Wall clock time and date at job start Tue Mar 31 2020 12:26:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47321 * 2 1 4 4 C 1.52998 * 109.47525 * 185.83878 * 3 2 1 5 5 C 1.50703 * 115.55072 * 291.58116 * 4 3 2 6 6 O 1.21286 * 120.00197 * 110.98770 * 5 4 3 7 7 N 1.34776 * 119.99819 * 290.97694 * 5 4 3 8 8 C 1.39920 * 120.00094 * 185.02609 * 7 5 4 9 9 C 1.38932 * 120.04214 * 328.41377 * 8 7 5 10 10 C 1.38117 * 120.03824 * 180.02562 * 9 8 7 11 11 C 1.38212 * 120.12809 * 359.76716 * 10 9 8 12 12 C 1.38770 * 120.07930 * 0.50484 * 11 10 9 13 13 O 1.35899 * 120.01798 * 179.74317 * 12 11 10 14 14 C 1.42899 * 117.00220 * 359.73527 * 13 12 11 15 15 C 1.53000 * 109.47465 * 179.97438 * 14 13 12 16 16 C 1.50705 * 109.47183 * 179.97438 * 15 14 13 17 17 H 1.07999 * 119.99730 * 359.97438 * 16 15 14 18 18 C 1.37877 * 119.99733 * 179.97438 * 16 15 14 19 19 N 1.31516 * 119.99710 * 179.97438 * 18 16 15 20 20 Si 1.86798 * 120.00128 * 0.02562 * 18 16 15 21 21 H 1.48507 * 109.47340 * 89.99708 * 20 18 16 22 22 H 1.48497 * 109.47040 * 209.99704 * 20 18 16 23 23 H 1.48500 * 109.47200 * 329.99759 * 20 18 16 24 24 C 1.38619 * 119.96076 * 359.47895 * 12 11 10 25 25 C 1.52999 * 117.49770 * 77.24545 * 4 3 2 26 26 C 1.53003 * 117.50103 * 145.90543 * 4 3 2 27 27 H 1.08996 * 109.47195 * 180.02562 * 1 2 3 28 28 H 1.09006 * 109.46907 * 299.99750 * 1 2 3 29 29 H 1.08999 * 109.47114 * 59.99444 * 1 2 3 30 30 H 1.09006 * 109.46907 * 240.00250 * 2 1 3 31 31 H 1.09000 * 109.47635 * 120.00510 * 2 1 3 32 32 H 1.09003 * 109.46595 * 65.84232 * 3 2 1 33 33 H 1.08998 * 109.47472 * 305.84197 * 3 2 1 34 34 H 0.97003 * 119.99822 * 5.02993 * 7 5 4 35 35 H 1.08001 * 119.98044 * 0.02562 * 9 8 7 36 36 H 1.08001 * 119.93422 * 180.02562 * 10 9 8 37 37 H 1.08001 * 119.96040 * 180.25706 * 11 10 9 38 38 H 1.08998 * 109.47446 * 59.99386 * 14 13 12 39 39 H 1.09010 * 109.47005 * 299.99651 * 14 13 12 40 40 H 1.09004 * 109.47062 * 299.99531 * 15 14 13 41 41 H 1.08998 * 109.47228 * 59.99329 * 15 14 13 42 42 H 0.96997 * 119.99585 * 180.02562 * 19 18 16 43 43 H 1.08005 * 120.06070 * 180.25487 * 24 12 11 44 44 H 1.08996 * 117.50279 * 215.00814 * 25 4 3 45 45 H 1.09005 * 117.49793 * 0.02562 * 25 4 3 46 46 H 1.08999 * 117.49532 * 359.97438 * 26 4 3 47 47 H 1.09001 * 117.50112 * 144.97700 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5629 1.4450 -0.1467 5 6 4.3304 0.9034 1.0317 6 8 4.9267 -0.1484 0.9356 7 7 4.3543 1.5879 2.1925 8 6 5.1508 1.1405 3.2523 9 6 5.3823 -0.2188 3.4227 10 6 6.1680 -0.6604 4.4692 11 6 6.7299 0.2481 5.3463 12 6 6.4974 1.6065 5.1842 13 8 7.0462 2.4983 6.0504 14 6 7.8468 1.9670 7.1081 15 6 8.3751 3.1130 7.9732 16 6 9.2189 2.5525 9.0890 17 1 9.3635 1.4856 9.1730 18 6 9.8062 3.4019 10.0026 19 7 10.5421 2.9127 10.9766 20 14 9.5554 5.2473 9.8577 21 1 8.3534 5.6460 10.6333 22 1 10.7470 5.9524 10.3943 23 1 9.3664 5.6106 8.4303 24 6 5.7097 2.0537 4.1349 25 6 4.1387 1.1916 -1.5414 26 6 4.1950 2.5952 -0.9332 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8901 29 1 -0.3633 0.5139 -0.8899 30 1 1.8933 -0.5138 -0.8901 31 1 1.8934 -0.5139 0.8899 32 1 1.7646 1.9251 0.9377 33 1 1.5938 1.9857 -0.8330 34 1 3.8193 2.3908 2.2931 35 1 4.9475 -0.9305 2.7366 36 1 6.3472 -1.7174 4.5999 37 1 7.3473 -0.1000 6.1613 38 1 8.6861 1.4141 6.6861 39 1 7.2422 1.2979 7.7206 40 1 8.9799 3.7817 7.3606 41 1 7.5361 3.6663 8.3952 42 1 10.9550 3.5103 11.6195 43 1 5.5311 3.1109 4.0048 44 1 5.0724 0.6332 -1.6067 45 1 3.4324 1.0235 -2.3546 46 1 3.5258 3.3498 -1.3464 47 1 5.1657 2.9605 -0.5980 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000348825465.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:26:22 Heat of formation + Delta-G solvation = -40.708810 kcal Electronic energy + Delta-G solvation = -25447.021646 eV Core-core repulsion = 21788.336660 eV Total energy + Delta-G solvation = -3658.684987 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -41.03758 -39.64725 -38.00151 -36.81873 -34.69872 -34.23035 -33.33948 -31.14548 -30.02123 -29.11153 -27.91960 -25.39684 -24.34656 -23.05985 -22.66869 -22.10475 -21.61805 -20.40855 -19.73356 -18.32631 -17.38716 -16.76869 -16.27317 -15.97215 -15.64198 -15.50239 -15.45016 -15.23238 -14.77981 -14.31278 -14.11162 -13.83560 -13.57948 -13.35655 -13.14459 -12.91621 -12.68391 -12.53404 -12.27854 -12.01222 -11.94054 -11.85201 -11.73206 -11.49973 -11.17959 -10.93928 -10.83688 -10.82929 -10.46514 -10.36161 -10.19938 -10.01738 -9.85189 -9.79214 -9.35779 -8.63761 -8.37960 -7.83691 -6.14620 -4.15596 1.26727 1.63285 2.30522 2.64417 3.19593 3.27197 3.34565 3.39724 3.77335 3.90866 4.05201 4.24436 4.34087 4.37740 4.42800 4.69080 4.75954 4.91928 4.97224 5.16576 5.19358 5.21710 5.29365 5.31334 5.34325 5.37452 5.40655 5.46187 5.48360 5.62588 5.66356 5.69669 5.73104 5.78019 5.90688 5.91207 5.93135 6.24190 6.31925 6.40365 6.53738 6.65902 6.90229 7.09494 7.17367 7.21421 7.60925 7.84571 7.88633 8.37583 8.86199 9.45495 10.97873 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.024856 B = 0.002127 C = 0.002074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1126.236169 B =13163.955452 C =13499.707976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.125 4.125 3 C -0.076 4.076 4 C -0.161 4.161 5 C 0.552 3.448 6 O -0.512 6.512 7 N -0.664 5.664 8 C 0.175 3.825 9 C -0.173 4.173 10 C -0.062 4.062 11 C -0.222 4.222 12 C 0.162 3.838 13 O -0.319 6.319 14 C 0.072 3.928 15 C -0.009 4.009 16 C -0.527 4.527 17 H 0.075 0.925 18 C 0.072 3.928 19 N -0.897 5.897 20 Si 0.881 3.119 21 H -0.275 1.275 22 H -0.286 1.286 23 H -0.263 1.263 24 C -0.190 4.190 25 C -0.141 4.141 26 C -0.159 4.159 27 H 0.055 0.945 28 H 0.054 0.946 29 H 0.054 0.946 30 H 0.066 0.934 31 H 0.062 0.938 32 H 0.070 0.930 33 H 0.076 0.924 34 H 0.411 0.589 35 H 0.140 0.860 36 H 0.126 0.874 37 H 0.133 0.867 38 H 0.058 0.942 39 H 0.058 0.942 40 H 0.028 0.972 41 H 0.023 0.977 42 H 0.266 0.734 43 H 0.130 0.870 44 H 0.104 0.896 45 H 0.105 0.895 46 H 0.106 0.894 47 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.420 -2.708 -25.469 32.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.162 4.162 3 C -0.113 4.113 4 C -0.164 4.164 5 C 0.339 3.661 6 O -0.386 6.386 7 N -0.308 5.308 8 C 0.081 3.919 9 C -0.193 4.193 10 C -0.081 4.081 11 C -0.242 4.242 12 C 0.115 3.885 13 O -0.232 6.232 14 C -0.002 4.002 15 C -0.046 4.046 16 C -0.565 4.565 17 H 0.093 0.907 18 C -0.131 4.131 19 N -0.535 5.535 20 Si 0.708 3.292 21 H -0.201 1.201 22 H -0.212 1.212 23 H -0.188 1.188 24 C -0.211 4.211 25 C -0.178 4.178 26 C -0.196 4.196 27 H 0.074 0.926 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.085 0.915 31 H 0.081 0.919 32 H 0.089 0.911 33 H 0.095 0.905 34 H 0.247 0.753 35 H 0.158 0.842 36 H 0.144 0.856 37 H 0.151 0.849 38 H 0.076 0.924 39 H 0.076 0.924 40 H 0.046 0.954 41 H 0.042 0.958 42 H 0.076 0.924 43 H 0.148 0.852 44 H 0.122 0.878 45 H 0.123 0.877 46 H 0.124 0.876 47 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -18.895 -3.191 -25.417 31.831 hybrid contribution -0.153 1.177 0.336 1.234 sum -19.048 -2.014 -25.080 31.558 Atomic orbital electron populations 1.21771 0.95523 1.01892 1.01759 1.21508 0.95798 0.96133 1.02803 1.21142 0.89335 0.97928 1.02907 1.21471 0.96016 1.06505 0.92405 1.19640 0.79965 0.84016 0.82474 1.90696 1.43373 1.21671 1.82885 1.43395 1.45422 1.29864 1.12114 1.17341 0.93758 0.92631 0.88188 1.21170 1.03835 0.94060 1.00211 1.20839 0.94942 0.99344 0.92986 1.21427 1.06627 0.92444 1.03672 1.18743 0.91655 0.88624 0.89521 1.86104 1.63222 1.34806 1.39081 1.23102 0.92189 0.99223 0.85647 1.19589 0.96529 0.93985 0.94526 1.20840 1.30292 0.95701 1.09637 0.90713 1.24940 0.94363 0.99050 0.94714 1.69895 1.32749 1.35556 1.15314 0.86751 0.77896 0.85436 0.79136 1.20064 1.21175 1.18779 1.19946 1.03980 0.99452 0.97691 1.23013 1.03193 0.98409 0.93213 1.23177 1.02570 0.91789 1.02091 0.92567 0.92682 0.92719 0.91485 0.91932 0.91124 0.90543 0.75325 0.84231 0.85646 0.84916 0.92391 0.92395 0.95418 0.95846 0.92445 0.85184 0.87765 0.87705 0.87556 0.88161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.82 9.91 37.16 0.37 -0.45 16 2 C -0.12 -0.82 5.76 -26.73 -0.15 -0.98 16 3 C -0.08 -0.42 5.08 -26.73 -0.14 -0.56 16 4 C -0.16 -1.17 1.86 -155.66 -0.29 -1.46 16 5 C 0.55 5.95 6.57 -10.98 -0.07 5.88 16 6 O -0.51 -7.34 14.00 5.55 0.08 -7.26 16 7 N -0.66 -6.79 5.35 -9.88 -0.05 -6.85 16 8 C 0.17 2.34 6.36 -83.72 -0.53 1.81 16 9 C -0.17 -2.45 8.73 -39.37 -0.34 -2.79 16 10 C -0.06 -0.88 10.03 -39.64 -0.40 -1.27 16 11 C -0.22 -3.49 9.04 -39.39 -0.36 -3.85 16 12 C 0.16 2.74 6.68 -39.24 -0.26 2.47 16 13 O -0.32 -6.18 10.13 -19.42 -0.20 -6.38 16 14 C 0.07 1.49 4.68 37.16 0.17 1.66 16 15 C -0.01 -0.21 4.41 -27.88 -0.12 -0.34 16 16 C -0.53 -14.80 9.66 -34.44 -0.33 -15.14 16 17 H 0.07 2.22 7.99 -52.49 -0.42 1.80 16 18 C 0.07 2.06 5.47 -17.82 -0.10 1.96 16 19 N -0.90 -27.20 13.96 55.43 0.77 -26.43 16 20 Si 0.88 21.49 27.47 -169.99 -4.67 16.82 16 21 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 22 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 23 H -0.26 -6.23 6.54 56.52 0.37 -5.86 16 24 C -0.19 -2.75 9.90 -39.25 -0.39 -3.14 16 25 C -0.14 -0.95 9.75 -26.69 -0.26 -1.21 16 26 C -0.16 -0.94 9.91 -26.69 -0.26 -1.20 16 27 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 28 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 29 H 0.05 0.25 8.14 -51.93 -0.42 -0.18 16 30 H 0.07 0.46 8.12 -51.93 -0.42 0.03 16 31 H 0.06 0.52 7.98 -51.93 -0.41 0.11 16 32 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.08 0.32 8.07 -51.93 -0.42 -0.10 16 34 H 0.41 2.97 8.81 -40.82 -0.36 2.61 16 35 H 0.14 2.01 5.94 -52.49 -0.31 1.70 16 36 H 0.13 1.46 8.06 -52.49 -0.42 1.04 16 37 H 0.13 2.04 6.29 -52.49 -0.33 1.71 16 38 H 0.06 1.15 7.65 -51.93 -0.40 0.76 16 39 H 0.06 1.14 7.67 -51.92 -0.40 0.74 16 40 H 0.03 0.67 7.20 -51.93 -0.37 0.30 16 41 H 0.02 0.56 7.57 -51.93 -0.39 0.16 16 42 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 43 H 0.13 1.66 8.06 -52.48 -0.42 1.24 16 44 H 0.10 0.86 8.06 -51.93 -0.42 0.44 16 45 H 0.10 0.53 8.14 -51.93 -0.42 0.10 16 46 H 0.11 0.43 8.14 -51.93 -0.42 0.00 16 47 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 LS Contribution 388.22 15.07 5.85 5.85 Total: -1.00 -32.46 388.22 -9.31 -41.77 By element: Atomic # 1 Polarization: 8.70 SS G_CDS: -7.63 Total: 1.07 kcal Atomic # 6 Polarization: -15.13 SS G_CDS: -3.47 Total: -18.60 kcal Atomic # 7 Polarization: -34.00 SS G_CDS: 0.72 Total: -33.28 kcal Atomic # 8 Polarization: -13.52 SS G_CDS: -0.12 Total: -13.64 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -4.67 Total: 16.82 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -32.46 -9.31 -41.77 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348825465.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.063 kcal (2) G-P(sol) polarization free energy of solvation -32.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.772 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds