Wall clock time and date at job start Tue Mar 31 2020 12:31:48
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42900 * 1
3 3 C 1.42897 * 113.99897 * 2 1
4 4 C 1.50698 * 109.47059 * 179.97438 * 3 2 1
5 5 C 1.38001 * 120.07348 * 359.72290 * 4 3 2
6 6 C 1.38317 * 120.14273 * 180.25447 * 5 4 3
7 7 C 1.38373 * 120.28754 * 0.04346 * 6 5 4
8 8 C 1.37952 * 120.14212 * 359.95676 * 7 6 5
9 9 C 1.39515 * 120.07259 * 180.02562 * 4 3 2
10 10 C 1.47813 * 120.14086 * 359.74283 * 9 4 3
11 11 C 1.32572 * 119.99846 * 140.42677 * 10 9 4
12 12 C 1.50695 * 119.99942 * 353.35391 * 11 10 9
13 13 C 1.50693 * 119.99943 * 173.34981 * 11 10 9
14 14 N 1.46906 * 109.47311 * 95.00106 * 13 11 10
15 15 C 1.47472 * 111.00140 * 265.97490 * 14 13 11
16 16 C 1.53512 * 87.93240 * 221.29225 * 15 14 13
17 17 O 1.42891 * 114.17045 * 272.37417 * 16 15 14
18 18 C 1.50703 * 114.34383 * 139.68104 * 16 15 14
19 19 H 1.07994 * 119.99972 * 266.07730 * 18 16 15
20 20 C 1.37872 * 119.99756 * 86.07817 * 18 16 15
21 21 N 1.31517 * 120.00563 * 359.97438 * 20 18 16
22 22 Si 1.86808 * 120.00033 * 179.97438 * 20 18 16
23 23 H 1.48507 * 109.46978 * 89.99920 * 22 20 18
24 24 H 1.48494 * 109.47363 * 209.99986 * 22 20 18
25 25 H 1.48501 * 109.46835 * 329.99854 * 22 20 18
26 26 C 1.47478 * 111.00053 * 169.99894 * 14 13 11
27 27 H 1.08995 * 109.47282 * 300.00028 * 1 2 3
28 28 H 1.09005 * 109.47143 * 60.00176 * 1 2 3
29 29 H 1.08997 * 109.47267 * 180.02562 * 1 2 3
30 30 H 1.09002 * 109.47342 * 60.00170 * 3 2 1
31 31 H 1.09000 * 109.47451 * 299.99994 * 3 2 1
32 32 H 1.07994 * 119.92424 * 0.25286 * 5 4 3
33 33 H 1.08004 * 119.86000 * 180.02562 * 6 5 4
34 34 H 1.07996 * 119.92830 * 179.97438 * 7 6 5
35 35 H 1.07991 * 120.07070 * 180.02562 * 8 7 6
36 36 H 1.07997 * 120.00485 * 320.43104 * 10 9 4
37 37 H 1.09008 * 109.47593 * 88.34578 * 12 11 10
38 38 H 1.08997 * 109.47134 * 208.34366 * 12 11 10
39 39 H 1.08999 * 109.47441 * 328.34086 * 12 11 10
40 40 H 1.09001 * 109.47367 * 215.00277 * 13 11 10
41 41 H 1.09003 * 109.47302 * 335.00232 * 13 11 10
42 42 H 1.09000 * 113.47806 * 336.06044 * 15 14 13
43 43 H 1.09001 * 113.47862 * 106.52625 * 15 14 13
44 44 H 0.96697 * 114.00814 * 273.84296 * 17 16 15
45 45 H 0.96998 * 120.00465 * 179.97438 * 21 20 18
46 46 H 1.09000 * 113.47237 * 253.46694 * 26 14 13
47 47 H 1.08998 * 113.47589 * 23.88317 * 26 14 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0102 1.3054 0.0000
4 6 3.5125 1.1865 0.0006
5 6 4.1076 -0.0586 0.0069
6 6 5.4863 -0.1695 0.0128
7 6 6.2777 0.9656 0.0134
8 6 5.6952 2.2161 0.0072
9 6 4.3047 2.3348 0.0013
10 6 3.6740 3.6716 -0.0044
11 6 4.1885 4.6504 0.7270
12 6 5.3226 4.3647 1.6773
13 6 3.6394 6.0487 0.6078
14 7 2.6320 6.2699 1.6539
15 6 1.2758 5.9826 1.1508
16 6 0.7922 7.2293 1.9047
17 8 0.4218 6.9848 3.2629
18 6 -0.2175 8.0574 1.1524
19 1 0.1095 8.8932 0.5518
20 6 -1.5587 7.7479 1.2310
21 7 -1.9570 6.7297 1.9620
22 14 -2.8105 8.7747 0.2992
23 1 -3.0118 8.2005 -1.0555
24 1 -4.1003 8.7708 1.0351
25 1 -2.3144 10.1691 0.1771
26 6 2.2448 7.6913 1.7226
27 1 -0.3633 0.5138 0.8899
28 1 -0.3634 0.5138 -0.8900
29 1 -0.3633 -1.0276 0.0005
30 1 1.6886 1.8464 0.8900
31 1 1.6886 1.8464 -0.8900
32 1 3.4954 -0.9483 0.0072
33 1 5.9472 -1.1462 0.0172
34 1 7.3536 0.8723 0.0184
35 1 6.3140 3.1012 0.0072
36 1 2.7940 3.8511 -0.6042
37 1 6.2720 4.4693 1.1521
38 1 5.2871 5.0698 2.5077
39 1 5.2289 3.3482 2.0597
40 1 4.4495 6.7684 0.7255
41 1 3.1796 6.1762 -0.3722
42 1 1.1871 6.0683 0.0678
43 1 0.8577 5.0527 1.5362
44 1 -0.4935 6.6939 3.3748
45 1 -2.9006 6.5121 2.0176
46 1 2.6479 8.2095 2.5927
47 1 2.4157 8.2334 0.7925
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000352973180.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:31:48
Heat of formation + Delta-G solvation = -17.364900 kcal
Electronic energy + Delta-G solvation = -26656.106065 eV
Core-core repulsion = 22998.433346 eV
Total energy + Delta-G solvation = -3657.672719 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 317.178 amu
Computer time = 1.15 seconds
Orbital eigenvalues (eV)
-39.79523 -39.16536 -37.60845 -35.82526 -34.00735 -32.16590 -32.07631 -30.75938
-28.30725 -27.59665 -26.81031 -25.74427 -25.31528 -24.86503 -22.76245 -21.73931
-20.91461 -18.68913 -18.24045 -17.23392 -16.63237 -16.40297 -15.90201 -15.43216
-15.15889 -15.05641 -14.87834 -14.55260 -14.36394 -14.05439 -13.93887 -13.48500
-13.10039 -12.99659 -12.68207 -12.59383 -12.17371 -12.02238 -11.84904 -11.75127
-11.63351 -11.50228 -11.36116 -11.08565 -10.97119 -10.86852 -10.67948 -10.47635
-10.24287 -9.99256 -9.89302 -9.51589 -9.23464 -8.70143 -8.67856 -8.26611
-7.93435 -7.90410 -6.30665 -4.40630 1.09703 1.42725 2.49229 3.15874
3.23987 3.27345 3.66056 3.83906 4.21610 4.74204 4.82340 4.90151
5.00768 5.01164 5.08094 5.10660 5.24594 5.27659 5.33223 5.43423
5.49788 5.55021 5.60235 5.65215 5.70861 5.74861 5.84250 5.91421
5.95494 5.98825 6.12073 6.16336 6.17799 6.28289 6.34488 6.39763
6.52407 6.57239 6.66435 6.77563 6.96156 7.01742 7.04554 7.12298
7.19176 7.32167 7.72869 7.91360 7.99864 8.61718 9.29788 9.65909
10.75160
Molecular weight = 317.18amu
Principal moments of inertia in cm(-1)
A = 0.013494 B = 0.003548 C = 0.002980
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2074.466834 B = 7888.791406 C = 9394.939180
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.031 3.969
2 O -0.392 6.392
3 C 0.103 3.897
4 C -0.081 4.081
5 C -0.098 4.098
6 C -0.130 4.130
7 C -0.124 4.124
8 C -0.115 4.115
9 C -0.031 4.031
10 C -0.151 4.151
11 C -0.067 4.067
12 C -0.117 4.117
13 C 0.046 3.954
14 N -0.463 5.463
15 C -0.019 4.019
16 C 0.248 3.752
17 O -0.570 6.570
18 C -0.535 4.535
19 H 0.066 0.934
20 C 0.071 3.929
21 N -0.898 5.898
22 Si 0.903 3.097
23 H -0.279 1.279
24 H -0.283 1.283
25 H -0.272 1.272
26 C 0.002 3.998
27 H 0.046 0.954
28 H 0.042 0.958
29 H 0.085 0.915
30 H 0.069 0.931
31 H 0.063 0.937
32 H 0.130 0.870
33 H 0.118 0.882
34 H 0.119 0.881
35 H 0.128 0.872
36 H 0.117 0.883
37 H 0.064 0.936
38 H 0.068 0.932
39 H 0.066 0.934
40 H 0.072 0.928
41 H 0.047 0.953
42 H 0.057 0.943
43 H 0.066 0.934
44 H 0.390 0.610
45 H 0.271 0.729
46 H 0.071 0.929
47 H 0.063 0.937
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 11.027 -11.266 -5.149 16.584
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.065 4.065
2 O -0.311 6.311
3 C 0.027 3.973
4 C -0.081 4.081
5 C -0.116 4.116
6 C -0.148 4.148
7 C -0.142 4.142
8 C -0.133 4.133
9 C -0.032 4.032
10 C -0.170 4.170
11 C -0.067 4.067
12 C -0.174 4.174
13 C -0.082 4.082
14 N -0.186 5.186
15 C -0.148 4.148
16 C 0.206 3.794
17 O -0.382 6.382
18 C -0.573 4.573
19 H 0.084 0.916
20 C -0.131 4.131
21 N -0.539 5.539
22 Si 0.730 3.270
23 H -0.204 1.204
24 H -0.209 1.209
25 H -0.196 1.196
26 C -0.127 4.127
27 H 0.065 0.935
28 H 0.061 0.939
29 H 0.103 0.897
30 H 0.087 0.913
31 H 0.081 0.919
32 H 0.148 0.852
33 H 0.136 0.864
34 H 0.137 0.863
35 H 0.146 0.854
36 H 0.134 0.866
37 H 0.082 0.918
38 H 0.087 0.913
39 H 0.085 0.915
40 H 0.091 0.909
41 H 0.066 0.934
42 H 0.075 0.925
43 H 0.085 0.915
44 H 0.246 0.754
45 H 0.082 0.918
46 H 0.090 0.910
47 H 0.081 0.919
Dipole moment (debyes) X Y Z Total
from point charges 11.872 -11.699 -4.390 17.236
hybrid contribution -1.762 0.853 -1.509 2.472
sum 10.110 -10.845 -5.899 15.957
Atomic orbital electron populations
1.22755 0.80536 1.02625 1.00629 1.87774 1.19995 1.27706 1.95602
1.21244 0.90036 0.84673 1.01389 1.19776 0.93872 0.93175 1.01311
1.20901 0.94423 0.97390 0.98923 1.21151 0.93780 0.98376 1.01477
1.21054 0.99579 0.92562 1.00976 1.21373 0.93749 0.97711 1.00462
1.18751 0.92797 0.92346 0.99259 1.21379 1.00564 0.91260 1.03773
1.21963 0.95787 0.94473 0.94523 1.21012 0.95716 1.02424 0.98217
1.21770 0.97327 0.93594 0.95494 1.68970 1.03601 1.11721 1.34262
1.24734 0.88669 1.02931 0.98465 1.19341 0.89242 0.89592 0.81203
1.86030 1.36759 1.89923 1.25501 1.21589 0.91689 1.15003 1.29039
0.91576 1.25058 0.98565 0.94646 0.94796 1.69297 1.16863 1.27573
1.40123 0.86410 0.80305 0.80616 0.79620 1.20444 1.20862 1.19628
1.24088 0.98073 0.90442 1.00096 0.93544 0.93892 0.89655 0.91258
0.91874 0.85247 0.86380 0.86302 0.85441 0.86551 0.91772 0.91317
0.91503 0.90918 0.93441 0.92460 0.91523 0.75448 0.91825 0.91037
0.91853
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.34 11.01 101.05 1.11 1.45 16
2 O -0.39 -5.25 9.19 -35.23 -0.32 -5.57 16
3 C 0.10 1.42 5.28 36.00 0.19 1.61 16
4 C -0.08 -1.13 5.91 -104.23 -0.62 -1.75 16
5 C -0.10 -1.26 9.37 -39.64 -0.37 -1.63 16
6 C -0.13 -1.45 10.04 -39.50 -0.40 -1.84 16
7 C -0.12 -1.35 10.03 -39.64 -0.40 -1.74 16
8 C -0.12 -1.39 7.78 -39.19 -0.31 -1.70 16
9 C -0.03 -0.44 5.04 -105.01 -0.53 -0.97 16
10 C -0.15 -2.23 8.53 -37.57 -0.32 -2.55 16
11 C -0.07 -1.01 5.57 -101.26 -0.56 -1.57 16
12 C -0.12 -1.54 8.28 36.00 0.30 -1.24 16
13 C 0.05 0.77 4.97 -4.98 -0.02 0.74 16
14 N -0.46 -9.47 6.32 -246.09 -1.55 -11.02 16
15 C -0.02 -0.42 7.13 -7.55 -0.05 -0.48 16
16 C 0.25 6.21 1.56 -91.24 -0.14 6.06 16
17 O -0.57 -15.42 13.53 -35.23 -0.48 -15.89 16
18 C -0.53 -14.05 8.70 -34.44 -0.30 -14.35 16
19 H 0.07 1.70 7.81 -52.49 -0.41 1.29 16
20 C 0.07 1.85 5.39 -17.82 -0.10 1.75 16
21 N -0.90 -23.72 11.02 55.43 0.61 -23.11 16
22 Si 0.90 20.05 29.54 -169.99 -5.02 15.03 16
23 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16
24 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16
25 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16
26 C 0.00 0.04 7.09 -7.55 -0.05 -0.02 16
27 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16
28 H 0.04 0.44 8.14 -51.93 -0.42 0.01 16
29 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16
30 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16
31 H 0.06 0.84 7.90 -51.93 -0.41 0.43 16
32 H 0.13 1.58 7.00 -52.49 -0.37 1.22 16
33 H 0.12 1.03 8.06 -52.48 -0.42 0.61 16
34 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16
35 H 0.13 1.37 5.76 -52.49 -0.30 1.07 16
36 H 0.12 1.77 7.66 -52.49 -0.40 1.36 16
37 H 0.06 0.69 6.70 -51.92 -0.35 0.34 16
38 H 0.07 0.95 8.11 -51.93 -0.42 0.53 16
39 H 0.07 0.90 6.52 -51.93 -0.34 0.56 16
40 H 0.07 1.10 8.08 -51.93 -0.42 0.68 16
41 H 0.05 0.79 7.19 -51.93 -0.37 0.41 16
42 H 0.06 1.27 7.38 -51.93 -0.38 0.89 16
43 H 0.07 1.60 8.14 -51.93 -0.42 1.18 16
44 H 0.39 10.71 6.33 45.56 0.29 11.00 16
45 H 0.27 6.79 8.31 -40.82 -0.34 6.45 16
46 H 0.07 1.53 8.14 -51.93 -0.42 1.11 16
47 H 0.06 1.27 7.87 -51.93 -0.41 0.86 16
LS Contribution 380.20 15.07 5.73 5.73
Total: -1.00 -28.22 380.20 -10.42 -38.64
By element:
Atomic # 1 Polarization: 21.23 SS G_CDS: -6.81 Total: 14.42 kcal
Atomic # 6 Polarization: -15.65 SS G_CDS: -2.57 Total: -18.22 kcal
Atomic # 7 Polarization: -33.19 SS G_CDS: -0.94 Total: -34.13 kcal
Atomic # 8 Polarization: -20.66 SS G_CDS: -0.80 Total: -21.46 kcal
Atomic # 14 Polarization: 20.05 SS G_CDS: -5.02 Total: 15.03 kcal
Total LS contribution 5.73 Total: 5.73 kcal
Total: -28.22 -10.42 -38.64 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000352973180.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 21.276 kcal
(2) G-P(sol) polarization free energy of solvation -28.222 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.946 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.419 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.640 kcal
(6) G-S(sol) free energy of system = (1) + (5) -17.365 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.16 seconds