Wall clock time and date at job start Tue Mar 31 2020 12:40:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31006 * 1 3 3 C 1.50691 * 120.00300 * 2 1 4 4 C 1.50697 * 109.47262 * 125.00220 * 3 2 1 5 5 C 1.38171 * 120.02612 * 264.72134 * 4 3 2 6 6 C 1.38247 * 120.05139 * 179.77052 * 5 4 3 7 7 C 1.38289 * 120.11443 * 0.50761 * 6 5 4 8 8 C 1.38126 * 120.05228 * 359.74641 * 7 6 5 9 9 C 1.38706 * 120.02931 * 85.00004 * 4 3 2 10 10 O 1.35905 * 120.05553 * 359.97438 * 9 4 3 11 11 C 1.42901 * 116.99904 * 180.02562 * 10 9 4 12 12 C 1.53005 * 109.47092 * 179.97438 * 11 10 9 13 13 H 1.09002 * 109.46951 * 305.00378 * 12 11 10 14 14 O 1.42906 * 109.46712 * 64.99897 * 12 11 10 15 15 C 1.52998 * 109.47186 * 185.00239 * 12 11 10 16 16 N 1.46496 * 109.47189 * 180.02562 * 15 12 11 17 17 C 1.36939 * 120.00339 * 89.99483 * 16 15 12 18 18 H 1.08002 * 120.00477 * 217.92450 * 17 16 15 19 19 C 1.38817 * 119.99781 * 37.92599 * 17 16 15 20 20 N 1.31617 * 120.00093 * 20.54423 * 19 17 16 21 21 Si 1.86804 * 119.99810 * 200.55054 * 19 17 16 22 22 H 1.48500 * 109.47187 * 89.99938 * 21 19 17 23 23 H 1.48498 * 109.46628 * 209.99889 * 21 19 17 24 24 H 1.48500 * 109.47018 * 329.99291 * 21 19 17 25 25 C 1.46501 * 120.00126 * 269.99805 * 16 15 12 26 26 C 1.52997 * 117.50232 * 194.21213 * 25 16 15 27 27 C 1.53000 * 60.00206 * 252.51232 * 26 25 16 28 28 H 1.08004 * 119.99255 * 359.97438 * 1 2 3 29 29 H 1.07996 * 120.00377 * 180.02562 * 1 2 3 30 30 H 1.07996 * 119.99236 * 179.72670 * 2 1 3 31 31 H 1.09008 * 109.46897 * 245.00249 * 3 2 1 32 32 H 1.08998 * 109.47350 * 4.99661 * 3 2 1 33 33 H 1.07990 * 119.97245 * 0.02562 * 5 4 3 34 34 H 1.07994 * 119.94265 * 180.25738 * 6 5 4 35 35 H 1.07991 * 119.97217 * 179.77058 * 7 6 5 36 36 H 1.08005 * 120.02281 * 179.97438 * 8 7 6 37 37 H 1.08997 * 109.47174 * 300.00071 * 11 10 9 38 38 H 1.09004 * 109.47007 * 60.00287 * 11 10 9 39 39 H 0.96698 * 113.99478 * 60.00144 * 14 12 11 40 40 H 1.09007 * 109.46820 * 299.99877 * 15 12 11 41 41 H 1.08998 * 109.47207 * 60.00011 * 15 12 11 42 42 H 0.96997 * 120.00380 * 174.94649 * 20 19 17 43 43 H 1.09000 * 115.54471 * 339.92678 * 25 16 15 44 44 H 1.08995 * 117.49490 * 0.02562 * 26 25 16 45 45 H 1.08997 * 117.49632 * 145.01771 * 26 25 16 46 46 H 1.09004 * 117.49732 * 252.51297 * 27 26 25 47 47 H 1.08998 * 117.51989 * 107.47953 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 6 3.0205 1.3325 1.1638 5 6 2.6483 1.9334 2.3510 6 6 3.5240 1.9548 3.4205 7 6 4.7781 1.3844 3.3019 8 6 5.1570 0.7871 2.1155 9 6 4.2779 0.7597 1.0422 10 8 4.6484 0.1726 -0.1261 11 6 5.9577 -0.3974 -0.1792 12 6 6.1927 -1.0077 -1.5624 13 1 5.3988 -1.7208 -1.7845 14 8 6.1911 0.0285 -2.5466 15 6 7.5434 -1.7261 -1.5802 16 7 7.7686 -2.3099 -2.9048 17 6 8.4019 -1.5809 -3.8757 18 1 8.0786 -1.6544 -4.9036 19 6 9.4597 -0.7475 -3.5388 20 7 10.1169 -0.9398 -2.4148 21 14 9.9502 0.6472 -4.6807 22 1 9.1939 1.8728 -4.3185 23 1 11.4063 0.9067 -4.5479 24 1 9.6404 0.2707 -6.0834 25 6 7.3161 -3.6736 -3.1909 26 6 7.8599 -4.3486 -4.4516 27 6 6.4055 -3.8760 -4.4036 28 1 -0.5399 0.9354 0.0004 29 1 -0.5400 -0.9352 0.0004 30 1 1.8499 -0.9353 0.0045 31 1 2.6214 1.4024 -0.9315 32 1 1.3587 2.1316 0.0895 33 1 1.6709 2.3831 2.4448 34 1 3.2296 2.4213 4.3489 35 1 5.4617 1.4057 4.1376 36 1 6.1368 0.3421 2.0232 37 1 6.6998 0.3791 0.0066 38 1 6.0469 -1.1743 0.5802 39 1 6.8734 0.7002 -2.4115 40 1 8.3372 -1.0128 -1.3582 41 1 7.5445 -2.5163 -0.8295 42 1 10.9009 -0.4052 -2.2138 43 1 7.1399 -4.3031 -2.3186 44 1 8.5546 -3.7781 -5.0680 45 1 8.0418 -5.4224 -4.4090 46 1 5.6305 -4.6390 -4.3294 47 1 6.1428 -2.9945 -4.9884 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000355942758.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:40:04 Heat of formation + Delta-G solvation = 1.771699 kcal Electronic energy + Delta-G solvation = -26733.641662 eV Core-core repulsion = 23076.798769 eV Total energy + Delta-G solvation = -3656.842893 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.21411 -37.97531 -37.07188 -35.74264 -35.15507 -33.21162 -31.37389 -30.99031 -30.11669 -28.97913 -26.36073 -25.68431 -23.83800 -22.09075 -21.77263 -21.35434 -20.72260 -19.87986 -19.74782 -17.95008 -16.75496 -16.11301 -16.04934 -15.82651 -15.41489 -14.95320 -14.75278 -14.51461 -14.40342 -14.16994 -13.79453 -13.62008 -13.34343 -13.17436 -12.65732 -12.51401 -12.27379 -11.91703 -11.84994 -11.52752 -11.19251 -11.17304 -10.91154 -10.90959 -10.85809 -10.69931 -10.58500 -10.52901 -10.04782 -10.01174 -9.69698 -9.35025 -9.33128 -9.16517 -8.86439 -8.49897 -8.04991 -6.51416 -5.88345 -3.42527 1.28812 1.46543 2.30545 3.29855 3.37142 3.40069 3.43616 3.75134 4.39093 4.75404 4.78350 4.92196 4.95820 5.04133 5.07854 5.16308 5.17803 5.27212 5.30141 5.31128 5.43492 5.51434 5.61483 5.62656 5.77746 5.82895 5.88631 5.94094 6.04375 6.06563 6.15721 6.25856 6.31200 6.37665 6.42077 6.49867 6.50800 6.60379 6.61150 6.70448 6.77306 6.83874 7.00027 7.17896 7.37818 7.58188 7.79055 8.42691 8.51706 9.08987 9.70247 10.27121 11.13135 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.013509 B = 0.003531 C = 0.003179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2072.227403 B = 7928.023210 C = 8804.494690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.130 4.130 3 C -0.047 4.047 4 C -0.115 4.115 5 C -0.080 4.080 6 C -0.165 4.165 7 C -0.084 4.084 8 C -0.210 4.210 9 C 0.140 3.860 10 O -0.299 6.299 11 C 0.027 3.973 12 C 0.094 3.906 13 H 0.089 0.911 14 O -0.538 6.538 15 C 0.123 3.877 16 N -0.539 5.539 17 C -0.238 4.238 18 H 0.061 0.939 19 C 0.011 3.989 20 N -0.896 5.896 21 Si 0.900 3.100 22 H -0.284 1.284 23 H -0.293 1.293 24 H -0.278 1.278 25 C 0.125 3.875 26 C -0.195 4.195 27 C -0.225 4.225 28 H 0.093 0.907 29 H 0.095 0.905 30 H 0.109 0.891 31 H 0.090 0.910 32 H 0.071 0.929 33 H 0.124 0.876 34 H 0.119 0.881 35 H 0.121 0.879 36 H 0.129 0.871 37 H 0.062 0.938 38 H 0.063 0.937 39 H 0.366 0.634 40 H 0.104 0.896 41 H 0.036 0.964 42 H 0.256 0.744 43 H 0.087 0.913 44 H 0.098 0.902 45 H 0.073 0.927 46 H 0.071 0.929 47 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.618 3.095 10.365 16.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C -0.148 4.148 3 C -0.084 4.084 4 C -0.116 4.116 5 C -0.098 4.098 6 C -0.184 4.184 7 C -0.102 4.102 8 C -0.229 4.229 9 C 0.094 3.906 10 O -0.212 6.212 11 C -0.049 4.049 12 C 0.031 3.969 13 H 0.107 0.893 14 O -0.341 6.341 15 C -0.005 4.005 16 N -0.254 5.254 17 C -0.368 4.368 18 H 0.079 0.921 19 C -0.188 4.188 20 N -0.539 5.539 21 Si 0.729 3.271 22 H -0.211 1.211 23 H -0.219 1.219 24 H -0.203 1.203 25 C 0.015 3.985 26 C -0.234 4.234 27 C -0.266 4.266 28 H 0.112 0.888 29 H 0.113 0.887 30 H 0.127 0.873 31 H 0.108 0.892 32 H 0.090 0.910 33 H 0.142 0.858 34 H 0.137 0.863 35 H 0.139 0.861 36 H 0.147 0.853 37 H 0.081 0.919 38 H 0.082 0.918 39 H 0.212 0.788 40 H 0.121 0.879 41 H 0.054 0.946 42 H 0.066 0.934 43 H 0.105 0.895 44 H 0.117 0.883 45 H 0.091 0.909 46 H 0.090 0.910 47 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -13.065 2.864 10.042 16.726 hybrid contribution 1.040 0.891 -0.095 1.373 sum -12.025 3.755 9.947 16.051 Atomic orbital electron populations 1.23759 0.95765 1.01532 1.03369 1.22890 0.95635 0.98462 0.97802 1.19588 0.96383 0.95487 0.96960 1.19106 0.93137 1.02724 0.96650 1.20829 0.99205 0.97982 0.91818 1.20958 0.94730 1.03629 0.99042 1.20919 0.96179 0.96301 0.96789 1.21333 1.00783 1.06548 0.94231 1.18991 0.93035 0.92869 0.85724 1.86213 1.34240 1.69476 1.31223 1.23899 0.81914 0.97425 1.01671 1.22872 1.01148 0.89611 0.83264 0.89342 1.86548 1.57885 1.37929 1.51763 1.21509 0.94264 0.97790 0.86917 1.43136 1.63800 1.07916 1.10532 1.18896 1.09343 1.18623 0.89902 0.92110 1.25155 0.95670 1.00762 0.97240 1.69881 1.17995 1.40837 1.25230 0.86339 0.77101 0.82747 0.80883 1.21054 1.21929 1.20275 1.21133 0.99563 0.87987 0.89792 1.23063 0.96720 0.98568 1.05045 1.23359 0.92685 1.02458 1.08104 0.88825 0.88671 0.87318 0.89175 0.90996 0.85827 0.86257 0.86082 0.85319 0.91947 0.91840 0.78787 0.87901 0.94589 0.93360 0.89530 0.88320 0.90852 0.91011 0.89511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -2.13 14.32 29.01 0.42 -1.71 16 2 C -0.13 -1.56 9.50 -36.03 -0.34 -1.91 16 3 C -0.05 -0.58 5.51 -29.04 -0.16 -0.74 16 4 C -0.12 -1.52 5.13 -104.48 -0.54 -2.06 16 5 C -0.08 -0.91 9.68 -39.60 -0.38 -1.29 16 6 C -0.17 -1.77 10.04 -39.56 -0.40 -2.17 16 7 C -0.08 -0.96 10.04 -39.60 -0.40 -1.36 16 8 C -0.21 -2.78 9.04 -39.43 -0.36 -3.14 16 9 C 0.14 2.05 6.66 -39.22 -0.26 1.79 16 10 O -0.30 -4.86 9.24 -24.29 -0.22 -5.09 16 11 C 0.03 0.43 4.37 37.16 0.16 0.59 16 12 C 0.09 1.76 3.52 -26.73 -0.09 1.66 16 13 H 0.09 1.73 8.14 -51.93 -0.42 1.31 16 14 O -0.54 -11.26 12.58 -40.08 -0.50 -11.77 16 15 C 0.12 2.59 5.05 -4.05 -0.02 2.57 16 16 N -0.54 -12.64 2.73 -165.66 -0.45 -13.09 16 17 C -0.24 -6.13 7.39 -15.06 -0.11 -6.24 16 18 H 0.06 1.64 7.21 -52.49 -0.38 1.26 16 19 C 0.01 0.28 4.97 -17.43 -0.09 0.20 16 20 N -0.90 -24.00 11.44 55.49 0.63 -23.36 16 21 Si 0.90 20.83 29.60 -169.99 -5.03 15.80 16 22 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 23 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 24 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 25 C 0.12 2.61 6.62 -67.93 -0.45 2.16 16 26 C -0.20 -3.89 9.81 -26.73 -0.26 -4.15 16 27 C -0.23 -4.36 10.08 -26.73 -0.27 -4.63 16 28 H 0.09 0.84 7.84 -52.48 -0.41 0.43 16 29 H 0.09 0.88 8.06 -52.49 -0.42 0.46 16 30 H 0.11 1.42 8.06 -52.49 -0.42 0.99 16 31 H 0.09 1.25 7.69 -51.92 -0.40 0.85 16 32 H 0.07 0.74 7.70 -51.93 -0.40 0.34 16 33 H 0.12 1.11 8.06 -52.49 -0.42 0.69 16 34 H 0.12 0.99 8.06 -52.49 -0.42 0.56 16 35 H 0.12 1.10 8.06 -52.49 -0.42 0.68 16 36 H 0.13 1.61 6.30 -52.48 -0.33 1.28 16 37 H 0.06 0.96 7.66 -51.93 -0.40 0.57 16 38 H 0.06 0.90 7.66 -51.93 -0.40 0.51 16 39 H 0.37 7.24 9.04 45.56 0.41 7.65 16 40 H 0.10 2.42 5.51 -51.93 -0.29 2.13 16 41 H 0.04 0.71 8.04 -51.93 -0.42 0.29 16 42 H 0.26 6.70 8.32 -40.82 -0.34 6.36 16 43 H 0.09 1.66 8.10 -51.93 -0.42 1.24 16 44 H 0.10 2.18 6.96 -51.93 -0.36 1.82 16 45 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 46 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 47 H 0.09 1.84 7.99 -51.93 -0.41 1.42 16 LS Contribution 389.38 15.07 5.87 5.87 Total: -1.00 -28.25 389.38 -9.98 -38.24 By element: Atomic # 1 Polarization: 20.55 SS G_CDS: -6.72 Total: 13.83 kcal Atomic # 6 Polarization: -16.87 SS G_CDS: -3.55 Total: -20.42 kcal Atomic # 7 Polarization: -36.64 SS G_CDS: 0.18 Total: -36.45 kcal Atomic # 8 Polarization: -16.13 SS G_CDS: -0.73 Total: -16.85 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.03 Total: 15.80 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -28.25 -9.98 -38.24 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355942758.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.008 kcal (2) G-P(sol) polarization free energy of solvation -28.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.236 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds