Wall clock time and date at job start Tue Mar 31 2020 12:31:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42897 * 113.99897 * 2 1 4 4 C 1.50698 * 109.47059 * 179.97438 * 3 2 1 5 5 C 1.38001 * 120.07348 * 359.72290 * 4 3 2 6 6 C 1.38317 * 120.14273 * 180.25447 * 5 4 3 7 7 C 1.38373 * 120.28754 * 0.04346 * 6 5 4 8 8 C 1.37952 * 120.14212 * 359.95676 * 7 6 5 9 9 C 1.39515 * 120.07259 * 180.02562 * 4 3 2 10 10 C 1.47813 * 120.14086 * 359.74283 * 9 4 3 11 11 C 1.32572 * 119.99846 * 140.42677 * 10 9 4 12 12 C 1.50695 * 119.99942 * 353.35391 * 11 10 9 13 13 C 1.50693 * 119.99943 * 173.34981 * 11 10 9 14 14 N 1.46906 * 109.47311 * 95.00106 * 13 11 10 15 15 C 1.47472 * 111.00140 * 265.97490 * 14 13 11 16 16 C 1.53512 * 87.93240 * 221.29225 * 15 14 13 17 17 O 1.42891 * 114.17045 * 272.37417 * 16 15 14 18 18 C 1.50703 * 114.34383 * 139.68104 * 16 15 14 19 19 H 1.07994 * 119.99972 * 266.07730 * 18 16 15 20 20 C 1.37872 * 119.99756 * 86.07817 * 18 16 15 21 21 N 1.31517 * 120.00563 * 359.97438 * 20 18 16 22 22 Si 1.86808 * 120.00033 * 179.97438 * 20 18 16 23 23 H 1.48507 * 109.46978 * 89.99920 * 22 20 18 24 24 H 1.48494 * 109.47363 * 209.99986 * 22 20 18 25 25 H 1.48501 * 109.46835 * 329.99854 * 22 20 18 26 26 C 1.47478 * 111.00053 * 169.99894 * 14 13 11 27 27 H 1.08995 * 109.47282 * 300.00028 * 1 2 3 28 28 H 1.09005 * 109.47143 * 60.00176 * 1 2 3 29 29 H 1.08997 * 109.47267 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47342 * 60.00170 * 3 2 1 31 31 H 1.09000 * 109.47451 * 299.99994 * 3 2 1 32 32 H 1.07994 * 119.92424 * 0.25286 * 5 4 3 33 33 H 1.08004 * 119.86000 * 180.02562 * 6 5 4 34 34 H 1.07996 * 119.92830 * 179.97438 * 7 6 5 35 35 H 1.07991 * 120.07070 * 180.02562 * 8 7 6 36 36 H 1.07997 * 120.00485 * 320.43104 * 10 9 4 37 37 H 1.09008 * 109.47593 * 88.34578 * 12 11 10 38 38 H 1.08997 * 109.47134 * 208.34366 * 12 11 10 39 39 H 1.08999 * 109.47441 * 328.34086 * 12 11 10 40 40 H 1.09001 * 109.47367 * 215.00277 * 13 11 10 41 41 H 1.09003 * 109.47302 * 335.00232 * 13 11 10 42 42 H 1.09000 * 113.47806 * 336.06044 * 15 14 13 43 43 H 1.09001 * 113.47862 * 106.52625 * 15 14 13 44 44 H 0.96697 * 114.00814 * 273.84296 * 17 16 15 45 45 H 0.96998 * 120.00465 * 179.97438 * 21 20 18 46 46 H 1.09000 * 113.47237 * 253.46694 * 26 14 13 47 47 H 1.08998 * 113.47589 * 23.88317 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5125 1.1865 0.0006 5 6 4.1076 -0.0586 0.0069 6 6 5.4863 -0.1695 0.0128 7 6 6.2777 0.9656 0.0134 8 6 5.6952 2.2161 0.0072 9 6 4.3047 2.3348 0.0013 10 6 3.6740 3.6716 -0.0044 11 6 4.1885 4.6504 0.7270 12 6 5.3226 4.3647 1.6773 13 6 3.6394 6.0487 0.6078 14 7 2.6320 6.2699 1.6539 15 6 1.2758 5.9826 1.1508 16 6 0.7922 7.2293 1.9047 17 8 0.4218 6.9848 3.2629 18 6 -0.2175 8.0574 1.1524 19 1 0.1095 8.8932 0.5518 20 6 -1.5587 7.7479 1.2310 21 7 -1.9570 6.7297 1.9620 22 14 -2.8105 8.7747 0.2992 23 1 -3.0118 8.2005 -1.0555 24 1 -4.1003 8.7708 1.0351 25 1 -2.3144 10.1691 0.1771 26 6 2.2448 7.6913 1.7226 27 1 -0.3633 0.5138 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 1.6886 1.8464 0.8900 31 1 1.6886 1.8464 -0.8900 32 1 3.4954 -0.9483 0.0072 33 1 5.9472 -1.1462 0.0172 34 1 7.3536 0.8723 0.0184 35 1 6.3140 3.1012 0.0072 36 1 2.7940 3.8511 -0.6042 37 1 6.2720 4.4693 1.1521 38 1 5.2871 5.0698 2.5077 39 1 5.2289 3.3482 2.0597 40 1 4.4495 6.7684 0.7255 41 1 3.1796 6.1762 -0.3722 42 1 1.1871 6.0683 0.0678 43 1 0.8577 5.0527 1.5362 44 1 -0.4935 6.6939 3.3748 45 1 -2.9006 6.5121 2.0176 46 1 2.6479 8.2095 2.5927 47 1 2.4157 8.2334 0.7925 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000352973180.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:31:46 Heat of formation + Delta-G solvation = -35.611611 kcal Electronic energy + Delta-G solvation = -26656.897301 eV Core-core repulsion = 22998.433346 eV Total energy + Delta-G solvation = -3658.463955 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -41.10544 -40.56224 -38.63418 -37.16358 -35.73851 -34.11013 -33.12940 -31.90620 -29.81027 -28.60441 -27.99493 -27.32709 -26.64834 -26.33117 -24.24301 -22.85222 -21.95064 -20.52902 -19.57905 -19.00721 -17.63858 -17.41511 -17.14940 -16.95551 -16.79197 -16.43665 -16.16263 -15.84092 -15.67931 -15.47011 -15.12327 -14.78727 -14.39719 -14.21883 -13.93618 -13.77871 -13.62687 -13.40529 -13.35573 -13.13984 -13.00782 -12.76854 -12.71762 -12.51392 -12.36380 -12.29057 -12.17168 -11.91917 -11.79838 -11.50293 -11.20606 -10.90883 -10.69958 -10.44064 -10.09950 -9.68780 -9.63863 -9.01391 -8.26932 -6.45021 0.09571 0.49039 1.38029 1.40346 1.43134 1.53079 2.35530 2.67459 2.88255 2.94119 3.29747 3.69311 3.83236 3.89383 4.05202 4.10610 4.12199 4.19270 4.22749 4.28048 4.32143 4.37605 4.46220 4.48994 4.50592 4.58032 4.62965 4.67996 4.72688 4.79094 4.80528 4.89748 4.90043 5.04327 5.11163 5.13555 5.21934 5.34893 5.37922 5.46700 5.56974 5.62079 5.72956 5.73630 5.92024 5.95250 6.10249 6.12918 6.31389 6.61172 7.28402 7.54283 8.78063 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.013494 B = 0.003548 C = 0.002980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2074.466834 B = 7888.791406 C = 9394.939180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.400 6.400 3 C 0.107 3.893 4 C -0.102 4.102 5 C -0.110 4.110 6 C -0.125 4.125 7 C -0.120 4.120 8 C -0.116 4.116 9 C -0.051 4.051 10 C -0.146 4.146 11 C -0.080 4.080 12 C -0.110 4.110 13 C 0.047 3.953 14 N -0.467 5.467 15 C -0.004 4.004 16 C 0.219 3.781 17 O -0.584 6.584 18 C -0.558 4.558 19 H 0.067 0.933 20 C 0.027 3.973 21 N -0.920 5.920 22 Si 0.968 3.032 23 H -0.273 1.273 24 H -0.280 1.280 25 H -0.268 1.268 26 C 0.012 3.988 27 H 0.039 0.961 28 H 0.047 0.953 29 H 0.109 0.891 30 H 0.049 0.951 31 H 0.061 0.939 32 H 0.130 0.870 33 H 0.146 0.854 34 H 0.152 0.848 35 H 0.143 0.857 36 H 0.102 0.898 37 H 0.093 0.907 38 H 0.059 0.941 39 H 0.062 0.938 40 H 0.093 0.907 41 H 0.047 0.953 42 H 0.058 0.942 43 H 0.043 0.957 44 H 0.383 0.617 45 H 0.274 0.726 46 H 0.072 0.928 47 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.866 -11.728 -6.165 18.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.320 6.320 3 C 0.031 3.969 4 C -0.102 4.102 5 C -0.128 4.128 6 C -0.143 4.143 7 C -0.138 4.138 8 C -0.133 4.133 9 C -0.051 4.051 10 C -0.166 4.166 11 C -0.081 4.081 12 C -0.166 4.166 13 C -0.080 4.080 14 N -0.189 5.189 15 C -0.133 4.133 16 C 0.178 3.822 17 O -0.396 6.396 18 C -0.596 4.596 19 H 0.085 0.915 20 C -0.172 4.172 21 N -0.561 5.561 22 Si 0.793 3.207 23 H -0.198 1.198 24 H -0.206 1.206 25 H -0.192 1.192 26 C -0.117 4.117 27 H 0.058 0.942 28 H 0.066 0.934 29 H 0.128 0.872 30 H 0.067 0.933 31 H 0.079 0.921 32 H 0.148 0.852 33 H 0.164 0.836 34 H 0.169 0.831 35 H 0.161 0.839 36 H 0.120 0.880 37 H 0.111 0.889 38 H 0.078 0.922 39 H 0.080 0.920 40 H 0.111 0.889 41 H 0.065 0.935 42 H 0.076 0.924 43 H 0.061 0.939 44 H 0.238 0.762 45 H 0.084 0.916 46 H 0.090 0.910 47 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 13.727 -12.162 -5.409 19.120 hybrid contribution -2.306 0.912 -1.200 2.755 sum 11.420 -11.250 -6.609 17.340 Atomic orbital electron populations 1.22940 0.79400 1.04213 1.00539 1.87757 1.21292 1.27344 1.95579 1.21125 0.90743 0.84776 1.00286 1.19891 0.93685 0.94029 1.02571 1.21031 0.95540 0.96818 0.99428 1.21514 0.93024 1.00002 0.99787 1.21442 1.01251 0.91732 0.99342 1.21598 0.92922 0.99075 0.99724 1.18795 0.93841 0.91534 1.00914 1.21395 0.99896 0.92063 1.03209 1.21981 0.96978 0.93598 0.95495 1.20977 0.96240 1.01760 0.97601 1.21819 0.96712 0.95358 0.94159 1.68874 1.03209 1.10846 1.35924 1.24446 0.90119 1.00745 0.98016 1.19732 0.90984 0.91084 0.80437 1.86009 1.36293 1.90080 1.27175 1.21860 0.92635 1.15467 1.29614 0.91481 1.25821 1.00264 0.95616 0.95548 1.69378 1.17314 1.28560 1.40842 0.85408 0.77829 0.79092 0.78419 1.19850 1.20566 1.19245 1.23999 0.95634 0.91209 1.00862 0.94208 0.93426 0.87248 0.93314 0.92110 0.85230 0.83585 0.83065 0.83938 0.87966 0.88913 0.92177 0.91961 0.88867 0.93512 0.92374 0.93885 0.76227 0.91593 0.90974 0.90220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.55 11.01 113.37 1.25 1.80 16 2 O -0.40 -10.94 9.19 -148.98 -1.37 -12.31 16 3 C 0.11 3.10 5.28 71.24 0.38 3.48 16 4 C -0.10 -2.85 5.91 -19.61 -0.12 -2.97 16 5 C -0.11 -2.71 9.37 22.23 0.21 -2.50 16 6 C -0.13 -2.45 10.04 22.32 0.22 -2.23 16 7 C -0.12 -2.21 10.03 22.23 0.22 -1.98 16 8 C -0.12 -2.52 7.78 22.52 0.18 -2.35 16 9 C -0.05 -1.38 5.04 -20.12 -0.10 -1.48 16 10 C -0.15 -4.35 8.53 23.65 0.20 -4.15 16 11 C -0.08 -2.35 5.57 -17.60 -0.10 -2.44 16 12 C -0.11 -2.69 8.28 71.23 0.59 -2.10 16 13 C 0.05 1.53 4.97 85.55 0.42 1.95 16 14 N -0.47 -19.07 6.32 -932.88 -5.89 -24.96 16 15 C 0.00 -0.17 7.13 83.58 0.60 0.43 16 16 C 0.22 11.15 1.56 -11.19 -0.02 11.13 16 17 O -0.58 -32.51 13.53 -148.98 -2.02 -34.53 16 18 C -0.56 -29.59 8.70 25.60 0.22 -29.36 16 19 H 0.07 3.44 7.81 -2.91 -0.02 3.42 16 20 C 0.03 1.42 5.39 84.65 0.46 1.87 16 21 N -0.92 -49.53 11.02 21.45 0.24 -49.30 16 22 Si 0.97 41.13 29.54 68.60 2.03 43.16 16 23 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 24 H -0.28 -11.70 7.11 99.48 0.71 -10.99 16 25 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 26 C 0.01 0.50 7.09 83.58 0.59 1.09 16 27 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 28 H 0.05 0.99 8.14 -2.38 -0.02 0.97 16 29 H 0.11 1.84 8.14 -2.39 -0.02 1.82 16 30 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 31 H 0.06 1.72 7.90 -2.39 -0.02 1.71 16 32 H 0.13 3.09 7.00 -2.91 -0.02 3.07 16 33 H 0.15 2.00 8.06 -2.91 -0.02 1.97 16 34 H 0.15 1.81 8.06 -2.91 -0.02 1.78 16 35 H 0.14 2.61 5.76 -2.92 -0.02 2.59 16 36 H 0.10 3.25 7.66 -2.91 -0.02 3.22 16 37 H 0.09 1.71 6.70 -2.38 -0.02 1.69 16 38 H 0.06 1.57 8.11 -2.39 -0.02 1.55 16 39 H 0.06 1.59 6.52 -2.39 -0.02 1.57 16 40 H 0.09 2.63 8.08 -2.39 -0.02 2.61 16 41 H 0.05 1.52 7.19 -2.39 -0.02 1.50 16 42 H 0.06 2.64 7.38 -2.39 -0.02 2.62 16 43 H 0.04 2.16 8.14 -2.39 -0.02 2.14 16 44 H 0.38 21.87 6.33 -74.06 -0.47 21.40 16 45 H 0.27 13.91 8.31 -92.71 -0.77 13.14 16 46 H 0.07 3.05 8.14 -2.39 -0.02 3.04 16 47 H 0.08 3.11 7.87 -2.39 -0.02 3.09 16 Total: -1.00 -61.09 380.20 -1.31 -62.40 By element: Atomic # 1 Polarization: 44.85 SS G_CDS: 0.49 Total: 45.35 kcal Atomic # 6 Polarization: -35.01 SS G_CDS: 5.21 Total: -29.81 kcal Atomic # 7 Polarization: -68.60 SS G_CDS: -5.66 Total: -74.26 kcal Atomic # 8 Polarization: -43.46 SS G_CDS: -3.38 Total: -46.84 kcal Atomic # 14 Polarization: 41.13 SS G_CDS: 2.03 Total: 43.16 kcal Total: -61.09 -1.31 -62.40 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352973180.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.792 kcal (2) G-P(sol) polarization free energy of solvation -61.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.403 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds