Wall clock time and date at job start Tue Mar 31 2020 12:31:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42897 * 113.99897 * 2 1 4 4 C 1.50698 * 109.47059 * 179.97438 * 3 2 1 5 5 C 1.38001 * 120.07348 * 359.72290 * 4 3 2 6 6 C 1.38317 * 120.14273 * 180.25447 * 5 4 3 7 7 C 1.38373 * 120.28754 * 0.04346 * 6 5 4 8 8 C 1.37952 * 120.14212 * 359.95676 * 7 6 5 9 9 C 1.39515 * 120.07259 * 180.02562 * 4 3 2 10 10 C 1.47813 * 120.14086 * 359.74283 * 9 4 3 11 11 C 1.32572 * 119.99846 * 140.42677 * 10 9 4 12 12 C 1.50695 * 119.99942 * 353.35391 * 11 10 9 13 13 C 1.50693 * 119.99943 * 173.34981 * 11 10 9 14 14 N 1.46906 * 109.47311 * 95.00106 * 13 11 10 15 15 C 1.47472 * 111.00140 * 265.97490 * 14 13 11 16 16 C 1.53512 * 87.93240 * 221.29225 * 15 14 13 17 17 O 1.42891 * 114.17045 * 272.37417 * 16 15 14 18 18 C 1.50703 * 114.34383 * 139.68104 * 16 15 14 19 19 H 1.07994 * 119.99972 * 266.07730 * 18 16 15 20 20 C 1.37872 * 119.99756 * 86.07817 * 18 16 15 21 21 N 1.31517 * 120.00563 * 359.97438 * 20 18 16 22 22 Si 1.86808 * 120.00033 * 179.97438 * 20 18 16 23 23 H 1.48507 * 109.46978 * 89.99920 * 22 20 18 24 24 H 1.48494 * 109.47363 * 209.99986 * 22 20 18 25 25 H 1.48501 * 109.46835 * 329.99854 * 22 20 18 26 26 C 1.47478 * 111.00053 * 169.99894 * 14 13 11 27 27 H 1.08995 * 109.47282 * 300.00028 * 1 2 3 28 28 H 1.09005 * 109.47143 * 60.00176 * 1 2 3 29 29 H 1.08997 * 109.47267 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47342 * 60.00170 * 3 2 1 31 31 H 1.09000 * 109.47451 * 299.99994 * 3 2 1 32 32 H 1.07994 * 119.92424 * 0.25286 * 5 4 3 33 33 H 1.08004 * 119.86000 * 180.02562 * 6 5 4 34 34 H 1.07996 * 119.92830 * 179.97438 * 7 6 5 35 35 H 1.07991 * 120.07070 * 180.02562 * 8 7 6 36 36 H 1.07997 * 120.00485 * 320.43104 * 10 9 4 37 37 H 1.09008 * 109.47593 * 88.34578 * 12 11 10 38 38 H 1.08997 * 109.47134 * 208.34366 * 12 11 10 39 39 H 1.08999 * 109.47441 * 328.34086 * 12 11 10 40 40 H 1.09001 * 109.47367 * 215.00277 * 13 11 10 41 41 H 1.09003 * 109.47302 * 335.00232 * 13 11 10 42 42 H 1.09000 * 113.47806 * 336.06044 * 15 14 13 43 43 H 1.09001 * 113.47862 * 106.52625 * 15 14 13 44 44 H 0.96697 * 114.00814 * 273.84296 * 17 16 15 45 45 H 0.96998 * 120.00465 * 179.97438 * 21 20 18 46 46 H 1.09000 * 113.47237 * 253.46694 * 26 14 13 47 47 H 1.08998 * 113.47589 * 23.88317 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5125 1.1865 0.0006 5 6 4.1076 -0.0586 0.0069 6 6 5.4863 -0.1695 0.0128 7 6 6.2777 0.9656 0.0134 8 6 5.6952 2.2161 0.0072 9 6 4.3047 2.3348 0.0013 10 6 3.6740 3.6716 -0.0044 11 6 4.1885 4.6504 0.7270 12 6 5.3226 4.3647 1.6773 13 6 3.6394 6.0487 0.6078 14 7 2.6320 6.2699 1.6539 15 6 1.2758 5.9826 1.1508 16 6 0.7922 7.2293 1.9047 17 8 0.4218 6.9848 3.2629 18 6 -0.2175 8.0574 1.1524 19 1 0.1095 8.8932 0.5518 20 6 -1.5587 7.7479 1.2310 21 7 -1.9570 6.7297 1.9620 22 14 -2.8105 8.7747 0.2992 23 1 -3.0118 8.2005 -1.0555 24 1 -4.1003 8.7708 1.0351 25 1 -2.3144 10.1691 0.1771 26 6 2.2448 7.6913 1.7226 27 1 -0.3633 0.5138 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 1.6886 1.8464 0.8900 31 1 1.6886 1.8464 -0.8900 32 1 3.4954 -0.9483 0.0072 33 1 5.9472 -1.1462 0.0172 34 1 7.3536 0.8723 0.0184 35 1 6.3140 3.1012 0.0072 36 1 2.7940 3.8511 -0.6042 37 1 6.2720 4.4693 1.1521 38 1 5.2871 5.0698 2.5077 39 1 5.2289 3.3482 2.0597 40 1 4.4495 6.7684 0.7255 41 1 3.1796 6.1762 -0.3722 42 1 1.1871 6.0683 0.0678 43 1 0.8577 5.0527 1.5362 44 1 -0.4935 6.6939 3.3748 45 1 -2.9006 6.5121 2.0176 46 1 2.6479 8.2095 2.5927 47 1 2.4157 8.2334 0.7925 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000352973180.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:31:48 Heat of formation + Delta-G solvation = -17.364900 kcal Electronic energy + Delta-G solvation = -26656.106065 eV Core-core repulsion = 22998.433346 eV Total energy + Delta-G solvation = -3657.672719 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -39.79523 -39.16536 -37.60845 -35.82526 -34.00735 -32.16590 -32.07631 -30.75938 -28.30725 -27.59665 -26.81031 -25.74427 -25.31528 -24.86503 -22.76245 -21.73931 -20.91461 -18.68913 -18.24045 -17.23392 -16.63237 -16.40297 -15.90201 -15.43216 -15.15889 -15.05641 -14.87834 -14.55260 -14.36394 -14.05439 -13.93887 -13.48500 -13.10039 -12.99659 -12.68207 -12.59383 -12.17371 -12.02238 -11.84904 -11.75127 -11.63351 -11.50228 -11.36116 -11.08565 -10.97119 -10.86852 -10.67948 -10.47635 -10.24287 -9.99256 -9.89302 -9.51589 -9.23464 -8.70143 -8.67856 -8.26611 -7.93435 -7.90410 -6.30665 -4.40630 1.09703 1.42725 2.49229 3.15874 3.23987 3.27345 3.66056 3.83906 4.21610 4.74204 4.82340 4.90151 5.00768 5.01164 5.08094 5.10660 5.24594 5.27659 5.33223 5.43423 5.49788 5.55021 5.60235 5.65215 5.70861 5.74861 5.84250 5.91421 5.95494 5.98825 6.12073 6.16336 6.17799 6.28289 6.34488 6.39763 6.52407 6.57239 6.66435 6.77563 6.96156 7.01742 7.04554 7.12298 7.19176 7.32167 7.72869 7.91360 7.99864 8.61718 9.29788 9.65909 10.75160 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.013494 B = 0.003548 C = 0.002980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2074.466834 B = 7888.791406 C = 9394.939180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.392 6.392 3 C 0.103 3.897 4 C -0.081 4.081 5 C -0.098 4.098 6 C -0.130 4.130 7 C -0.124 4.124 8 C -0.115 4.115 9 C -0.031 4.031 10 C -0.151 4.151 11 C -0.067 4.067 12 C -0.117 4.117 13 C 0.046 3.954 14 N -0.463 5.463 15 C -0.019 4.019 16 C 0.248 3.752 17 O -0.570 6.570 18 C -0.535 4.535 19 H 0.066 0.934 20 C 0.071 3.929 21 N -0.898 5.898 22 Si 0.903 3.097 23 H -0.279 1.279 24 H -0.283 1.283 25 H -0.272 1.272 26 C 0.002 3.998 27 H 0.046 0.954 28 H 0.042 0.958 29 H 0.085 0.915 30 H 0.069 0.931 31 H 0.063 0.937 32 H 0.130 0.870 33 H 0.118 0.882 34 H 0.119 0.881 35 H 0.128 0.872 36 H 0.117 0.883 37 H 0.064 0.936 38 H 0.068 0.932 39 H 0.066 0.934 40 H 0.072 0.928 41 H 0.047 0.953 42 H 0.057 0.943 43 H 0.066 0.934 44 H 0.390 0.610 45 H 0.271 0.729 46 H 0.071 0.929 47 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.027 -11.266 -5.149 16.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.311 6.311 3 C 0.027 3.973 4 C -0.081 4.081 5 C -0.116 4.116 6 C -0.148 4.148 7 C -0.142 4.142 8 C -0.133 4.133 9 C -0.032 4.032 10 C -0.170 4.170 11 C -0.067 4.067 12 C -0.174 4.174 13 C -0.082 4.082 14 N -0.186 5.186 15 C -0.148 4.148 16 C 0.206 3.794 17 O -0.382 6.382 18 C -0.573 4.573 19 H 0.084 0.916 20 C -0.131 4.131 21 N -0.539 5.539 22 Si 0.730 3.270 23 H -0.204 1.204 24 H -0.209 1.209 25 H -0.196 1.196 26 C -0.127 4.127 27 H 0.065 0.935 28 H 0.061 0.939 29 H 0.103 0.897 30 H 0.087 0.913 31 H 0.081 0.919 32 H 0.148 0.852 33 H 0.136 0.864 34 H 0.137 0.863 35 H 0.146 0.854 36 H 0.134 0.866 37 H 0.082 0.918 38 H 0.087 0.913 39 H 0.085 0.915 40 H 0.091 0.909 41 H 0.066 0.934 42 H 0.075 0.925 43 H 0.085 0.915 44 H 0.246 0.754 45 H 0.082 0.918 46 H 0.090 0.910 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 11.872 -11.699 -4.390 17.236 hybrid contribution -1.762 0.853 -1.509 2.472 sum 10.110 -10.845 -5.899 15.957 Atomic orbital electron populations 1.22755 0.80536 1.02625 1.00629 1.87774 1.19995 1.27706 1.95602 1.21244 0.90036 0.84673 1.01389 1.19776 0.93872 0.93175 1.01311 1.20901 0.94423 0.97390 0.98923 1.21151 0.93780 0.98376 1.01477 1.21054 0.99579 0.92562 1.00976 1.21373 0.93749 0.97711 1.00462 1.18751 0.92797 0.92346 0.99259 1.21379 1.00564 0.91260 1.03773 1.21963 0.95787 0.94473 0.94523 1.21012 0.95716 1.02424 0.98217 1.21770 0.97327 0.93594 0.95494 1.68970 1.03601 1.11721 1.34262 1.24734 0.88669 1.02931 0.98465 1.19341 0.89242 0.89592 0.81203 1.86030 1.36759 1.89923 1.25501 1.21589 0.91689 1.15003 1.29039 0.91576 1.25058 0.98565 0.94646 0.94796 1.69297 1.16863 1.27573 1.40123 0.86410 0.80305 0.80616 0.79620 1.20444 1.20862 1.19628 1.24088 0.98073 0.90442 1.00096 0.93544 0.93892 0.89655 0.91258 0.91874 0.85247 0.86380 0.86302 0.85441 0.86551 0.91772 0.91317 0.91503 0.90918 0.93441 0.92460 0.91523 0.75448 0.91825 0.91037 0.91853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 11.01 101.05 1.11 1.45 16 2 O -0.39 -5.25 9.19 -35.23 -0.32 -5.57 16 3 C 0.10 1.42 5.28 36.00 0.19 1.61 16 4 C -0.08 -1.13 5.91 -104.23 -0.62 -1.75 16 5 C -0.10 -1.26 9.37 -39.64 -0.37 -1.63 16 6 C -0.13 -1.45 10.04 -39.50 -0.40 -1.84 16 7 C -0.12 -1.35 10.03 -39.64 -0.40 -1.74 16 8 C -0.12 -1.39 7.78 -39.19 -0.31 -1.70 16 9 C -0.03 -0.44 5.04 -105.01 -0.53 -0.97 16 10 C -0.15 -2.23 8.53 -37.57 -0.32 -2.55 16 11 C -0.07 -1.01 5.57 -101.26 -0.56 -1.57 16 12 C -0.12 -1.54 8.28 36.00 0.30 -1.24 16 13 C 0.05 0.77 4.97 -4.98 -0.02 0.74 16 14 N -0.46 -9.47 6.32 -246.09 -1.55 -11.02 16 15 C -0.02 -0.42 7.13 -7.55 -0.05 -0.48 16 16 C 0.25 6.21 1.56 -91.24 -0.14 6.06 16 17 O -0.57 -15.42 13.53 -35.23 -0.48 -15.89 16 18 C -0.53 -14.05 8.70 -34.44 -0.30 -14.35 16 19 H 0.07 1.70 7.81 -52.49 -0.41 1.29 16 20 C 0.07 1.85 5.39 -17.82 -0.10 1.75 16 21 N -0.90 -23.72 11.02 55.43 0.61 -23.11 16 22 Si 0.90 20.05 29.54 -169.99 -5.02 15.03 16 23 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 24 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 25 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 26 C 0.00 0.04 7.09 -7.55 -0.05 -0.02 16 27 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.04 0.44 8.14 -51.93 -0.42 0.01 16 29 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 31 H 0.06 0.84 7.90 -51.93 -0.41 0.43 16 32 H 0.13 1.58 7.00 -52.49 -0.37 1.22 16 33 H 0.12 1.03 8.06 -52.48 -0.42 0.61 16 34 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 35 H 0.13 1.37 5.76 -52.49 -0.30 1.07 16 36 H 0.12 1.77 7.66 -52.49 -0.40 1.36 16 37 H 0.06 0.69 6.70 -51.92 -0.35 0.34 16 38 H 0.07 0.95 8.11 -51.93 -0.42 0.53 16 39 H 0.07 0.90 6.52 -51.93 -0.34 0.56 16 40 H 0.07 1.10 8.08 -51.93 -0.42 0.68 16 41 H 0.05 0.79 7.19 -51.93 -0.37 0.41 16 42 H 0.06 1.27 7.38 -51.93 -0.38 0.89 16 43 H 0.07 1.60 8.14 -51.93 -0.42 1.18 16 44 H 0.39 10.71 6.33 45.56 0.29 11.00 16 45 H 0.27 6.79 8.31 -40.82 -0.34 6.45 16 46 H 0.07 1.53 8.14 -51.93 -0.42 1.11 16 47 H 0.06 1.27 7.87 -51.93 -0.41 0.86 16 LS Contribution 380.20 15.07 5.73 5.73 Total: -1.00 -28.22 380.20 -10.42 -38.64 By element: Atomic # 1 Polarization: 21.23 SS G_CDS: -6.81 Total: 14.42 kcal Atomic # 6 Polarization: -15.65 SS G_CDS: -2.57 Total: -18.22 kcal Atomic # 7 Polarization: -33.19 SS G_CDS: -0.94 Total: -34.13 kcal Atomic # 8 Polarization: -20.66 SS G_CDS: -0.80 Total: -21.46 kcal Atomic # 14 Polarization: 20.05 SS G_CDS: -5.02 Total: 15.03 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -28.22 -10.42 -38.64 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352973180.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.276 kcal (2) G-P(sol) polarization free energy of solvation -28.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.640 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds