7689 15 6 1.0846 -3.7235 -5.8030 16 1 0.9876 -2.6864 -5.5175 17 6 0.8791 -4.0999 -7.1133 18 7 0.9968 -5.3628 -7.4609 19 14 0.4349 -2.8158 -8.3953 20 1 1.5185 -1.8039 -8.4785 21 1 0.2691 -3.4725 -9.7169 22 1 -0.8354 -2.1504 -8.0099 23 6 1.0414 -4.2664 0.1262 24 6 0.8863 -2.7662 0.3951 25 1 -0.3633 0.6113 -0.8260 26 1 -0.3632 -1.0211 -0.1165 27 1 -0.3634 0.4096 0.9425 28 1 1.8934 -0.5139 -0.8899 29 1 3.1299 1.4426 -0.0005 30 1 1.6766 1.9563 -0.8901 31 1 1.6766 1.9565 0.8899 32 1 1.3250 -0.5905 2.0616 33 1 3.0032 -0.3032 1.5424 34 1 1.7776 -2.8184 2.9705 35 1 2.6841 -4.0183 2.0178 36 1 3.5051 -2.5612 2.6266 37 1 3.0409 -1.8963 -1.0124 38 1 4.2441 -1.9894 0.2968 39 1 3.8548 -4.3969 0.5400 40 1 4.2150 -4.0396 -1.1688 41 1 0.6811 -3.5956 -3.1245 42 1 2.4087 -3.3388 -3.4679 43 1 2.3765 -5.2467 -5.0519 44 1 0.6490 -5.5029 -4.7080 45 1 0.8518 -5.6277 -8.3827 46 1 1.2007 -4.7918 1.0679 47 1 0.1409 -4.6462 -0.3563 48 1 0.0907 -2.6075 1.1230 49 1 0.6370 -2.2535 -0.5339 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000341636858.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:24:16 Heat of formation + Delta-G solvation = -103.168243 kcal Electronic energy + Delta-G solvation = -26689.193441 eV Core-core repulsion = 23163.243961 eV Total energy + Delta-G solvation = -3525.949479 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.181 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.07159 -36.63352 -36.25627 -35.39753 -33.87553 -33.21145 -31.25247 -31.14029 -27.97606 -27.19569 -26.94359 -25.58318 -23.38800 -22.83791 -21.49535 -20.41313 -19.18460 -18.02654 -17.32423 -16.47234 -15.91183 -15.64936 -15.44956 -15.01519 -14.58123 -14.55502 -14.43734 -14.25350 -13.88718 -13.37061 -13.32259 -13.16462 -12.51621 -12.46545 -12.38847 -12.12684 -12.07326 -11.79903 -11.77887 -11.74364 -11.55500 -11.43397 -11.33443 -11.11520 -11.06140 -10.95816 -10.88764 -10.76480 -10.50186 -10.36305 -10.35091 -10.25131 -10.13253 -9.71981 -9.27414 -8.66034 -8.49346 -6.11468 -4.17034 0.79705 3.06349 3.27306 3.32199 3.33921 4.31468 4.39750 4.45402 4.48472 4.60670 4.64984 4.77782 4.88872 4.94608 5.10230 5.11773 5.23620 5.29719 5.31375 5.44776 5.48140 5.48712 5.53638 5.61663 5.63862 5.65248 5.69391 5.70303 5.76241 5.77507 5.80585 5.83932 5.90057 5.96554 5.99931 6.12469 6.17494 6.23657 6.25392 6.29904 6.44058 6.51960 6.75096 7.31146 7.37444 7.81217 8.18769 8.86056 9.47597 10.99559 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.012471 B = 0.004423 C = 0.003549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2244.673823 B = 6328.815060 C = 7888.025765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.103 4.103 3 C -0.146 4.146 4 C -0.103 4.103 5 C -0.056 4.056 6 C -0.146 4.146 7 C -0.128 4.128 8 C 0.121 3.879 9 N -1.004 6.004 10 S 2.590 3.410 11 O -0.966 6.966 12 O -0.965 6.965 13 C -0.589 4.589 14 C 0.029 3.971 15 C -0.519 4.519 16 H 0.060 0.940 17 C 0.058 3.942 18 N -0.891 5.891 19 Si 0.899 3.101 20 H -0.275 1.275 21 H -0.285 1.285 22 H -0.275 1.275 23 C 0.119 3.881 24 C -0.132 4.132 25 H 0.051 0.949 26 H 0.069 0.931 27 H 0.050 0.950 28 H 0.078 0.922 29 H 0.052 0.948 30 H 0.052 0.948 31 H 0.050 0.950 32 H 0.061 0.939 33 H 0.061 0.939 34 H 0.052 0.948 35 H 0.063 0.937 36 H 0.052 0.948 37 H 0.072 0.928 38 H 0.072 0.928 39 H 0.069 0.931 40 H 0.089 0.911 41 H 0.118 0.882 42 H 0.118 0.882 43 H 0.032 0.968 44 H 0.032 0.968 45 H 0.265 0.735 46 H 0.068 0.932 47 H 0.089 0.911 48 H 0.073 0.927 49 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.181 10.242 20.171 22.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.122 4.122 3 C -0.204 4.204 4 C -0.140 4.140 5 C -0.056 4.056 6 C -0.203 4.203 7 C -0.167 4.167 8 C -0.004 4.004 9 N -0.840 5.840 10 S 2.689 3.311 11 O -0.956 6.956 12 O -0.956 6.956 13 C -0.722 4.722 14 C -0.010 4.010 15 C -0.559 4.559 16 H 0.078 0.922 17 C -0.144 4.144 18 N -0.529 5.529 19 Si 0.726 3.274 20 H -0.201 1.201 21 H -0.211 1.211 22 H -0.201 1.201 23 C -0.006 4.006 24 C -0.171 4.171 25 H 0.070 0.930 26 H 0.088 0.912 27 H 0.069 0.931 28 H 0.096 0.904 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.069 0.931 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.071 0.929 35 H 0.081 0.919 36 H 0.071 0.929 37 H 0.091 0.909 38 H 0.090 0.910 39 H 0.087 0.913 40 H 0.108 0.892 41 H 0.136 0.864 42 H 0.136 0.864 43 H 0.050 0.950 44 H 0.051 0.949 45 H 0.075 0.925 46 H 0.086 0.914 47 H 0.108 0.892 48 H 0.091 0.909 49 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 2.308 9.141 19.988 22.100 hybrid contribution -0.382 1.429 -0.890 1.726 sum 1.926 10.570 19.099 21.913 Atomic orbital electron populations 1.22211 0.95303 1.02818 1.01355 1.21247 0.95970 0.95910 0.99027 1.21871 1.00708 0.96341 1.01447 1.21769 1.00992 0.93907 0.97354 1.20475 0.95194 0.94794 0.95164 1.21980 1.01044 1.00867 0.96454 1.22078 0.98595 0.96382 0.99628 1.21387 0.84305 0.93120 1.01623 1.57934 1.15173 1.72674 1.38263 1.05700 0.74311 0.76642 0.74462 1.93527 1.39469 1.77654 1.84948 1.93528 1.55460 1.62632 1.83966 1.30495 1.10529 1.16167 1.15034 1.18948 0.98642 0.96514 0.86936 1.20956 1.48563 0.93766 0.92608 0.92151 1.25057 0.95176 0.95521 0.98656 1.69947 1.48715 1.15614 1.18606 0.86545 0.79033 0.81327 0.80456 1.20094 1.21063 1.20089 1.21412 0.88175 0.96085 0.94929 1.22307 0.97080 0.95725 1.01986 0.92979 0.91224 0.93117 0.90405 0.92881 0.92858 0.93089 0.91999 0.92036 0.92853 0.91857 0.92863 0.90900 0.90974 0.91309 0.89232 0.86390 0.86396 0.94953 0.94945 0.92486 0.91378 0.89239 0.90872 0.90193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.37 8.65 37.16 0.32 -1.05 16 2 C -0.10 -0.88 2.31 -90.61 -0.21 -1.09 16 3 C -0.15 -1.18 9.03 37.16 0.34 -0.84 16 4 C -0.10 -0.79 4.09 -26.73 -0.11 -0.90 16 5 C -0.06 -0.47 0.52 -154.47 -0.08 -0.55 16 6 C -0.15 -1.14 7.71 37.16 0.29 -0.86 16 7 C -0.13 -1.20 4.70 -26.61 -0.12 -1.33 16 8 C 0.12 1.39 5.85 -3.71 -0.02 1.37 16 9 N -1.00 -13.58 3.22 -113.52 -0.37 -13.94 16 10 S 2.59 47.33 5.41 -107.50 -0.58 46.75 16 11 O -0.97 -20.24 16.72 -57.54 -0.96 -21.20 16 12 O -0.97 -20.22 16.73 -57.54 -0.96 -21.18 16 13 C -0.59 -11.34 6.12 37.15 0.23 -11.12 16 14 C 0.03 0.73 4.98 -27.89 -0.14 0.60 16 15 C -0.52 -14.37 9.11 -34.44 -0.31 -14.68 16 16 H 0.06 1.58 7.74 -52.48 -0.41 1.17 16 17 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 18 N -0.89 -26.58 13.29 55.43 0.74 -25.84 16 19 Si 0.90 21.22 29.54 -169.99 -5.02 16.20 16 20 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 21 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 22 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 23 C 0.12 1.37 5.84 -3.71 -0.02 1.35 16 24 C -0.13 -1.24 3.30 -26.61 -0.09 -1.32 16 25 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 26 H 0.07 0.60 4.77 -51.93 -0.25 0.35 16 27 H 0.05 0.40 7.96 -51.93 -0.41 -0.02 16 28 H 0.08 0.75 5.58 -51.93 -0.29 0.47 16 29 H 0.05 0.41 8.11 -51.93 -0.42 -0.01 16 30 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.06 0.46 7.72 -51.93 -0.40 0.06 16 33 H 0.06 0.46 7.82 -51.93 -0.41 0.05 16 34 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.06 0.54 4.98 -51.93 -0.26 0.28 16 36 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 37 H 0.07 0.73 6.33 -51.93 -0.33 0.40 16 38 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.07 0.71 6.69 -51.93 -0.35 0.36 16 40 H 0.09 1.10 7.10 -51.93 -0.37 0.73 16 41 H 0.12 2.05 8.14 -51.92 -0.42 1.62 16 42 H 0.12 2.05 8.14 -51.93 -0.42 1.63 16 43 H 0.03 0.88 8.14 -51.93 -0.42 0.46 16 44 H 0.03 0.88 8.14 -51.93 -0.42 0.46 16 45 H 0.27 7.43 8.31 -40.82 -0.34 7.10 16 46 H 0.07 0.70 6.69 -51.93 -0.35 0.36 16 47 H 0.09 1.09 7.10 -51.93 -0.37 0.72 16 48 H 0.07 0.59 7.84 -51.93 -0.41 0.18 16 49 H 0.08 0.79 5.37 -51.93 -0.28 0.51 16 LS Contribution 375.43 15.07 5.66 5.66 Total: -1.00 -33.43 375.43 -10.19 -43.61 By element: Atomic # 1 Polarization: 7.47 SS G_CDS: -8.65 Total: -1.18 kcal Atomic # 6 Polarization: -28.84 SS G_CDS: -0.03 Total: -28.87 kcal Atomic # 7 Polarization: -40.15 SS G_CDS: 0.37 Total: -39.78 kcal Atomic # 8 Polarization: -40.46 SS G_CDS: -1.92 Total: -42.38 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Atomic # 16 Polarization: 47.33 SS G_CDS: -0.58 Total: 46.75 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -33.43 -10.19 -43.61 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000341636858.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.555 kcal (2) G-P(sol) polarization free energy of solvation -33.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.613 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds