Wall clock time and date at job start Tue Mar 31 2020 12:03:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53004 * 109.47051 * 2 1 4 4 C 1.53001 * 109.46772 * 301.91807 * 3 2 1 5 5 C 1.53005 * 109.46676 * 184.84572 * 4 3 2 6 6 C 1.52998 * 109.47116 * 181.91578 * 3 2 1 7 7 C 1.52998 * 109.47008 * 299.99995 * 6 3 2 8 8 C 1.53002 * 109.47035 * 299.99889 * 7 6 3 9 9 N 1.46504 * 109.46730 * 180.02562 * 8 7 6 10 10 S 1.65594 * 120.00213 * 95.00364 * 9 8 7 11 11 O 1.42098 * 104.27872 * 181.06809 * 10 9 8 12 12 O 1.42103 * 104.27742 * 308.92201 * 10 9 8 13 13 C 1.81401 * 104.45302 * 64.99209 * 10 9 8 14 14 C 1.52995 * 109.47391 * 180.02562 * 13 10 9 15 15 C 1.50695 * 109.47291 * 180.02562 * 14 13 10 16 16 H 1.08003 * 119.99823 * 359.97438 * 15 14 13 17 17 C 1.37885 * 120.00173 * 180.02562 * 15 14 13 18 18 N 1.31506 * 119.99861 * 359.97438 * 17 15 14 19 19 Si 1.86793 * 119.99832 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.47528 * 60.00235 * 19 17 15 21 21 H 1.48499 * 109.47093 * 179.97438 * 19 17 15 22 22 H 1.48502 * 109.47262 * 299.99872 * 19 17 15 23 23 C 1.52998 * 109.47132 * 60.00187 * 8 7 6 24 24 C 1.52998 * 109.47008 * 299.99829 * 23 8 7 25 25 H 1.08997 * 109.47162 * 178.66166 * 1 2 3 26 26 H 1.09007 * 109.47025 * 298.66096 * 1 2 3 27 27 H 1.08989 * 109.47386 * 58.65814 * 1 2 3 28 28 H 1.09003 * 109.47189 * 119.99825 * 2 1 3 29 29 H 1.09002 * 109.47058 * 239.99716 * 2 1 3 30 30 H 1.09002 * 109.47253 * 304.83784 * 4 3 2 31 31 H 1.08995 * 109.47437 * 64.84256 * 4 3 2 32 32 H 1.08998 * 109.47049 * 65.67598 * 5 4 3 33 33 H 1.08997 * 109.46735 * 185.67136 * 5 4 3 34 34 H 1.08997 * 109.47072 * 305.66708 * 5 4 3 35 35 H 1.09008 * 109.47197 * 59.99809 * 6 3 2 36 36 H 1.08994 * 109.47279 * 179.97438 * 6 3 2 37 37 H 1.09002 * 109.46823 * 180.02562 * 7 6 3 38 38 H 1.09004 * 109.47587 * 60.00098 * 7 6 3 39 39 H 1.09004 * 109.47033 * 299.99953 * 8 7 6 40 40 H 0.97004 * 119.99825 * 274.99685 * 9 8 7 41 41 H 1.09000 * 109.47176 * 300.00580 * 13 10 9 42 42 H 1.09006 * 109.46665 * 60.00455 * 13 10 9 43 43 H 1.09005 * 109.46868 * 300.00358 * 14 13 10 44 44 H 1.08997 * 109.47430 * 59.99804 * 14 13 10 45 45 H 0.96999 * 120.00552 * 179.97438 * 18 17 15 46 46 H 1.08997 * 109.46793 * 179.97438 * 23 8 7 47 47 H 1.09004 * 109.46867 * 60.00172 * 23 8 7 48 48 H 1.08994 * 109.47103 * 300.00111 * 24 23 8 49 49 H 1.09002 * 109.46823 * 179.97438 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.4909 2.1775 -1.2244 5 6 2.0960 3.5813 -1.2903 6 6 3.5693 1.4428 -0.0482 7 6 4.1182 0.7078 1.1762 8 6 3.6480 1.4150 2.4488 9 7 4.1742 0.7115 3.6212 10 16 5.5806 1.2218 4.3309 11 8 5.7875 0.3058 5.3973 12 8 6.5034 1.3131 3.2541 13 6 5.1897 2.8717 4.9757 14 6 6.4253 3.4568 5.6626 15 6 6.1003 4.8271 6.1988 16 1 5.1115 5.2397 6.0628 17 6 7.0657 5.5547 6.8621 18 7 8.2698 5.0525 7.0273 19 14 6.6630 7.2535 7.5261 20 1 5.5533 7.1513 8.5076 21 1 7.8622 7.8214 8.1929 22 1 6.2533 8.1384 6.4061 23 6 2.1187 1.4148 2.4971 24 6 1.5698 2.1498 1.2726 25 1 -0.3633 -1.0273 -0.0240 26 1 -0.3633 0.4929 0.9018 27 1 -0.3633 0.5345 -0.8776 28 1 1.8934 -0.5138 0.8900 29 1 1.8934 -0.5139 -0.8900 30 1 1.7535 1.6261 -2.1273 31 1 0.4063 2.2526 -1.1470 32 1 3.1687 3.5066 -1.4688 33 1 1.6306 4.1397 -2.1025 34 1 1.9196 4.0976 -0.3467 35 1 3.9043 0.9390 -0.9549 36 1 3.9326 2.4704 -0.0487 37 1 5.2077 0.7084 1.1420 38 1 3.7549 -0.3199 1.1763 39 1 4.0113 2.4427 2.4488 40 1 3.6986 -0.0532 3.9819 41 1 4.8897 3.5214 4.1535 42 1 4.3747 2.7967 5.6956 43 1 6.7257 2.8071 6.4848 44 1 7.2401 3.5318 4.9426 45 1 8.9491 5.5644 7.4936 46 1 1.7838 1.9182 3.4039 47 1 1.7554 0.3870 2.4971 48 1 1.9331 3.1774 1.2726 49 1 0.4803 2.1492 1.3068 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000353824568.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:03:15 Heat of formation + Delta-G solvation = -118.734448 kcal Electronic energy + Delta-G solvation = -26137.047906 eV Core-core repulsion = 22610.423426 eV Total energy + Delta-G solvation = -3526.624481 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.181 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.33392 -36.60709 -35.97138 -35.36951 -33.88591 -32.19629 -31.84724 -31.16257 -30.87621 -27.42754 -25.59726 -24.24192 -23.36150 -22.57665 -21.69517 -21.11057 -18.97160 -18.15797 -17.27586 -16.57542 -16.24257 -15.41685 -15.37327 -15.13779 -14.87607 -14.73999 -14.54972 -14.46325 -13.85581 -13.37297 -13.26851 -12.92029 -12.56339 -12.50477 -12.29545 -12.24033 -12.03304 -11.96038 -11.74931 -11.56537 -11.53430 -11.47225 -11.38228 -11.32890 -11.06529 -10.96882 -10.93205 -10.63384 -10.43961 -10.36522 -10.25775 -10.16127 -10.03631 -9.73703 -9.40880 -8.98569 -8.49723 -6.11920 -4.17571 0.83359 3.17523 3.27212 3.32078 3.33826 4.25944 4.37952 4.41805 4.48350 4.51013 4.71111 4.77587 4.94316 5.01931 5.02677 5.15953 5.21554 5.23418 5.24806 5.27259 5.30855 5.38576 5.49706 5.53440 5.56865 5.66823 5.68261 5.73583 5.74146 5.80015 5.85867 5.88626 5.93639 5.96473 6.03937 6.09620 6.12803 6.24652 6.28164 6.40346 6.44070 6.50844 7.16121 7.30819 7.37330 7.80752 8.18189 8.85575 9.47034 10.99129 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.016217 B = 0.003376 C = 0.003035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1726.132711 B = 8292.964398 C = 9224.227360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.117 4.117 3 C -0.058 4.058 4 C -0.113 4.113 5 C -0.159 4.159 6 C -0.110 4.110 7 C -0.140 4.140 8 C 0.155 3.845 9 N -1.124 6.124 10 S 2.591 3.409 11 O -0.970 6.970 12 O -0.965 6.965 13 C -0.591 4.591 14 C 0.028 3.972 15 C -0.521 4.521 16 H 0.061 0.939 17 C 0.058 3.942 18 N -0.891 5.891 19 Si 0.900 3.100 20 H -0.275 1.275 21 H -0.285 1.285 22 H -0.275 1.275 23 C -0.127 4.127 24 C -0.111 4.111 25 H 0.048 0.952 26 H 0.056 0.944 27 H 0.055 0.945 28 H 0.069 0.931 29 H 0.058 0.942 30 H 0.059 0.941 31 H 0.062 0.938 32 H 0.058 0.942 33 H 0.049 0.951 34 H 0.059 0.941 35 H 0.063 0.937 36 H 0.070 0.930 37 H 0.080 0.920 38 H 0.067 0.933 39 H 0.083 0.917 40 H 0.411 0.589 41 H 0.117 0.883 42 H 0.120 0.880 43 H 0.033 0.967 44 H 0.033 0.967 45 H 0.266 0.734 46 H 0.070 0.930 47 H 0.071 0.929 48 H 0.069 0.931 49 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.677 -8.128 -15.889 24.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.155 4.155 3 C -0.058 4.058 4 C -0.150 4.150 5 C -0.216 4.216 6 C -0.148 4.148 7 C -0.179 4.179 8 C 0.048 3.952 9 N -0.879 5.879 10 S 2.689 3.311 11 O -0.961 6.961 12 O -0.955 6.955 13 C -0.724 4.724 14 C -0.010 4.010 15 C -0.560 4.560 16 H 0.079 0.921 17 C -0.145 4.145 18 N -0.529 5.529 19 Si 0.727 3.273 20 H -0.201 1.201 21 H -0.211 1.211 22 H -0.201 1.201 23 C -0.166 4.166 24 C -0.149 4.149 25 H 0.067 0.933 26 H 0.075 0.925 27 H 0.074 0.926 28 H 0.088 0.912 29 H 0.077 0.923 30 H 0.078 0.922 31 H 0.081 0.919 32 H 0.077 0.923 33 H 0.068 0.932 34 H 0.078 0.922 35 H 0.082 0.918 36 H 0.088 0.912 37 H 0.099 0.901 38 H 0.086 0.914 39 H 0.101 0.899 40 H 0.244 0.756 41 H 0.135 0.865 42 H 0.138 0.862 43 H 0.051 0.949 44 H 0.052 0.948 45 H 0.075 0.925 46 H 0.089 0.911 47 H 0.089 0.911 48 H 0.087 0.913 49 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -15.577 -8.473 -15.862 23.791 hybrid contribution -0.837 1.105 0.644 1.528 sum -16.414 -7.369 -15.218 23.565 Atomic orbital electron populations 1.21885 0.96225 1.01222 1.01955 1.21678 0.95593 0.96036 1.02161 1.20612 0.95322 0.95016 0.94889 1.21601 1.00101 0.95942 0.97367 1.21920 1.01277 0.96698 1.01747 1.21647 0.94028 1.01296 0.97791 1.22130 1.02263 0.99800 0.93696 1.20734 0.94198 0.95582 0.84687 1.55904 1.46421 1.43903 1.41705 1.05572 0.73351 0.77987 0.74200 1.93547 1.84122 1.61490 1.56897 1.93540 1.60490 1.87567 1.53887 1.30458 1.11256 1.19398 1.11287 1.18948 0.88751 0.97533 0.95816 1.20969 0.97980 1.00281 1.36816 0.92117 1.25066 0.94957 0.98545 0.95897 1.69940 1.03138 1.38089 1.41685 0.86532 0.77846 0.83727 0.79179 1.20085 1.21073 1.20071 1.21901 0.94314 1.01740 0.98680 1.21666 1.00529 0.99464 0.93195 0.93252 0.92462 0.92624 0.91218 0.92285 0.92229 0.91905 0.92288 0.93207 0.92230 0.91787 0.91157 0.90126 0.91420 0.89913 0.75642 0.86457 0.86152 0.94889 0.94834 0.92466 0.91139 0.91056 0.91262 0.91388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.02 9.21 37.16 0.34 -0.68 16 2 C -0.12 -0.86 4.29 -26.73 -0.11 -0.98 16 3 C -0.06 -0.45 0.32 -154.51 -0.05 -0.50 16 4 C -0.11 -0.80 4.43 -26.73 -0.12 -0.92 16 5 C -0.16 -1.19 9.11 37.16 0.34 -0.86 16 6 C -0.11 -1.01 4.25 -26.73 -0.11 -1.12 16 7 C -0.14 -1.54 5.25 -26.73 -0.14 -1.68 16 8 C 0.16 1.75 2.56 -67.93 -0.17 1.58 16 9 N -1.12 -14.34 5.36 -4.89 -0.03 -14.36 16 10 S 2.59 46.24 5.38 -107.50 -0.58 45.67 16 11 O -0.97 -20.32 18.08 -57.54 -1.04 -21.36 16 12 O -0.96 -19.81 17.11 -57.54 -0.98 -20.79 16 13 C -0.59 -11.27 5.90 37.16 0.22 -11.05 16 14 C 0.03 0.73 4.98 -27.89 -0.14 0.59 16 15 C -0.52 -14.42 9.11 -34.44 -0.31 -14.73 16 16 H 0.06 1.58 7.74 -52.48 -0.41 1.18 16 17 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 18 N -0.89 -26.56 13.29 55.43 0.74 -25.82 16 19 Si 0.90 21.20 29.54 -169.99 -5.02 16.18 16 20 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 21 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 22 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 23 C -0.13 -1.13 5.18 -26.73 -0.14 -1.27 16 24 C -0.11 -0.89 4.18 -26.73 -0.11 -1.00 16 25 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 26 H 0.06 0.38 6.54 -51.93 -0.34 0.04 16 27 H 0.05 0.35 6.43 -51.94 -0.33 0.01 16 28 H 0.07 0.54 4.81 -51.93 -0.25 0.30 16 29 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.06 0.42 6.64 -51.93 -0.34 0.08 16 32 H 0.06 0.46 6.69 -51.93 -0.35 0.12 16 33 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 34 H 0.06 0.46 6.31 -51.93 -0.33 0.13 16 35 H 0.06 0.56 8.14 -51.92 -0.42 0.14 16 36 H 0.07 0.67 6.48 -51.93 -0.34 0.34 16 37 H 0.08 1.08 7.42 -51.93 -0.39 0.69 16 38 H 0.07 0.68 6.47 -51.93 -0.34 0.35 16 39 H 0.08 0.97 7.15 -51.93 -0.37 0.60 16 40 H 0.41 4.38 8.80 -34.47 -0.30 4.08 16 41 H 0.12 1.99 7.44 -51.92 -0.39 1.61 16 42 H 0.12 2.07 8.14 -51.92 -0.42 1.65 16 43 H 0.03 0.89 8.14 -51.93 -0.42 0.47 16 44 H 0.03 0.90 8.14 -51.93 -0.42 0.48 16 45 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 46 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 47 H 0.07 0.58 6.39 -51.93 -0.33 0.24 16 48 H 0.07 0.58 6.44 -51.93 -0.33 0.24 16 49 H 0.07 0.49 6.50 -51.93 -0.34 0.15 16 LS Contribution 374.15 15.07 5.64 5.64 Total: -1.00 -33.77 374.15 -10.30 -44.06 By element: Atomic # 1 Polarization: 10.29 SS G_CDS: -8.41 Total: 1.88 kcal Atomic # 6 Polarization: -30.47 SS G_CDS: -0.61 Total: -31.08 kcal Atomic # 7 Polarization: -40.90 SS G_CDS: 0.71 Total: -40.19 kcal Atomic # 8 Polarization: -40.13 SS G_CDS: -2.02 Total: -42.16 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Atomic # 16 Polarization: 46.24 SS G_CDS: -0.58 Total: 45.67 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -33.77 -10.30 -44.06 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353824568.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.671 kcal (2) G-P(sol) polarization free energy of solvation -33.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.063 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds