Wall clock time and date at job start Tue Mar 31 2020 12:26:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47321 * 2 1 4 4 C 1.52998 * 109.47525 * 185.83878 * 3 2 1 5 5 C 1.50703 * 115.55072 * 291.58116 * 4 3 2 6 6 O 1.21286 * 120.00197 * 110.98770 * 5 4 3 7 7 N 1.34776 * 119.99819 * 290.97694 * 5 4 3 8 8 C 1.39920 * 120.00094 * 185.02609 * 7 5 4 9 9 C 1.38932 * 120.04214 * 328.41377 * 8 7 5 10 10 C 1.38117 * 120.03824 * 180.02562 * 9 8 7 11 11 C 1.38212 * 120.12809 * 359.76716 * 10 9 8 12 12 C 1.38770 * 120.07930 * 0.50484 * 11 10 9 13 13 O 1.35899 * 120.01798 * 179.74317 * 12 11 10 14 14 C 1.42899 * 117.00220 * 359.73527 * 13 12 11 15 15 C 1.53000 * 109.47465 * 179.97438 * 14 13 12 16 16 C 1.50705 * 109.47183 * 179.97438 * 15 14 13 17 17 H 1.07999 * 119.99730 * 359.97438 * 16 15 14 18 18 C 1.37877 * 119.99733 * 179.97438 * 16 15 14 19 19 N 1.31516 * 119.99710 * 179.97438 * 18 16 15 20 20 Si 1.86798 * 120.00128 * 0.02562 * 18 16 15 21 21 H 1.48507 * 109.47340 * 89.99708 * 20 18 16 22 22 H 1.48497 * 109.47040 * 209.99704 * 20 18 16 23 23 H 1.48500 * 109.47200 * 329.99759 * 20 18 16 24 24 C 1.38619 * 119.96076 * 359.47895 * 12 11 10 25 25 C 1.52999 * 117.49770 * 77.24545 * 4 3 2 26 26 C 1.53003 * 117.50103 * 145.90543 * 4 3 2 27 27 H 1.08996 * 109.47195 * 180.02562 * 1 2 3 28 28 H 1.09006 * 109.46907 * 299.99750 * 1 2 3 29 29 H 1.08999 * 109.47114 * 59.99444 * 1 2 3 30 30 H 1.09006 * 109.46907 * 240.00250 * 2 1 3 31 31 H 1.09000 * 109.47635 * 120.00510 * 2 1 3 32 32 H 1.09003 * 109.46595 * 65.84232 * 3 2 1 33 33 H 1.08998 * 109.47472 * 305.84197 * 3 2 1 34 34 H 0.97003 * 119.99822 * 5.02993 * 7 5 4 35 35 H 1.08001 * 119.98044 * 0.02562 * 9 8 7 36 36 H 1.08001 * 119.93422 * 180.02562 * 10 9 8 37 37 H 1.08001 * 119.96040 * 180.25706 * 11 10 9 38 38 H 1.08998 * 109.47446 * 59.99386 * 14 13 12 39 39 H 1.09010 * 109.47005 * 299.99651 * 14 13 12 40 40 H 1.09004 * 109.47062 * 299.99531 * 15 14 13 41 41 H 1.08998 * 109.47228 * 59.99329 * 15 14 13 42 42 H 0.96997 * 119.99585 * 180.02562 * 19 18 16 43 43 H 1.08005 * 120.06070 * 180.25487 * 24 12 11 44 44 H 1.08996 * 117.50279 * 215.00814 * 25 4 3 45 45 H 1.09005 * 117.49793 * 0.02562 * 25 4 3 46 46 H 1.08999 * 117.49532 * 359.97438 * 26 4 3 47 47 H 1.09001 * 117.50112 * 144.97700 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5629 1.4450 -0.1467 5 6 4.3304 0.9034 1.0317 6 8 4.9267 -0.1484 0.9356 7 7 4.3543 1.5879 2.1925 8 6 5.1508 1.1405 3.2523 9 6 5.3823 -0.2188 3.4227 10 6 6.1680 -0.6604 4.4692 11 6 6.7299 0.2481 5.3463 12 6 6.4974 1.6065 5.1842 13 8 7.0462 2.4983 6.0504 14 6 7.8468 1.9670 7.1081 15 6 8.3751 3.1130 7.9732 16 6 9.2189 2.5525 9.0890 17 1 9.3635 1.4856 9.1730 18 6 9.8062 3.4019 10.0026 19 7 10.5421 2.9127 10.9766 20 14 9.5554 5.2473 9.8577 21 1 8.3534 5.6460 10.6333 22 1 10.7470 5.9524 10.3943 23 1 9.3664 5.6106 8.4303 24 6 5.7097 2.0537 4.1349 25 6 4.1387 1.1916 -1.5414 26 6 4.1950 2.5952 -0.9332 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8901 29 1 -0.3633 0.5139 -0.8899 30 1 1.8933 -0.5138 -0.8901 31 1 1.8934 -0.5139 0.8899 32 1 1.7646 1.9251 0.9377 33 1 1.5938 1.9857 -0.8330 34 1 3.8193 2.3908 2.2931 35 1 4.9475 -0.9305 2.7366 36 1 6.3472 -1.7174 4.5999 37 1 7.3473 -0.1000 6.1613 38 1 8.6861 1.4141 6.6861 39 1 7.2422 1.2979 7.7206 40 1 8.9799 3.7817 7.3606 41 1 7.5361 3.6663 8.3952 42 1 10.9550 3.5103 11.6195 43 1 5.5311 3.1109 4.0048 44 1 5.0724 0.6332 -1.6067 45 1 3.4324 1.0235 -2.3546 46 1 3.5258 3.3498 -1.3464 47 1 5.1657 2.9605 -0.5980 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000348825465.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:26:20 Heat of formation + Delta-G solvation = -58.919380 kcal Electronic energy + Delta-G solvation = -25447.811316 eV Core-core repulsion = 21788.336660 eV Total energy + Delta-G solvation = -3659.474656 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.94846 -40.83709 -38.95943 -37.80356 -35.78312 -35.33595 -34.70112 -32.94912 -31.31287 -30.30659 -28.41253 -27.16953 -25.30659 -23.83607 -23.54023 -23.28673 -22.38449 -21.92466 -20.57508 -19.66652 -18.74596 -18.07522 -17.33916 -17.03849 -16.89842 -16.74180 -16.54131 -16.15883 -16.06380 -15.44905 -15.11737 -14.80291 -14.62516 -14.48506 -14.31025 -14.27748 -13.91409 -13.42673 -13.34699 -13.12940 -12.99631 -12.69342 -12.59629 -12.45724 -12.34207 -12.19182 -12.11154 -11.78419 -11.70501 -11.65602 -11.46059 -11.35495 -11.26301 -10.99107 -10.81672 -10.72621 -9.50961 -9.05414 -8.34856 -6.41812 0.15609 0.42900 1.36332 1.37935 1.43069 1.50547 1.75943 2.33311 2.39668 2.65464 2.76709 3.00100 3.48266 3.62072 3.82582 3.84113 3.93157 4.11647 4.16030 4.20648 4.22376 4.24706 4.29478 4.37683 4.48456 4.50091 4.62235 4.70204 4.72985 4.83333 4.84819 4.94239 4.97939 4.99912 5.08780 5.19338 5.19813 5.22274 5.27196 5.30266 5.31413 5.34302 5.45246 5.47819 5.52196 5.84392 6.15963 6.33083 6.45739 6.64083 7.00912 7.23269 8.80825 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.024856 B = 0.002127 C = 0.002074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1126.236169 B =13163.955452 C =13499.707976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.125 4.125 3 C -0.070 4.070 4 C -0.165 4.165 5 C 0.549 3.451 6 O -0.552 6.552 7 N -0.654 5.654 8 C 0.179 3.821 9 C -0.178 4.178 10 C -0.061 4.061 11 C -0.234 4.234 12 C 0.135 3.865 13 O -0.329 6.329 14 C 0.086 3.914 15 C -0.006 4.006 16 C -0.537 4.537 17 H 0.041 0.959 18 C 0.012 3.988 19 N -0.943 5.943 20 Si 0.950 3.050 21 H -0.264 1.264 22 H -0.280 1.280 23 H -0.249 1.249 24 C -0.186 4.186 25 C -0.148 4.148 26 C -0.141 4.141 27 H 0.051 0.949 28 H 0.056 0.944 29 H 0.068 0.932 30 H 0.061 0.939 31 H 0.037 0.963 32 H 0.078 0.922 33 H 0.101 0.899 34 H 0.427 0.573 35 H 0.138 0.862 36 H 0.147 0.853 37 H 0.130 0.870 38 H 0.057 0.943 39 H 0.060 0.940 40 H 0.028 0.972 41 H 0.029 0.971 42 H 0.270 0.730 43 H 0.149 0.851 44 H 0.082 0.918 45 H 0.125 0.875 46 H 0.135 0.865 47 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.564 -0.619 -27.699 35.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.163 4.163 3 C -0.108 4.108 4 C -0.168 4.168 5 C 0.338 3.662 6 O -0.429 6.429 7 N -0.299 5.299 8 C 0.084 3.916 9 C -0.198 4.198 10 C -0.080 4.080 11 C -0.253 4.253 12 C 0.089 3.911 13 O -0.243 6.243 14 C 0.011 3.989 15 C -0.043 4.043 16 C -0.575 4.575 17 H 0.059 0.941 18 C -0.187 4.187 19 N -0.582 5.582 20 Si 0.773 3.227 21 H -0.189 1.189 22 H -0.206 1.206 23 H -0.173 1.173 24 C -0.207 4.207 25 C -0.185 4.185 26 C -0.178 4.178 27 H 0.070 0.930 28 H 0.075 0.925 29 H 0.087 0.913 30 H 0.080 0.920 31 H 0.056 0.944 32 H 0.097 0.903 33 H 0.119 0.881 34 H 0.266 0.734 35 H 0.155 0.845 36 H 0.165 0.835 37 H 0.148 0.852 38 H 0.076 0.924 39 H 0.078 0.922 40 H 0.047 0.953 41 H 0.047 0.953 42 H 0.079 0.921 43 H 0.166 0.834 44 H 0.101 0.899 45 H 0.144 0.856 46 H 0.153 0.847 47 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -21.075 -1.089 -27.672 34.800 hybrid contribution 0.485 0.375 0.937 1.120 sum -20.590 -0.713 -26.735 33.752 Atomic orbital electron populations 1.21750 0.94488 1.01925 1.02507 1.21495 0.96687 0.96763 1.01354 1.21177 0.87813 0.97356 1.04406 1.21458 0.96660 1.07793 0.90935 1.20346 0.79342 0.83364 0.83155 1.90676 1.45172 1.23532 1.83560 1.43386 1.44874 1.30345 1.11249 1.17398 0.93450 0.92236 0.88489 1.21316 1.03785 0.94650 1.00067 1.21064 0.94258 1.00296 0.92352 1.21487 1.07169 0.92475 1.04176 1.19016 0.93090 0.88831 0.90209 1.86020 1.63610 1.35427 1.39251 1.22711 0.92564 0.97659 0.85965 1.19447 0.96063 0.94996 0.93840 1.21117 1.30884 0.94451 1.11064 0.94055 1.25910 0.93965 1.04551 0.94225 1.70032 1.34103 1.37618 1.16464 0.85656 0.78288 0.78789 0.79961 1.18855 1.20571 1.17289 1.20093 1.03158 1.00564 0.96875 1.23082 1.02787 0.99120 0.93498 1.23285 1.02493 0.91672 1.00394 0.92991 0.92490 0.91343 0.91976 0.94425 0.90316 0.88084 0.73388 0.84462 0.83516 0.85230 0.92434 0.92162 0.95337 0.95276 0.92120 0.83360 0.89937 0.85638 0.84714 0.89000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.32 9.91 71.98 0.71 -0.61 16 2 C -0.13 -1.47 5.76 30.59 0.18 -1.30 16 3 C -0.07 -0.59 5.08 30.59 0.16 -0.43 16 4 C -0.17 -2.07 1.86 -52.93 -0.10 -2.17 16 5 C 0.55 11.27 6.57 87.66 0.58 11.85 16 6 O -0.55 -15.86 14.00 -3.05 -0.04 -15.90 16 7 N -0.65 -12.33 5.35 -303.55 -1.62 -13.95 16 8 C 0.18 4.60 6.36 38.14 0.24 4.84 16 9 C -0.18 -4.96 8.73 22.41 0.20 -4.77 16 10 C -0.06 -1.69 10.03 22.23 0.22 -1.47 16 11 C -0.23 -7.32 9.04 22.39 0.20 -7.12 16 12 C 0.13 4.48 6.68 22.49 0.15 4.63 16 13 O -0.33 -12.56 10.13 -92.41 -0.94 -13.50 16 14 C 0.09 3.52 4.68 71.98 0.34 3.86 16 15 C -0.01 -0.29 4.41 29.85 0.13 -0.15 16 16 C -0.54 -30.77 9.66 25.60 0.25 -30.52 16 17 H 0.04 2.56 7.99 -2.91 -0.02 2.54 16 18 C 0.01 0.67 5.47 84.65 0.46 1.13 16 19 N -0.94 -58.28 13.96 21.45 0.30 -57.98 16 20 Si 0.95 43.89 27.47 68.60 1.88 45.77 16 21 H -0.26 -11.65 7.11 99.48 0.71 -10.94 16 22 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 23 H -0.25 -10.87 6.54 99.48 0.65 -10.22 16 24 C -0.19 -5.14 9.90 22.48 0.22 -4.92 16 25 C -0.15 -1.72 9.75 30.62 0.30 -1.42 16 26 C -0.14 -1.24 9.91 30.62 0.30 -0.94 16 27 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 28 H 0.06 0.48 8.14 -2.38 -0.02 0.47 16 29 H 0.07 0.43 8.14 -2.39 -0.02 0.41 16 30 H 0.06 0.78 8.12 -2.38 -0.02 0.76 16 31 H 0.04 0.62 7.98 -2.39 -0.02 0.60 16 32 H 0.08 0.55 8.14 -2.39 -0.02 0.53 16 33 H 0.10 0.41 8.07 -2.39 -0.02 0.40 16 34 H 0.43 5.13 8.81 -92.71 -0.82 4.31 16 35 H 0.14 3.95 5.94 -2.91 -0.02 3.94 16 36 H 0.15 3.31 8.06 -2.91 -0.02 3.28 16 37 H 0.13 4.06 6.29 -2.91 -0.02 4.04 16 38 H 0.06 2.34 7.65 -2.39 -0.02 2.32 16 39 H 0.06 2.41 7.67 -2.38 -0.02 2.40 16 40 H 0.03 1.35 7.20 -2.39 -0.02 1.33 16 41 H 0.03 1.35 7.57 -2.39 -0.02 1.34 16 42 H 0.27 15.49 8.31 -92.71 -0.77 14.72 16 43 H 0.15 3.47 8.06 -2.91 -0.02 3.44 16 44 H 0.08 1.34 8.06 -2.39 -0.02 1.32 16 45 H 0.13 0.92 8.14 -2.38 -0.02 0.90 16 46 H 0.13 0.46 8.14 -2.39 -0.02 0.44 16 47 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 Total: -1.00 -71.39 388.22 4.21 -67.18 By element: Atomic # 1 Polarization: 17.80 SS G_CDS: 0.09 Total: 17.89 kcal Atomic # 6 Polarization: -34.05 SS G_CDS: 4.54 Total: -29.51 kcal Atomic # 7 Polarization: -70.61 SS G_CDS: -1.32 Total: -71.93 kcal Atomic # 8 Polarization: -28.42 SS G_CDS: -0.98 Total: -29.40 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 1.88 Total: 45.77 kcal Total: -71.39 4.21 -67.18 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348825465.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.260 kcal (2) G-P(sol) polarization free energy of solvation -71.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.179 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds