Wall clock time and date at job start Tue Mar 31 2020 13:24:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53004 * 109.46737 * 2 1 4 4 C 1.53006 * 109.47208 * 119.99376 * 2 1 3 5 5 C 1.52996 * 109.46744 * 89.65377 * 4 2 1 6 6 C 1.53001 * 109.45660 * 185.95099 * 5 4 2 7 7 C 1.53037 * 109.46444 * 65.99096 * 5 4 2 8 8 C 1.53193 * 109.31571 * 178.61279 * 7 5 4 9 9 N 1.46925 * 108.77488 * 54.63353 * 8 7 5 10 10 S 1.65598 * 120.62863 * 126.37085 * 9 8 7 11 11 O 1.42093 * 104.27926 * 26.09171 * 10 9 8 12 12 O 1.42098 * 104.27712 * 153.94930 * 10 9 8 13 13 C 1.81403 * 104.45036 * 270.02043 * 10 9 8 14 14 C 1.52994 * 109.47267 * 180.02562 * 13 10 9 15 15 C 1.50699 * 109.47437 * 180.02562 * 14 13 10 16 16 H 1.08005 * 119.99539 * 359.97438 * 15 14 13 17 17 C 1.37872 * 120.00377 * 180.02562 * 15 14 13 18 18 N 1.31511 * 119.99767 * 359.97438 * 17 15 14 19 19 Si 1.86807 * 120.00065 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.47046 * 59.99708 * 19 17 15 21 21 H 1.48500 * 109.46915 * 179.97438 * 19 17 15 22 22 H 1.48499 * 109.46869 * 299.99451 * 19 17 15 23 23 C 1.46928 * 118.74055 * 306.39394 * 9 8 7 24 24 C 1.53044 * 109.46210 * 305.91608 * 5 4 2 25 25 H 1.09000 * 109.47183 * 53.49593 * 1 2 3 26 26 H 1.09004 * 109.46423 * 173.49272 * 1 2 3 27 27 H 1.08998 * 109.47444 * 293.49175 * 1 2 3 28 28 H 1.09001 * 109.47285 * 239.99661 * 2 1 3 29 29 H 1.08995 * 109.47010 * 180.02562 * 3 2 1 30 30 H 1.09007 * 109.46700 * 299.99414 * 3 2 1 31 31 H 1.09001 * 109.47510 * 59.99799 * 3 2 1 32 32 H 1.09003 * 109.46808 * 329.65534 * 4 2 1 33 33 H 1.09000 * 109.46969 * 209.65375 * 4 2 1 34 34 H 1.09003 * 109.47828 * 59.99999 * 6 5 4 35 35 H 1.09007 * 109.47220 * 180.02562 * 6 5 4 36 36 H 1.09003 * 109.47060 * 299.99794 * 6 5 4 37 37 H 1.09003 * 109.49315 * 298.56285 * 7 5 4 38 38 H 1.08998 * 109.49575 * 58.65849 * 7 5 4 39 39 H 1.09002 * 109.58541 * 294.84500 * 8 7 5 40 40 H 1.09002 * 109.58358 * 174.42037 * 8 7 5 41 41 H 1.09001 * 109.47158 * 300.00111 * 13 10 9 42 42 H 1.08997 * 109.47026 * 59.99994 * 13 10 9 43 43 H 1.09001 * 109.46903 * 299.99998 * 14 13 10 44 44 H 1.08997 * 109.47322 * 59.99906 * 14 13 10 45 45 H 0.97009 * 119.99875 * 179.97438 * 18 17 15 46 46 H 1.09003 * 109.58252 * 293.82088 * 23 9 8 47 47 H 1.08999 * 109.70400 * 173.46932 * 23 9 8 48 48 H 1.08993 * 109.50048 * 301.34155 * 24 5 4 49 49 H 1.09001 * 109.49318 * 61.40509 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0401 -0.7211 1.2494 5 6 2.2018 -2.2122 0.9471 6 6 2.5684 -2.9560 2.2329 7 6 3.3128 -2.4052 -0.0876 8 6 3.4954 -3.9013 -0.3619 9 7 2.1995 -4.4717 -0.7543 10 16 2.0471 -5.3294 -2.1626 11 8 3.3500 -5.8428 -2.4032 12 8 0.9490 -6.1997 -1.9258 13 6 1.6143 -4.0827 -3.4073 14 6 1.4435 -4.7592 -4.7689 15 6 1.0846 -3.7235 -5.8030 16 1 0.9876 -2.6864 -5.5175 17 6 0.8791 -4.0999 -7.1133 18 7 0.9968 -5.3628 -7.4609 19 14 0.4349 -2.8158 -8.3953 20 1 1.5185 -1.8039 -8.4785 21 1 0.2691 -3.4725 -9.7169 22 1 -0.8354 -2.1504 -8.0099 23 6 1.0414 -4.2664 0.1262 24 6 0.8863 -2.7662 0.3951 25 1 -0.3633 0.6113 -0.8260 26 1 -0.3632 -1.0211 -0.1165 27 1 -0.3634 0.4096 0.9425 28 1 1.8934 -0.5139 -0.8899 29 1 3.1299 1.4426 -0.0005 30 1 1.6766 1.9563 -0.8901 31 1 1.6766 1.9565 0.8899 32 1 1.3250 -0.5905 2.0616 33 1 3.0032 -0.3032 1.5424 34 1 1.7776 -2.8184 2.9705 35 1 2.6841 -4.0183 2.0178 36 1 3.5051 -2.5612 2.6266 37 1 3.0409 -1.8963 -1.0124 38 1 4.2441 -1.9894 0.2968 39 1 3.8548 -4.3969 0.5400 40 1 4.2150 -4.0396 -1.1688 41 1 0.6811 -3.5956 -3.1245 42 1 2.4087 -3.3388 -3.4679 43 1 2.3765 -5.2467 -5.0519 44 1 0.6490 -5.5029 -4.7080 45 1 0.8518 -5.6277 -8.3827 46 1 1.2007 -4.7918 1.0679 47 1 0.1409 -4.6462 -0.3563 48 1 0.0907 -2.6075 1.1230 49 1 0.6370 -2.2535 -0.5339 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000341636858.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:24:14 Heat of formation + Delta-G solvation = -124.212101 kcal Electronic energy + Delta-G solvation = -26690.105971 eV Core-core repulsion = 23163.243961 eV Total energy + Delta-G solvation = -3526.862010 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.181 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.83509 -38.23254 -37.15280 -36.92170 -35.90092 -34.01948 -33.12976 -32.10139 -28.72185 -27.90558 -27.62496 -27.51335 -24.23270 -23.98831 -23.17755 -21.07004 -20.32169 -19.38624 -18.72563 -18.07985 -17.26419 -17.05260 -16.55156 -16.33803 -15.83332 -15.66306 -15.32529 -15.09826 -15.06263 -14.61906 -14.46084 -14.10168 -13.91606 -13.73782 -13.44167 -13.21301 -13.20301 -13.06769 -12.91709 -12.81140 -12.80261 -12.74008 -12.49879 -12.41881 -12.24964 -12.17667 -12.12806 -11.99272 -11.76917 -11.53587 -11.48759 -11.28790 -11.01397 -10.91653 -10.83532 -10.64731 -9.75894 -8.26351 -6.40696 -0.69988 1.39840 1.43381 1.51585 1.75757 2.37470 2.85678 3.06814 3.17450 3.64734 3.82218 3.88460 3.93235 4.07390 4.07980 4.23426 4.27928 4.31648 4.39665 4.47681 4.56351 4.71231 4.73688 4.74286 4.85479 4.88333 4.93135 4.95415 4.99449 5.01092 5.08244 5.12709 5.15343 5.22214 5.23257 5.26082 5.26420 5.34676 5.40139 5.47421 5.55906 5.59540 5.61420 5.67241 5.75312 5.76799 6.05550 6.72373 7.29513 8.85792 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.012471 B = 0.004423 C = 0.003549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2244.673823 B = 6328.815060 C = 7888.025765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.104 4.104 3 C -0.145 4.145 4 C -0.095 4.095 5 C -0.053 4.053 6 C -0.144 4.144 7 C -0.126 4.126 8 C 0.113 3.887 9 N -0.992 5.992 10 S 2.611 3.389 11 O -0.996 6.996 12 O -0.995 6.995 13 C -0.586 4.586 14 C 0.022 3.978 15 C -0.538 4.538 16 H 0.074 0.926 17 C -0.002 4.002 18 N -0.935 5.935 19 Si 0.973 3.027 20 H -0.263 1.263 21 H -0.284 1.284 22 H -0.263 1.263 23 C 0.111 3.889 24 C -0.130 4.130 25 H 0.042 0.958 26 H 0.068 0.932 27 H 0.059 0.941 28 H 0.065 0.935 29 H 0.055 0.945 30 H 0.045 0.955 31 H 0.057 0.943 32 H 0.070 0.930 33 H 0.068 0.932 34 H 0.062 0.938 35 H 0.054 0.946 36 H 0.061 0.939 37 H 0.066 0.934 38 H 0.091 0.909 39 H 0.086 0.914 40 H 0.079 0.921 41 H 0.138 0.862 42 H 0.137 0.863 43 H 0.004 0.996 44 H 0.004 0.996 45 H 0.267 0.733 46 H 0.085 0.915 47 H 0.079 0.921 48 H 0.092 0.908 49 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.162 12.734 21.973 25.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.123 4.123 3 C -0.203 4.203 4 C -0.132 4.132 5 C -0.053 4.053 6 C -0.201 4.201 7 C -0.165 4.165 8 C -0.012 4.012 9 N -0.831 5.831 10 S 2.709 3.291 11 O -0.986 6.986 12 O -0.986 6.986 13 C -0.718 4.718 14 C -0.017 4.017 15 C -0.577 4.577 16 H 0.093 0.907 17 C -0.201 4.201 18 N -0.574 5.574 19 Si 0.796 3.204 20 H -0.188 1.188 21 H -0.209 1.209 22 H -0.187 1.187 23 C -0.013 4.013 24 C -0.168 4.168 25 H 0.061 0.939 26 H 0.086 0.914 27 H 0.078 0.922 28 H 0.083 0.917 29 H 0.074 0.926 30 H 0.064 0.936 31 H 0.076 0.924 32 H 0.088 0.912 33 H 0.087 0.913 34 H 0.081 0.919 35 H 0.073 0.927 36 H 0.080 0.920 37 H 0.085 0.915 38 H 0.109 0.891 39 H 0.104 0.896 40 H 0.097 0.903 41 H 0.156 0.844 42 H 0.156 0.844 43 H 0.023 0.977 44 H 0.023 0.977 45 H 0.076 0.924 46 H 0.103 0.897 47 H 0.097 0.903 48 H 0.110 0.890 49 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 2.287 11.646 21.791 24.813 hybrid contribution -0.357 0.639 -1.353 1.538 sum 1.930 12.286 20.438 23.924 Atomic orbital electron populations 1.22218 0.95428 1.02607 1.01497 1.21244 0.95882 0.96168 0.98977 1.21859 1.00903 0.96041 1.01460 1.21699 1.01590 0.92941 0.97018 1.20460 0.94152 0.95509 0.95177 1.21957 1.01899 1.00169 0.96116 1.22091 1.00007 0.94452 0.99908 1.21660 0.82823 0.94832 1.01851 1.57554 1.16907 1.72366 1.36307 1.04753 0.72987 0.76349 0.74990 1.93480 1.40699 1.78521 1.85880 1.93481 1.56481 1.63986 1.84602 1.30389 1.12448 1.16771 1.12200 1.18798 0.96185 0.96157 0.90517 1.21458 1.48121 0.94745 0.93405 0.90735 1.26105 0.94935 0.97735 1.01301 1.70099 1.50030 1.18041 1.19235 0.85382 0.79381 0.78469 0.77142 1.18768 1.20891 1.18748 1.21687 0.86806 0.98078 0.94772 1.22325 0.98372 0.93759 1.02380 0.93871 0.91370 0.92203 0.91711 0.92561 0.93597 0.92356 0.91150 0.91287 0.91939 0.92683 0.91953 0.91543 0.89077 0.89631 0.90285 0.84407 0.84433 0.97748 0.97727 0.92374 0.89721 0.90260 0.88985 0.90818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.42 8.65 71.98 0.62 -1.80 16 2 C -0.10 -1.54 2.31 -10.79 -0.02 -1.57 16 3 C -0.15 -2.03 9.03 71.98 0.65 -1.38 16 4 C -0.10 -1.16 4.09 30.59 0.13 -1.03 16 5 C -0.05 -0.74 0.52 -52.16 -0.03 -0.76 16 6 C -0.14 -1.76 7.71 71.98 0.56 -1.20 16 7 C -0.13 -2.06 4.70 30.67 0.14 -1.91 16 8 C 0.11 2.41 5.85 86.36 0.50 2.92 16 9 N -0.99 -25.85 3.22 -513.06 -1.65 -27.51 16 10 S 2.61 96.96 5.41 -56.49 -0.31 96.66 16 11 O -1.00 -42.74 16.72 -127.65 -2.13 -44.87 16 12 O -1.00 -42.68 16.73 -127.65 -2.14 -44.82 16 13 C -0.59 -22.80 6.12 71.98 0.44 -22.36 16 14 C 0.02 1.19 4.98 29.85 0.15 1.34 16 15 C -0.54 -30.14 9.11 25.60 0.23 -29.90 16 16 H 0.07 3.84 7.74 -2.91 -0.02 3.82 16 17 C 0.00 -0.13 5.46 84.65 0.46 0.33 16 18 N -0.93 -57.38 13.29 21.44 0.28 -57.09 16 19 Si 0.97 43.46 29.54 68.60 2.03 45.49 16 20 H -0.26 -11.15 7.11 99.48 0.71 -10.44 16 21 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 22 H -0.26 -11.13 7.11 99.48 0.71 -10.43 16 23 C 0.11 2.37 5.84 86.36 0.50 2.87 16 24 C -0.13 -2.11 3.30 30.67 0.10 -2.01 16 25 H 0.04 0.71 8.14 -2.39 -0.02 0.69 16 26 H 0.07 1.04 4.77 -2.38 -0.01 1.03 16 27 H 0.06 0.78 7.96 -2.39 -0.02 0.76 16 28 H 0.06 1.14 5.58 -2.39 -0.01 1.13 16 29 H 0.06 0.74 8.11 -2.39 -0.02 0.72 16 30 H 0.04 0.70 8.14 -2.38 -0.02 0.68 16 31 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 32 H 0.07 0.78 7.72 -2.39 -0.02 0.76 16 33 H 0.07 0.78 7.82 -2.39 -0.02 0.76 16 34 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 35 H 0.05 0.77 4.98 -2.38 -0.01 0.76 16 36 H 0.06 0.66 8.14 -2.39 -0.02 0.65 16 37 H 0.07 1.20 6.33 -2.39 -0.02 1.18 16 38 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 39 H 0.09 1.58 6.69 -2.39 -0.02 1.56 16 40 H 0.08 1.87 7.10 -2.39 -0.02 1.86 16 41 H 0.14 4.74 8.14 -2.39 -0.02 4.72 16 42 H 0.14 4.73 8.14 -2.39 -0.02 4.71 16 43 H 0.00 0.24 8.14 -2.39 -0.02 0.22 16 44 H 0.00 0.26 8.14 -2.39 -0.02 0.24 16 45 H 0.27 15.37 8.31 -92.70 -0.77 14.60 16 46 H 0.08 1.56 6.69 -2.39 -0.02 1.54 16 47 H 0.08 1.87 7.10 -2.39 -0.02 1.86 16 48 H 0.09 1.18 7.84 -2.39 -0.02 1.16 16 49 H 0.07 1.32 5.37 -2.39 -0.01 1.30 16 Total: -1.00 -73.48 375.43 1.43 -72.05 By element: Atomic # 1 Polarization: 15.66 SS G_CDS: 0.91 Total: 16.57 kcal Atomic # 6 Polarization: -60.92 SS G_CDS: 4.44 Total: -56.48 kcal Atomic # 7 Polarization: -83.23 SS G_CDS: -1.37 Total: -84.60 kcal Atomic # 8 Polarization: -85.42 SS G_CDS: -4.27 Total: -89.69 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 2.03 Total: 45.49 kcal Atomic # 16 Polarization: 96.96 SS G_CDS: -0.31 Total: 96.66 kcal Total: -73.48 1.43 -72.05 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000341636858.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.163 kcal (2) G-P(sol) polarization free energy of solvation -73.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.049 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds