Wall clock time and date at job start Tue Mar 31 2020 12:03:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53004 * 109.47051 * 2 1 4 4 C 1.53001 * 109.46772 * 301.91807 * 3 2 1 5 5 C 1.53005 * 109.46676 * 184.84572 * 4 3 2 6 6 C 1.52998 * 109.47116 * 181.91578 * 3 2 1 7 7 C 1.52998 * 109.47008 * 299.99995 * 6 3 2 8 8 C 1.53002 * 109.47035 * 299.99889 * 7 6 3 9 9 N 1.46504 * 109.46730 * 180.02562 * 8 7 6 10 10 S 1.65594 * 120.00213 * 95.00364 * 9 8 7 11 11 O 1.42098 * 104.27872 * 181.06809 * 10 9 8 12 12 O 1.42103 * 104.27742 * 308.92201 * 10 9 8 13 13 C 1.81401 * 104.45302 * 64.99209 * 10 9 8 14 14 C 1.52995 * 109.47391 * 180.02562 * 13 10 9 15 15 C 1.50695 * 109.47291 * 180.02562 * 14 13 10 16 16 H 1.08003 * 119.99823 * 359.97438 * 15 14 13 17 17 C 1.37885 * 120.00173 * 180.02562 * 15 14 13 18 18 N 1.31506 * 119.99861 * 359.97438 * 17 15 14 19 19 Si 1.86793 * 119.99832 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.47528 * 60.00235 * 19 17 15 21 21 H 1.48499 * 109.47093 * 179.97438 * 19 17 15 22 22 H 1.48502 * 109.47262 * 299.99872 * 19 17 15 23 23 C 1.52998 * 109.47132 * 60.00187 * 8 7 6 24 24 C 1.52998 * 109.47008 * 299.99829 * 23 8 7 25 25 H 1.08997 * 109.47162 * 178.66166 * 1 2 3 26 26 H 1.09007 * 109.47025 * 298.66096 * 1 2 3 27 27 H 1.08989 * 109.47386 * 58.65814 * 1 2 3 28 28 H 1.09003 * 109.47189 * 119.99825 * 2 1 3 29 29 H 1.09002 * 109.47058 * 239.99716 * 2 1 3 30 30 H 1.09002 * 109.47253 * 304.83784 * 4 3 2 31 31 H 1.08995 * 109.47437 * 64.84256 * 4 3 2 32 32 H 1.08998 * 109.47049 * 65.67598 * 5 4 3 33 33 H 1.08997 * 109.46735 * 185.67136 * 5 4 3 34 34 H 1.08997 * 109.47072 * 305.66708 * 5 4 3 35 35 H 1.09008 * 109.47197 * 59.99809 * 6 3 2 36 36 H 1.08994 * 109.47279 * 179.97438 * 6 3 2 37 37 H 1.09002 * 109.46823 * 180.02562 * 7 6 3 38 38 H 1.09004 * 109.47587 * 60.00098 * 7 6 3 39 39 H 1.09004 * 109.47033 * 299.99953 * 8 7 6 40 40 H 0.97004 * 119.99825 * 274.99685 * 9 8 7 41 41 H 1.09000 * 109.47176 * 300.00580 * 13 10 9 42 42 H 1.09006 * 109.46665 * 60.00455 * 13 10 9 43 43 H 1.09005 * 109.46868 * 300.00358 * 14 13 10 44 44 H 1.08997 * 109.47430 * 59.99804 * 14 13 10 45 45 H 0.96999 * 120.00552 * 179.97438 * 18 17 15 46 46 H 1.08997 * 109.46793 * 179.97438 * 23 8 7 47 47 H 1.09004 * 109.46867 * 60.00172 * 23 8 7 48 48 H 1.08994 * 109.47103 * 300.00111 * 24 23 8 49 49 H 1.09002 * 109.46823 * 179.97438 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.4909 2.1775 -1.2244 5 6 2.0960 3.5813 -1.2903 6 6 3.5693 1.4428 -0.0482 7 6 4.1182 0.7078 1.1762 8 6 3.6480 1.4150 2.4488 9 7 4.1742 0.7115 3.6212 10 16 5.5806 1.2218 4.3309 11 8 5.7875 0.3058 5.3973 12 8 6.5034 1.3131 3.2541 13 6 5.1897 2.8717 4.9757 14 6 6.4253 3.4568 5.6626 15 6 6.1003 4.8271 6.1988 16 1 5.1115 5.2397 6.0628 17 6 7.0657 5.5547 6.8621 18 7 8.2698 5.0525 7.0273 19 14 6.6630 7.2535 7.5261 20 1 5.5533 7.1513 8.5076 21 1 7.8622 7.8214 8.1929 22 1 6.2533 8.1384 6.4061 23 6 2.1187 1.4148 2.4971 24 6 1.5698 2.1498 1.2726 25 1 -0.3633 -1.0273 -0.0240 26 1 -0.3633 0.4929 0.9018 27 1 -0.3633 0.5345 -0.8776 28 1 1.8934 -0.5138 0.8900 29 1 1.8934 -0.5139 -0.8900 30 1 1.7535 1.6261 -2.1273 31 1 0.4063 2.2526 -1.1470 32 1 3.1687 3.5066 -1.4688 33 1 1.6306 4.1397 -2.1025 34 1 1.9196 4.0976 -0.3467 35 1 3.9043 0.9390 -0.9549 36 1 3.9326 2.4704 -0.0487 37 1 5.2077 0.7084 1.1420 38 1 3.7549 -0.3199 1.1763 39 1 4.0113 2.4427 2.4488 40 1 3.6986 -0.0532 3.9819 41 1 4.8897 3.5214 4.1535 42 1 4.3747 2.7967 5.6956 43 1 6.7257 2.8071 6.4848 44 1 7.2401 3.5318 4.9426 45 1 8.9491 5.5644 7.4936 46 1 1.7838 1.9182 3.4039 47 1 1.7554 0.3870 2.4971 48 1 1.9331 3.1774 1.2726 49 1 0.4803 2.1492 1.3068 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000353824568.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:03:14 Heat of formation + Delta-G solvation = -141.176161 kcal Electronic energy + Delta-G solvation = -26138.021052 eV Core-core repulsion = 22610.423426 eV Total energy + Delta-G solvation = -3527.597627 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.181 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.04139 -38.15195 -37.05744 -36.82216 -35.89795 -33.13294 -32.82190 -32.67161 -31.59370 -28.17132 -27.59684 -24.91382 -24.00458 -23.61945 -23.24456 -21.95533 -20.33149 -19.24323 -18.76577 -18.02167 -17.52271 -16.99817 -16.52957 -16.34786 -15.95102 -15.78228 -15.42957 -15.17604 -15.13666 -14.51188 -14.45180 -14.19245 -13.73564 -13.64340 -13.32050 -13.20912 -13.13525 -13.08576 -12.92624 -12.90470 -12.78829 -12.65720 -12.60060 -12.35199 -12.25231 -12.20496 -12.11735 -11.94083 -11.77929 -11.67040 -11.31487 -11.17641 -10.89455 -10.77005 -10.75252 -10.63982 -10.21101 -8.25957 -6.40254 -0.65988 1.40763 1.44371 1.52514 1.86865 2.38143 2.81572 3.07349 3.28588 3.72605 3.75950 3.82202 3.99349 4.03611 4.10495 4.20771 4.32821 4.42013 4.47070 4.47601 4.55691 4.61855 4.68185 4.73057 4.75389 4.85440 4.89137 4.92346 5.01308 5.09145 5.20301 5.21474 5.26612 5.27303 5.27661 5.32169 5.35823 5.38996 5.41114 5.43808 5.50165 5.65129 5.67953 5.68726 5.78038 6.05973 6.19340 6.73259 7.29939 8.86231 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.016217 B = 0.003376 C = 0.003035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1726.132711 B = 8292.964398 C = 9224.227360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.117 4.117 3 C -0.054 4.054 4 C -0.109 4.109 5 C -0.161 4.161 6 C -0.108 4.108 7 C -0.140 4.140 8 C 0.145 3.855 9 N -1.103 6.103 10 S 2.617 3.383 11 O -1.003 7.003 12 O -0.994 6.994 13 C -0.589 4.589 14 C 0.021 3.979 15 C -0.540 4.540 16 H 0.076 0.924 17 C -0.004 4.004 18 N -0.935 5.935 19 Si 0.974 3.026 20 H -0.263 1.263 21 H -0.285 1.285 22 H -0.262 1.262 23 C -0.122 4.122 24 C -0.110 4.110 25 H 0.051 0.949 26 H 0.059 0.941 27 H 0.059 0.941 28 H 0.066 0.934 29 H 0.058 0.942 30 H 0.061 0.939 31 H 0.072 0.928 32 H 0.050 0.950 33 H 0.054 0.946 34 H 0.057 0.943 35 H 0.067 0.933 36 H 0.063 0.937 37 H 0.051 0.949 38 H 0.078 0.922 39 H 0.079 0.921 40 H 0.424 0.576 41 H 0.140 0.860 42 H 0.143 0.857 43 H 0.005 0.995 44 H 0.006 0.994 45 H 0.267 0.733 46 H 0.077 0.923 47 H 0.083 0.917 48 H 0.066 0.934 49 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.670 -7.509 -16.578 26.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.154 4.154 3 C -0.054 4.054 4 C -0.146 4.146 5 C -0.218 4.218 6 C -0.146 4.146 7 C -0.179 4.179 8 C 0.039 3.961 9 N -0.863 5.863 10 S 2.713 3.287 11 O -0.993 6.993 12 O -0.984 6.984 13 C -0.721 4.721 14 C -0.018 4.018 15 C -0.579 4.579 16 H 0.095 0.905 17 C -0.203 4.203 18 N -0.574 5.574 19 Si 0.797 3.203 20 H -0.187 1.187 21 H -0.210 1.210 22 H -0.187 1.187 23 C -0.161 4.161 24 C -0.148 4.148 25 H 0.070 0.930 26 H 0.078 0.922 27 H 0.078 0.922 28 H 0.084 0.916 29 H 0.076 0.924 30 H 0.079 0.921 31 H 0.090 0.910 32 H 0.069 0.931 33 H 0.073 0.927 34 H 0.076 0.924 35 H 0.086 0.914 36 H 0.082 0.918 37 H 0.070 0.930 38 H 0.096 0.904 39 H 0.097 0.903 40 H 0.261 0.739 41 H 0.158 0.842 42 H 0.161 0.839 43 H 0.023 0.977 44 H 0.024 0.976 45 H 0.076 0.924 46 H 0.095 0.905 47 H 0.102 0.898 48 H 0.084 0.916 49 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -18.586 -7.860 -16.550 26.098 hybrid contribution 0.086 0.846 0.784 1.157 sum -18.500 -7.014 -15.767 25.299 Atomic orbital electron populations 1.21866 0.95361 1.01542 1.02286 1.21663 0.96301 0.95449 1.01973 1.20569 0.93955 0.95572 0.95278 1.21572 1.00545 0.95474 0.97025 1.21929 1.00880 0.97119 1.01853 1.21640 0.95344 1.00643 0.96973 1.22109 1.00522 1.00796 0.94470 1.21028 0.96156 0.95155 0.83786 1.55399 1.45067 1.44176 1.41659 1.04527 0.73886 0.76977 0.73267 1.93496 1.85198 1.62223 1.58362 1.93505 1.62495 1.87725 1.54688 1.30346 1.08873 1.20649 1.12198 1.18806 0.90921 0.97255 0.94817 1.21495 0.98705 1.01145 1.36558 0.90547 1.26131 0.94693 1.03225 0.96211 1.70094 1.04437 1.40065 1.42834 0.85362 0.77830 0.78180 0.78879 1.18734 1.21013 1.18664 1.21892 0.91862 1.02859 0.99502 1.21690 1.01368 0.99114 0.92647 0.93011 0.92182 0.92205 0.91585 0.92364 0.92070 0.90962 0.93085 0.92655 0.92440 0.91446 0.91788 0.93023 0.90356 0.90341 0.73924 0.84200 0.83902 0.97681 0.97559 0.92383 0.90471 0.89805 0.91585 0.89889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.57 9.21 71.98 0.66 -0.91 16 2 C -0.12 -1.43 4.29 30.60 0.13 -1.30 16 3 C -0.05 -0.72 0.32 -52.18 -0.02 -0.73 16 4 C -0.11 -1.31 4.43 30.60 0.14 -1.17 16 5 C -0.16 -2.15 9.11 71.98 0.66 -1.50 16 6 C -0.11 -1.87 4.25 30.59 0.13 -1.74 16 7 C -0.14 -2.97 5.25 30.59 0.16 -2.81 16 8 C 0.15 3.06 2.56 44.99 0.11 3.18 16 9 N -1.10 -26.72 5.36 -169.38 -0.91 -27.63 16 10 S 2.62 93.90 5.38 -56.49 -0.30 93.60 16 11 O -1.00 -42.50 18.08 -127.65 -2.31 -44.81 16 12 O -0.99 -41.84 17.11 -127.65 -2.18 -44.02 16 13 C -0.59 -22.26 5.90 71.98 0.42 -21.83 16 14 C 0.02 1.10 4.98 29.84 0.15 1.25 16 15 C -0.54 -30.00 9.11 25.60 0.23 -29.77 16 16 H 0.08 3.89 7.74 -2.91 -0.02 3.86 16 17 C 0.00 -0.24 5.46 84.66 0.46 0.22 16 18 N -0.93 -57.23 13.29 21.45 0.28 -56.95 16 19 Si 0.97 43.23 29.54 68.60 2.03 45.25 16 20 H -0.26 -11.05 7.11 99.48 0.71 -10.34 16 21 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 22 H -0.26 -10.99 7.11 99.48 0.71 -10.29 16 23 C -0.12 -1.83 5.18 30.59 0.16 -1.67 16 24 C -0.11 -1.47 4.18 30.59 0.13 -1.34 16 25 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 26 H 0.06 0.59 6.54 -2.38 -0.02 0.57 16 27 H 0.06 0.57 6.43 -2.39 -0.02 0.55 16 28 H 0.07 0.86 4.81 -2.39 -0.01 0.85 16 29 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 30 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.07 0.76 6.64 -2.39 -0.02 0.74 16 32 H 0.05 0.75 6.69 -2.39 -0.02 0.74 16 33 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 34 H 0.06 0.79 6.31 -2.39 -0.02 0.77 16 35 H 0.07 1.11 8.14 -2.38 -0.02 1.09 16 36 H 0.06 1.19 6.48 -2.39 -0.02 1.17 16 37 H 0.05 1.40 7.42 -2.39 -0.02 1.38 16 38 H 0.08 1.47 6.47 -2.38 -0.02 1.45 16 39 H 0.08 1.74 7.15 -2.38 -0.02 1.72 16 40 H 0.42 8.24 8.80 -96.74 -0.85 7.39 16 41 H 0.14 4.60 7.44 -2.39 -0.02 4.58 16 42 H 0.14 4.71 8.14 -2.39 -0.02 4.69 16 43 H 0.00 0.28 8.14 -2.38 -0.02 0.26 16 44 H 0.01 0.35 8.14 -2.39 -0.02 0.33 16 45 H 0.27 15.33 8.31 -92.71 -0.77 14.56 16 46 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 47 H 0.08 1.07 6.39 -2.38 -0.02 1.06 16 48 H 0.07 0.95 6.44 -2.39 -0.02 0.93 16 49 H 0.08 0.91 6.50 -2.39 -0.02 0.89 16 Total: -1.00 -74.05 374.15 0.22 -73.83 By element: Atomic # 1 Polarization: 20.76 SS G_CDS: 0.08 Total: 20.84 kcal Atomic # 6 Polarization: -63.65 SS G_CDS: 3.53 Total: -60.12 kcal Atomic # 7 Polarization: -83.95 SS G_CDS: -0.62 Total: -84.57 kcal Atomic # 8 Polarization: -84.33 SS G_CDS: -4.49 Total: -88.83 kcal Atomic # 14 Polarization: 43.23 SS G_CDS: 2.03 Total: 45.25 kcal Atomic # 16 Polarization: 93.90 SS G_CDS: -0.30 Total: 93.60 kcal Total: -74.05 0.22 -73.83 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353824568.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.349 kcal (2) G-P(sol) polarization free energy of solvation -74.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.828 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds