Wall clock time and date at job start Tue Mar 31 2020 12:40:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31006 * 1 3 3 C 1.50691 * 120.00300 * 2 1 4 4 C 1.50697 * 109.47262 * 125.00220 * 3 2 1 5 5 C 1.38171 * 120.02612 * 264.72134 * 4 3 2 6 6 C 1.38247 * 120.05139 * 179.77052 * 5 4 3 7 7 C 1.38289 * 120.11443 * 0.50761 * 6 5 4 8 8 C 1.38126 * 120.05228 * 359.74641 * 7 6 5 9 9 C 1.38706 * 120.02931 * 85.00004 * 4 3 2 10 10 O 1.35905 * 120.05553 * 359.97438 * 9 4 3 11 11 C 1.42901 * 116.99904 * 180.02562 * 10 9 4 12 12 C 1.53005 * 109.47092 * 179.97438 * 11 10 9 13 13 H 1.09002 * 109.46951 * 305.00378 * 12 11 10 14 14 O 1.42906 * 109.46712 * 64.99897 * 12 11 10 15 15 C 1.52998 * 109.47186 * 185.00239 * 12 11 10 16 16 N 1.46496 * 109.47189 * 180.02562 * 15 12 11 17 17 C 1.36939 * 120.00339 * 89.99483 * 16 15 12 18 18 H 1.08002 * 120.00477 * 217.92450 * 17 16 15 19 19 C 1.38817 * 119.99781 * 37.92599 * 17 16 15 20 20 N 1.31617 * 120.00093 * 20.54423 * 19 17 16 21 21 Si 1.86804 * 119.99810 * 200.55054 * 19 17 16 22 22 H 1.48500 * 109.47187 * 89.99938 * 21 19 17 23 23 H 1.48498 * 109.46628 * 209.99889 * 21 19 17 24 24 H 1.48500 * 109.47018 * 329.99291 * 21 19 17 25 25 C 1.46501 * 120.00126 * 269.99805 * 16 15 12 26 26 C 1.52997 * 117.50232 * 194.21213 * 25 16 15 27 27 C 1.53000 * 60.00206 * 252.51232 * 26 25 16 28 28 H 1.08004 * 119.99255 * 359.97438 * 1 2 3 29 29 H 1.07996 * 120.00377 * 180.02562 * 1 2 3 30 30 H 1.07996 * 119.99236 * 179.72670 * 2 1 3 31 31 H 1.09008 * 109.46897 * 245.00249 * 3 2 1 32 32 H 1.08998 * 109.47350 * 4.99661 * 3 2 1 33 33 H 1.07990 * 119.97245 * 0.02562 * 5 4 3 34 34 H 1.07994 * 119.94265 * 180.25738 * 6 5 4 35 35 H 1.07991 * 119.97217 * 179.77058 * 7 6 5 36 36 H 1.08005 * 120.02281 * 179.97438 * 8 7 6 37 37 H 1.08997 * 109.47174 * 300.00071 * 11 10 9 38 38 H 1.09004 * 109.47007 * 60.00287 * 11 10 9 39 39 H 0.96698 * 113.99478 * 60.00144 * 14 12 11 40 40 H 1.09007 * 109.46820 * 299.99877 * 15 12 11 41 41 H 1.08998 * 109.47207 * 60.00011 * 15 12 11 42 42 H 0.96997 * 120.00380 * 174.94649 * 20 19 17 43 43 H 1.09000 * 115.54471 * 339.92678 * 25 16 15 44 44 H 1.08995 * 117.49490 * 0.02562 * 26 25 16 45 45 H 1.08997 * 117.49632 * 145.01771 * 26 25 16 46 46 H 1.09004 * 117.49732 * 252.51297 * 27 26 25 47 47 H 1.08998 * 117.51989 * 107.47953 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 6 3.0205 1.3325 1.1638 5 6 2.6483 1.9334 2.3510 6 6 3.5240 1.9548 3.4205 7 6 4.7781 1.3844 3.3019 8 6 5.1570 0.7871 2.1155 9 6 4.2779 0.7597 1.0422 10 8 4.6484 0.1726 -0.1261 11 6 5.9577 -0.3974 -0.1792 12 6 6.1927 -1.0077 -1.5624 13 1 5.3988 -1.7208 -1.7845 14 8 6.1911 0.0285 -2.5466 15 6 7.5434 -1.7261 -1.5802 16 7 7.7686 -2.3099 -2.9048 17 6 8.4019 -1.5809 -3.8757 18 1 8.0786 -1.6544 -4.9036 19 6 9.4597 -0.7475 -3.5388 20 7 10.1169 -0.9398 -2.4148 21 14 9.9502 0.6472 -4.6807 22 1 9.1939 1.8728 -4.3185 23 1 11.4063 0.9067 -4.5479 24 1 9.6404 0.2707 -6.0834 25 6 7.3161 -3.6736 -3.1909 26 6 7.8599 -4.3486 -4.4516 27 6 6.4055 -3.8760 -4.4036 28 1 -0.5399 0.9354 0.0004 29 1 -0.5400 -0.9352 0.0004 30 1 1.8499 -0.9353 0.0045 31 1 2.6214 1.4024 -0.9315 32 1 1.3587 2.1316 0.0895 33 1 1.6709 2.3831 2.4448 34 1 3.2296 2.4213 4.3489 35 1 5.4617 1.4057 4.1376 36 1 6.1368 0.3421 2.0232 37 1 6.6998 0.3791 0.0066 38 1 6.0469 -1.1743 0.5802 39 1 6.8734 0.7002 -2.4115 40 1 8.3372 -1.0128 -1.3582 41 1 7.5445 -2.5163 -0.8295 42 1 10.9009 -0.4052 -2.2138 43 1 7.1399 -4.3031 -2.3186 44 1 8.5546 -3.7781 -5.0680 45 1 8.0418 -5.4224 -4.4090 46 1 5.6305 -4.6390 -4.3294 47 1 6.1428 -2.9945 -4.9884 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000355942758.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:40:03 Heat of formation + Delta-G solvation = -12.629811 kcal Electronic energy + Delta-G solvation = -26734.266158 eV Core-core repulsion = 23076.798769 eV Total energy + Delta-G solvation = -3657.467390 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.25944 -39.40554 -38.45917 -37.26027 -36.04540 -35.03715 -32.85523 -32.20331 -31.30828 -30.34797 -27.46073 -27.15458 -25.49131 -23.32029 -22.95467 -22.75094 -22.05196 -21.63458 -20.65706 -19.11826 -18.33547 -17.63096 -17.35511 -17.01257 -16.81907 -16.29442 -16.18689 -15.86420 -15.72231 -15.39359 -15.17492 -15.04814 -14.47955 -14.24751 -14.08487 -13.81577 -13.56822 -13.31123 -13.03179 -12.80875 -12.70653 -12.70407 -12.42101 -12.32933 -12.17269 -12.06605 -11.92772 -11.89063 -11.86085 -11.58434 -11.40498 -10.98043 -10.76568 -10.42608 -10.22349 -9.77488 -9.05149 -8.39469 -7.83038 -5.41134 0.37592 0.51919 1.43933 1.44059 1.48891 1.55565 2.17858 2.50205 2.83068 3.16381 3.39583 3.49256 3.68057 3.83649 3.87864 3.99150 4.06001 4.16186 4.25473 4.28182 4.29780 4.33286 4.44999 4.46632 4.48947 4.53746 4.62461 4.69359 4.73531 4.77819 4.94423 4.94793 5.03880 5.08615 5.10468 5.15491 5.35256 5.43572 5.52492 5.54909 5.60927 5.62053 5.73577 5.75049 5.89317 5.93141 6.47158 6.50561 6.89700 7.17443 7.83433 8.35148 9.13545 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.013509 B = 0.003531 C = 0.003179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2072.227403 B = 7928.023210 C = 8804.494690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.156 4.156 3 C -0.043 4.043 4 C -0.128 4.128 5 C -0.082 4.082 6 C -0.159 4.159 7 C -0.089 4.089 8 C -0.223 4.223 9 C 0.109 3.891 10 O -0.318 6.318 11 C 0.041 3.959 12 C 0.105 3.895 13 H 0.081 0.919 14 O -0.556 6.556 15 C 0.127 3.873 16 N -0.557 5.557 17 C -0.237 4.237 18 H 0.041 0.959 19 C -0.024 4.024 20 N -0.918 5.918 21 Si 0.948 3.052 22 H -0.279 1.279 23 H -0.295 1.295 24 H -0.282 1.282 25 C 0.102 3.898 26 C -0.192 4.192 27 C -0.208 4.208 28 H 0.112 0.888 29 H 0.105 0.895 30 H 0.089 0.911 31 H 0.063 0.937 32 H 0.093 0.907 33 H 0.150 0.850 34 H 0.151 0.849 35 H 0.145 0.855 36 H 0.129 0.871 37 H 0.063 0.937 38 H 0.079 0.921 39 H 0.368 0.632 40 H 0.081 0.919 41 H 0.048 0.952 42 H 0.254 0.746 43 H 0.109 0.891 44 H 0.070 0.930 45 H 0.103 0.897 46 H 0.104 0.896 47 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.458 3.379 12.066 19.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.174 4.174 3 C -0.080 4.080 4 C -0.129 4.129 5 C -0.100 4.100 6 C -0.177 4.177 7 C -0.107 4.107 8 C -0.242 4.242 9 C 0.063 3.937 10 O -0.231 6.231 11 C -0.035 4.035 12 C 0.043 3.957 13 H 0.099 0.901 14 O -0.360 6.360 15 C 0.000 4.000 16 N -0.273 5.273 17 C -0.368 4.368 18 H 0.059 0.941 19 C -0.221 4.221 20 N -0.562 5.562 21 Si 0.777 3.223 22 H -0.206 1.206 23 H -0.221 1.221 24 H -0.207 1.207 25 C -0.007 4.007 26 C -0.231 4.231 27 C -0.249 4.249 28 H 0.130 0.870 29 H 0.124 0.876 30 H 0.107 0.893 31 H 0.082 0.918 32 H 0.111 0.889 33 H 0.168 0.832 34 H 0.168 0.832 35 H 0.163 0.837 36 H 0.146 0.854 37 H 0.081 0.919 38 H 0.097 0.903 39 H 0.215 0.785 40 H 0.098 0.902 41 H 0.067 0.933 42 H 0.063 0.937 43 H 0.127 0.873 44 H 0.088 0.912 45 H 0.122 0.878 46 H 0.122 0.878 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -14.925 3.141 11.749 19.252 hybrid contribution 1.492 0.779 -0.576 1.779 sum -13.432 3.919 11.173 17.906 Atomic orbital electron populations 1.23985 0.95028 1.02919 1.00368 1.22790 0.96350 0.97656 1.00598 1.19536 0.96428 0.96412 0.95579 1.19381 0.92811 1.02892 0.97780 1.21180 1.00475 0.97229 0.91068 1.21378 0.94038 1.02342 0.99970 1.21265 0.97120 0.95605 0.96698 1.21482 1.00728 1.07197 0.94771 1.19286 0.94315 0.94494 0.85576 1.86145 1.33936 1.70315 1.32736 1.23563 0.82313 0.97786 0.99845 1.22609 0.99508 0.89048 0.84562 0.90144 1.86512 1.58072 1.38448 1.53003 1.21427 0.94541 0.97714 0.86320 1.43307 1.64167 1.09087 1.10711 1.18817 1.09218 1.19053 0.89695 0.94116 1.25577 0.95859 1.02224 0.98391 1.69975 1.18339 1.41587 1.26305 0.85586 0.76508 0.80893 0.79269 1.20578 1.22122 1.20719 1.21447 1.00692 0.87381 0.91140 1.23047 0.96479 0.99818 1.03735 1.23279 0.93196 1.02200 1.06207 0.86979 0.87630 0.89252 0.91837 0.88852 0.83194 0.83163 0.83716 0.85352 0.91923 0.90293 0.78548 0.90150 0.93323 0.93680 0.87345 0.91171 0.87833 0.87793 0.91965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.45 14.32 67.77 0.97 -2.48 16 2 C -0.16 -3.69 9.50 25.64 0.24 -3.44 16 3 C -0.04 -1.03 5.51 29.10 0.16 -0.87 16 4 C -0.13 -3.28 5.13 -19.77 -0.10 -3.38 16 5 C -0.08 -1.64 9.68 22.26 0.22 -1.43 16 6 C -0.16 -2.93 10.04 22.28 0.22 -2.71 16 7 C -0.09 -1.85 10.04 22.26 0.22 -1.62 16 8 C -0.22 -5.78 9.04 22.37 0.20 -5.58 16 9 C 0.11 3.20 6.66 22.50 0.15 3.35 16 10 O -0.32 -10.66 9.24 -87.84 -0.81 -11.47 16 11 C 0.04 1.32 4.37 71.98 0.31 1.64 16 12 C 0.10 4.03 3.52 30.60 0.11 4.13 16 13 H 0.08 3.22 8.14 -2.39 -0.02 3.20 16 14 O -0.56 -24.11 12.58 -144.34 -1.82 -25.92 16 15 C 0.13 5.44 5.05 86.38 0.44 5.88 16 16 N -0.56 -26.51 2.73 -678.03 -1.85 -28.36 16 17 C -0.24 -12.54 7.39 84.03 0.62 -11.92 16 18 H 0.04 2.29 7.21 -2.91 -0.02 2.27 16 19 C -0.02 -1.24 4.97 84.86 0.42 -0.82 16 20 N -0.92 -50.03 11.44 21.65 0.25 -49.78 16 21 Si 0.95 43.68 29.60 68.60 2.03 45.71 16 22 H -0.28 -12.56 7.11 99.48 0.71 -11.86 16 23 H -0.29 -13.58 7.11 99.48 0.71 -12.88 16 24 H -0.28 -13.04 7.11 99.48 0.71 -12.34 16 25 C 0.10 4.21 6.62 44.99 0.30 4.51 16 26 C -0.19 -7.52 9.81 30.59 0.30 -7.22 16 27 C -0.21 -7.88 10.08 30.60 0.31 -7.58 16 28 H 0.11 1.66 7.84 -2.91 -0.02 1.64 16 29 H 0.11 1.72 8.06 -2.91 -0.02 1.70 16 30 H 0.09 2.42 8.06 -2.91 -0.02 2.39 16 31 H 0.06 1.84 7.69 -2.38 -0.02 1.82 16 32 H 0.09 1.77 7.70 -2.39 -0.02 1.75 16 33 H 0.15 2.15 8.06 -2.92 -0.02 2.13 16 34 H 0.15 1.82 8.06 -2.91 -0.02 1.80 16 35 H 0.15 2.23 8.06 -2.92 -0.02 2.21 16 36 H 0.13 3.20 6.30 -2.91 -0.02 3.18 16 37 H 0.06 1.99 7.66 -2.39 -0.02 1.97 16 38 H 0.08 2.26 7.66 -2.39 -0.02 2.24 16 39 H 0.37 15.20 9.04 -74.06 -0.67 14.53 16 40 H 0.08 3.88 5.51 -2.38 -0.01 3.87 16 41 H 0.05 1.92 8.04 -2.39 -0.02 1.90 16 42 H 0.25 13.48 8.32 -92.71 -0.77 12.71 16 43 H 0.11 3.97 8.10 -2.39 -0.02 3.95 16 44 H 0.07 3.16 6.96 -2.39 -0.02 3.14 16 45 H 0.10 3.39 8.14 -2.39 -0.02 3.37 16 46 H 0.10 3.26 8.14 -2.38 -0.02 3.24 16 47 H 0.06 2.66 7.99 -2.39 -0.02 2.64 16 Total: -1.00 -61.97 389.38 3.18 -58.79 By element: Atomic # 1 Polarization: 40.30 SS G_CDS: 0.28 Total: 40.58 kcal Atomic # 6 Polarization: -34.64 SS G_CDS: 5.10 Total: -29.55 kcal Atomic # 7 Polarization: -76.54 SS G_CDS: -1.60 Total: -78.14 kcal Atomic # 8 Polarization: -34.77 SS G_CDS: -2.63 Total: -37.40 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 2.03 Total: 45.71 kcal Total: -61.97 3.18 -58.79 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355942758.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.162 kcal (2) G-P(sol) polarization free energy of solvation -61.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.792 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds