Wall clock time and date at job start Tue Mar 31 2020 13:14:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52997 * 109.47645 * 2 1 4 4 C 1.52994 * 109.47645 * 179.97438 * 3 2 1 5 5 C 1.50703 * 109.47531 * 179.97438 * 4 3 2 6 6 C 1.38402 * 119.82419 * 89.99853 * 5 4 3 7 7 C 1.37884 * 120.17081 * 180.02562 * 6 5 4 8 8 C 1.39850 * 119.82381 * 359.97438 * 7 6 5 9 9 C 1.47166 * 120.16746 * 179.97438 * 8 7 6 10 10 O 1.21254 * 120.00434 * 359.97438 * 9 8 7 11 11 C 1.50706 * 119.99927 * 180.02562 * 9 8 7 12 12 C 1.52997 * 109.47238 * 180.02562 * 11 9 8 13 13 C 1.50696 * 109.47055 * 179.97438 * 12 11 9 14 14 O 1.21279 * 120.00218 * 0.02562 * 13 12 11 15 15 N 1.34779 * 120.00208 * 179.97438 * 13 12 11 16 16 C 1.46496 * 120.00107 * 180.02562 * 15 13 12 17 17 C 1.50703 * 109.46953 * 179.97438 * 16 15 13 18 18 H 1.07998 * 120.00275 * 359.97438 * 17 16 15 19 19 C 1.37874 * 119.99789 * 179.97438 * 17 16 15 20 20 N 1.31524 * 120.00022 * 180.02562 * 19 17 16 21 21 Si 1.86799 * 120.00517 * 0.02562 * 19 17 16 22 22 H 1.48505 * 109.47146 * 89.99627 * 21 19 17 23 23 H 1.48490 * 109.47434 * 209.99867 * 21 19 17 24 24 H 1.48501 * 109.46731 * 330.00114 * 21 19 17 25 25 C 1.39851 * 119.65869 * 0.25300 * 8 7 6 26 26 C 1.37882 * 119.82183 * 359.51662 * 25 8 7 27 27 H 1.09005 * 109.47477 * 300.00409 * 1 2 3 28 28 H 1.09009 * 109.46888 * 60.00073 * 1 2 3 29 29 H 1.08995 * 109.47687 * 180.02562 * 1 2 3 30 30 H 1.09008 * 109.47009 * 239.99446 * 2 1 3 31 31 H 1.09000 * 109.47146 * 119.99948 * 2 1 3 32 32 H 1.09005 * 109.47017 * 59.99310 * 3 2 1 33 33 H 1.09009 * 109.46918 * 299.99909 * 3 2 1 34 34 H 1.09008 * 109.47009 * 59.99446 * 4 3 2 35 35 H 1.09000 * 109.47146 * 299.99948 * 4 3 2 36 36 H 1.08008 * 119.91553 * 359.97438 * 6 5 4 37 37 H 1.08007 * 120.08622 * 179.97438 * 7 6 5 38 38 H 1.09001 * 109.46953 * 299.99616 * 11 9 8 39 39 H 1.09000 * 109.47318 * 59.99214 * 11 9 8 40 40 H 1.09001 * 109.46832 * 299.99686 * 12 11 9 41 41 H 1.09004 * 109.47261 * 59.99705 * 12 11 9 42 42 H 0.97006 * 119.99798 * 359.97438 * 15 13 12 43 43 H 1.09001 * 109.47062 * 299.99546 * 16 15 13 44 44 H 1.08996 * 109.47565 * 60.00082 * 16 15 13 45 45 H 0.96997 * 120.00413 * 180.02562 * 20 19 17 46 46 H 1.08002 * 120.08622 * 179.72514 * 25 8 7 47 47 H 1.08001 * 119.91359 * 180.21051 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5700 1.4424 0.0006 5 6 4.0724 2.8632 0.0000 6 6 4.3014 3.5129 1.2004 7 6 4.7606 4.8130 1.2082 8 6 4.9955 5.4749 -0.0012 9 6 5.4850 6.8627 -0.0017 10 8 5.6854 7.4355 1.0481 11 6 5.7363 7.5726 -1.3071 12 6 6.2372 8.9911 -1.0282 13 6 6.4891 9.7007 -2.3336 14 8 6.2873 9.1284 -3.3836 15 7 6.9375 10.9717 -2.3342 16 6 7.1818 11.6616 -3.6032 17 6 7.6741 13.0592 -3.3284 18 1 7.7927 13.3996 -2.3103 19 6 7.9731 13.9033 -4.3767 20 7 8.4032 15.1229 -4.1370 21 14 7.7673 13.3150 -6.1377 22 1 6.3925 13.6249 -6.6057 23 1 8.7536 14.0038 -7.0082 24 1 7.9922 11.8484 -6.1989 25 6 4.7571 4.8131 -1.2099 26 6 4.3025 3.5115 -1.2010 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8901 29 1 -0.3634 -1.0276 0.0005 30 1 1.8933 -0.5140 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.6766 1.9563 0.8900 33 1 1.6767 1.9563 -0.8901 34 1 3.9337 0.9283 -0.8891 35 1 3.9330 0.9287 0.8909 36 1 4.1191 3.0005 2.1336 37 1 4.9384 5.3188 2.1458 38 1 6.4883 7.0279 -1.8780 39 1 4.8097 7.6199 -1.8793 40 1 5.4855 9.5361 -0.4571 41 1 7.1640 8.9433 -0.4563 42 1 7.0978 11.4298 -1.4943 43 1 7.9338 11.1168 -4.1740 44 1 6.2553 11.7091 -4.1752 45 1 8.6132 15.7169 -4.8745 46 1 4.9319 5.3192 -2.1479 47 1 4.1212 2.9979 -2.1336 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344207572.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:14:12 Heat of formation + Delta-G solvation = -87.721611 kcal Electronic energy + Delta-G solvation = -24432.866618 eV Core-core repulsion = 20772.143003 eV Total energy + Delta-G solvation = -3660.723615 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.41589 -39.17072 -38.53439 -36.15230 -34.36254 -33.16319 -32.59929 -32.28571 -31.26591 -29.42313 -28.16047 -26.02456 -24.49990 -22.89242 -22.34831 -21.68823 -21.37515 -19.94738 -19.55779 -17.72161 -16.85513 -16.35245 -15.95474 -15.88350 -15.64141 -15.39952 -15.13661 -14.63244 -14.54004 -14.44102 -14.15110 -13.87686 -13.83277 -13.30727 -13.26509 -13.07415 -12.81822 -12.75509 -12.29650 -12.11484 -11.99971 -11.90041 -11.77890 -11.62887 -11.31581 -11.18856 -11.10626 -11.01660 -11.00270 -10.76473 -9.97866 -9.83665 -9.49396 -9.31679 -9.23408 -9.05556 -8.77857 -8.15409 -6.21155 -4.23505 0.38366 1.06288 2.19715 3.21918 3.27006 3.33004 3.41094 3.47433 3.64564 4.16127 4.25063 4.33524 4.34442 4.52532 4.55177 4.65201 4.73437 4.75964 4.82984 5.03665 5.09408 5.12667 5.15010 5.16936 5.19492 5.26546 5.32948 5.39415 5.47053 5.51503 5.59536 5.67237 5.67871 5.74133 5.76443 5.86674 5.89085 5.96073 6.02001 6.11163 6.20404 6.56279 6.80116 7.06827 7.22192 7.37143 7.39709 8.13030 8.51997 8.75253 8.92346 9.38808 10.90838 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.026942 B = 0.001764 C = 0.001688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1039.025838 B =15864.790702 C =16583.493600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.125 4.125 3 C -0.115 4.115 4 C -0.086 4.086 5 C -0.053 4.053 6 C -0.133 4.133 7 C -0.059 4.059 8 C -0.172 4.172 9 C 0.397 3.603 10 O -0.454 6.454 11 C -0.148 4.148 12 C -0.133 4.133 13 C 0.500 3.500 14 O -0.564 6.564 15 N -0.705 5.705 16 C 0.219 3.781 17 C -0.544 4.544 18 H 0.080 0.920 19 C 0.077 3.923 20 N -0.892 5.892 21 Si 0.878 3.122 22 H -0.273 1.273 23 H -0.283 1.283 24 H -0.261 1.261 25 C -0.067 4.067 26 C -0.132 4.132 27 H 0.054 0.946 28 H 0.054 0.946 29 H 0.053 0.947 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.064 0.936 33 H 0.065 0.935 34 H 0.075 0.925 35 H 0.074 0.926 36 H 0.126 0.874 37 H 0.133 0.867 38 H 0.107 0.893 39 H 0.107 0.893 40 H 0.095 0.905 41 H 0.095 0.905 42 H 0.398 0.602 43 H 0.025 0.975 44 H 0.020 0.980 45 H 0.267 0.733 46 H 0.137 0.863 47 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.208 -30.514 10.484 34.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.163 4.163 3 C -0.153 4.153 4 C -0.123 4.123 5 C -0.053 4.053 6 C -0.151 4.151 7 C -0.077 4.077 8 C -0.173 4.173 9 C 0.275 3.725 10 O -0.329 6.329 11 C -0.186 4.186 12 C -0.173 4.173 13 C 0.285 3.715 14 O -0.444 6.444 15 N -0.353 5.353 16 C 0.097 3.903 17 C -0.582 4.582 18 H 0.098 0.902 19 C -0.126 4.126 20 N -0.530 5.530 21 Si 0.704 3.296 22 H -0.199 1.199 23 H -0.209 1.209 24 H -0.185 1.185 25 C -0.085 4.085 26 C -0.150 4.150 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.072 0.928 30 H 0.081 0.919 31 H 0.080 0.920 32 H 0.083 0.917 33 H 0.084 0.916 34 H 0.094 0.906 35 H 0.093 0.907 36 H 0.144 0.856 37 H 0.151 0.849 38 H 0.125 0.875 39 H 0.125 0.875 40 H 0.114 0.886 41 H 0.114 0.886 42 H 0.232 0.768 43 H 0.043 0.957 44 H 0.038 0.962 45 H 0.077 0.923 46 H 0.155 0.845 47 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -12.167 -30.399 10.183 34.290 hybrid contribution 0.029 0.137 -0.602 0.618 sum -12.138 -30.262 9.582 33.984 Atomic orbital electron populations 1.21779 0.95765 1.01644 1.01964 1.21545 0.96012 0.96619 1.02077 1.21614 0.93937 0.97004 1.02711 1.20717 0.95954 0.92360 1.03275 1.20176 0.95842 0.96081 0.93210 1.21009 1.01439 0.94880 0.97795 1.21424 0.94371 0.94051 0.97883 1.20547 1.05987 0.96450 0.94345 1.22603 0.72773 0.86272 0.90860 1.90517 1.40170 1.67191 1.35065 1.21752 1.04785 0.95850 0.96189 1.21449 1.04022 0.95254 0.96552 1.20505 0.77700 0.82533 0.90725 1.90634 1.53480 1.66573 1.33709 1.46202 1.64773 1.12764 1.11537 1.19496 0.96135 0.92587 0.82063 1.21113 1.46099 0.95253 0.95764 0.90219 1.24804 0.93968 0.94542 0.99325 1.69886 1.44121 1.06451 1.32501 0.86806 0.78503 0.79919 0.84381 1.19871 1.20896 1.18534 1.21571 0.94833 0.94364 0.97698 1.21040 1.01165 0.94947 0.97815 0.92717 0.92658 0.92754 0.91936 0.91994 0.91705 0.91609 0.90649 0.90737 0.85593 0.84919 0.87493 0.87492 0.88632 0.88636 0.76835 0.95700 0.96163 0.92267 0.84519 0.85412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.69 9.91 37.15 0.37 -0.32 16 2 C -0.12 -0.55 5.93 -26.74 -0.16 -0.71 16 3 C -0.12 -0.58 5.20 -26.74 -0.14 -0.72 16 4 C -0.09 -0.45 5.34 -27.89 -0.15 -0.60 16 5 C -0.05 -0.39 5.14 -104.50 -0.54 -0.92 16 6 C -0.13 -1.05 9.68 -39.65 -0.38 -1.43 16 7 C -0.06 -0.57 9.60 -39.11 -0.38 -0.94 16 8 C -0.17 -1.79 5.87 -105.07 -0.62 -2.41 16 9 C 0.40 4.74 7.12 -30.68 -0.22 4.52 16 10 O -0.45 -6.52 15.98 5.58 0.09 -6.43 16 11 C -0.15 -1.78 3.60 -27.88 -0.10 -1.88 16 12 C -0.13 -1.84 4.99 -27.89 -0.14 -1.98 16 13 C 0.50 9.31 7.83 -10.99 -0.09 9.23 16 14 O -0.56 -12.23 15.98 5.56 0.09 -12.14 16 15 N -0.70 -14.35 5.55 -61.48 -0.34 -14.69 16 16 C 0.22 5.42 4.50 -5.19 -0.02 5.40 16 17 C -0.54 -15.06 9.83 -34.44 -0.34 -15.40 16 18 H 0.08 2.30 7.84 -52.49 -0.41 1.88 16 19 C 0.08 2.20 5.47 -17.82 -0.10 2.10 16 20 N -0.89 -26.63 13.96 55.43 0.77 -25.86 16 21 Si 0.88 21.48 27.47 -169.99 -4.67 16.81 16 22 H -0.27 -6.59 7.11 56.52 0.40 -6.18 16 23 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 24 H -0.26 -6.34 6.54 56.52 0.37 -5.97 16 25 C -0.07 -0.59 9.47 -39.11 -0.37 -0.96 16 26 C -0.13 -1.01 9.68 -39.65 -0.38 -1.40 16 27 H 0.05 0.25 8.14 -51.93 -0.42 -0.18 16 28 H 0.05 0.25 8.14 -51.92 -0.42 -0.17 16 29 H 0.05 0.22 8.14 -51.93 -0.42 -0.21 16 30 H 0.06 0.26 8.14 -51.92 -0.42 -0.16 16 31 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 32 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 33 H 0.07 0.37 8.14 -51.92 -0.42 -0.06 16 34 H 0.07 0.35 8.08 -51.92 -0.42 -0.07 16 35 H 0.07 0.34 8.08 -51.93 -0.42 -0.08 16 36 H 0.13 0.74 8.06 -52.48 -0.42 0.32 16 37 H 0.13 1.26 7.65 -52.48 -0.40 0.85 16 38 H 0.11 1.23 8.05 -51.93 -0.42 0.82 16 39 H 0.11 1.23 8.04 -51.93 -0.42 0.82 16 40 H 0.10 1.24 8.10 -51.93 -0.42 0.82 16 41 H 0.10 1.24 8.10 -51.93 -0.42 0.82 16 42 H 0.40 7.22 8.32 -40.82 -0.34 6.88 16 43 H 0.03 0.65 7.20 -51.93 -0.37 0.27 16 44 H 0.02 0.52 7.57 -51.93 -0.39 0.13 16 45 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 46 H 0.14 1.06 7.05 -52.49 -0.37 0.69 16 47 H 0.13 0.75 8.06 -52.49 -0.42 0.33 16 LS Contribution 394.34 15.07 5.94 5.94 Total: -1.00 -33.09 394.34 -9.64 -42.73 By element: Atomic # 1 Polarization: 9.83 SS G_CDS: -7.78 Total: 2.05 kcal Atomic # 6 Polarization: -4.67 SS G_CDS: -3.75 Total: -8.42 kcal Atomic # 7 Polarization: -40.98 SS G_CDS: 0.43 Total: -40.55 kcal Atomic # 8 Polarization: -18.75 SS G_CDS: 0.18 Total: -18.57 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -4.67 Total: 16.81 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -33.09 -9.64 -42.73 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344207572.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.988 kcal (2) G-P(sol) polarization free energy of solvation -33.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.733 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds