Wall clock time and date at job start Tue Mar 31 2020 12:40:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50705 * 120.00008 * 2 1 4 4 C 1.50704 * 109.46905 * 125.00245 * 3 2 1 5 5 C 1.38166 * 120.02609 * 265.00287 * 4 3 2 6 6 C 1.38241 * 120.05260 * 180.29668 * 5 4 3 7 7 C 1.38292 * 120.11281 * 359.45251 * 6 5 4 8 8 C 1.38131 * 120.05182 * 0.54372 * 7 6 5 9 9 C 1.38710 * 120.02742 * 85.02380 * 4 3 2 10 10 O 1.35905 * 120.05355 * 359.95722 * 9 4 3 11 11 C 1.42895 * 116.99577 * 179.97438 * 10 9 4 12 12 C 1.53004 * 109.46946 * 180.02562 * 11 10 9 13 13 H 1.09000 * 109.47533 * 54.99490 * 12 11 10 14 14 O 1.42909 * 109.46751 * 294.99900 * 12 11 10 15 15 C 1.52995 * 109.47279 * 174.99913 * 12 11 10 16 16 N 1.46504 * 109.47097 * 184.99408 * 15 12 11 17 17 C 1.36942 * 119.99591 * 90.00211 * 16 15 12 18 18 H 1.07994 * 119.99865 * 304.51440 * 17 16 15 19 19 C 1.38815 * 120.00021 * 124.51541 * 17 16 15 20 20 N 1.31614 * 120.00157 * 164.63066 * 19 17 16 21 21 Si 1.86802 * 119.99724 * 344.62966 * 19 17 16 22 22 H 1.48504 * 109.47027 * 91.87031 * 21 19 17 23 23 H 1.48502 * 109.46836 * 211.86819 * 21 19 17 24 24 H 1.48501 * 109.47281 * 331.86870 * 21 19 17 25 25 C 1.46495 * 120.00135 * 269.99942 * 16 15 12 26 26 C 1.53001 * 117.49701 * 183.08681 * 25 16 15 27 27 C 1.53005 * 117.49834 * 114.42771 * 25 16 15 28 28 H 1.08001 * 120.00213 * 359.97438 * 1 2 3 29 29 H 1.08007 * 119.99873 * 179.97438 * 1 2 3 30 30 H 1.08001 * 120.00213 * 180.02562 * 2 1 3 31 31 H 1.09004 * 109.46656 * 5.00917 * 3 2 1 32 32 H 1.08993 * 109.47624 * 245.00735 * 3 2 1 33 33 H 1.07994 * 119.97865 * 0.02562 * 5 4 3 34 34 H 1.07994 * 119.94764 * 179.69744 * 6 5 4 35 35 H 1.07997 * 119.97505 * 180.29621 * 7 6 5 36 36 H 1.08004 * 120.02485 * 179.70112 * 8 7 6 37 37 H 1.09003 * 109.47396 * 299.99504 * 11 10 9 38 38 H 1.08997 * 109.47679 * 60.00071 * 11 10 9 39 39 H 0.96700 * 113.99800 * 299.99678 * 14 12 11 40 40 H 1.08998 * 109.47308 * 304.99783 * 15 12 11 41 41 H 1.09004 * 109.47039 * 64.99696 * 15 12 11 42 42 H 0.96998 * 119.99981 * 179.97438 * 20 19 17 43 43 H 1.08996 * 115.55377 * 328.75591 * 25 16 15 44 44 H 1.09001 * 117.50068 * 359.97438 * 26 25 16 45 45 H 1.09000 * 117.49924 * 145.02133 * 26 25 16 46 46 H 1.08999 * 117.49593 * 214.98050 * 27 25 16 47 47 H 1.08999 * 117.49545 * 359.97438 * 27 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0205 1.3326 1.1639 5 6 2.6460 1.9283 2.3529 6 6 3.5257 1.9593 3.4189 7 6 4.7780 1.3844 3.3019 8 6 5.1571 0.7876 2.1153 9 6 4.2781 0.7603 1.0421 10 8 4.6486 0.1733 -0.1263 11 6 5.9585 -0.3951 -0.1800 12 6 6.1938 -1.0043 -1.5636 13 1 6.0165 -0.2482 -2.3285 14 8 5.2978 -2.1001 -1.7603 15 6 7.6373 -1.5016 -1.6632 16 7 7.8976 -1.9757 -3.0247 17 6 8.3729 -1.1089 -3.9723 18 1 7.8350 -0.1979 -4.1891 19 6 9.5461 -1.4012 -4.6544 20 7 9.8471 -0.7474 -5.7562 21 14 10.6976 -2.7226 -4.0082 22 1 10.3518 -4.0269 -4.6282 23 1 12.0987 -2.3682 -4.3495 24 1 10.5576 -2.8230 -2.5332 25 6 7.6497 -3.3771 -3.3723 26 6 8.0092 -3.8276 -4.7896 27 6 6.5412 -3.6679 -4.3861 28 1 -0.5400 0.9353 0.0004 29 1 -0.5400 -0.9354 -0.0004 30 1 1.8500 -0.9353 -0.0004 31 1 1.3585 2.1316 0.0897 32 1 2.6212 1.4028 -0.9313 33 1 1.6670 2.3741 2.4483 34 1 3.2330 2.4297 4.3459 35 1 5.4617 1.4057 4.1377 36 1 6.1370 0.3430 2.0228 37 1 6.6998 0.3822 0.0052 38 1 6.0490 -1.1718 0.5795 39 1 5.3995 -2.8121 -1.1140 40 1 8.3199 -0.6857 -1.4257 41 1 7.7893 -2.3192 -0.9585 42 1 10.6671 -0.9514 -6.2326 43 1 7.7937 -4.0945 -2.5645 44 1 8.4298 -3.0812 -5.4635 45 1 8.3894 -4.8415 -4.9142 46 1 5.9563 -4.5769 -4.2453 47 1 5.9963 -2.8166 -4.7941 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000355942760.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:40:10 Heat of formation + Delta-G solvation = -11.137474 kcal Electronic energy + Delta-G solvation = -26622.568658 eV Core-core repulsion = 22965.165981 eV Total energy + Delta-G solvation = -3657.402677 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.26064 -39.55484 -38.58088 -37.34429 -36.04275 -34.72801 -33.67573 -32.23782 -31.40435 -30.40983 -27.54560 -27.17247 -25.38668 -23.32350 -23.17656 -22.76154 -22.07350 -21.66147 -20.65977 -19.06721 -18.73331 -17.78676 -17.34801 -16.93427 -16.70814 -16.50006 -16.31349 -15.77012 -15.64876 -15.46568 -15.17333 -15.13454 -14.62479 -14.42502 -14.09160 -13.93004 -13.73392 -13.50452 -13.24279 -13.00878 -12.80462 -12.54567 -12.39789 -12.17354 -12.13296 -12.06578 -11.97045 -11.87952 -11.81415 -11.61459 -11.26549 -11.00031 -10.83419 -10.46197 -10.22619 -9.76309 -9.04231 -8.37409 -8.12587 -5.88281 0.38727 0.52910 1.44041 1.44633 1.45703 1.58453 2.19349 2.46610 2.84132 3.01711 3.19074 3.43482 3.61736 3.81358 3.88064 3.97398 4.03689 4.15852 4.24608 4.27378 4.27773 4.33047 4.35623 4.43903 4.47006 4.48400 4.53330 4.57162 4.71622 4.76873 4.94182 4.95186 4.99049 5.03006 5.08320 5.15367 5.21787 5.38481 5.43707 5.53292 5.59046 5.62286 5.75304 5.89451 5.93646 5.97651 6.26405 6.51583 7.00894 7.10648 7.57158 8.07522 8.95059 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.018220 B = 0.003102 C = 0.002853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1536.369618 B = 9024.065200 C = 9813.183920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.153 4.153 3 C -0.043 4.043 4 C -0.130 4.130 5 C -0.083 4.083 6 C -0.161 4.161 7 C -0.088 4.088 8 C -0.219 4.219 9 C 0.110 3.890 10 O -0.321 6.321 11 C 0.038 3.962 12 C 0.106 3.894 13 H 0.060 0.940 14 O -0.556 6.556 15 C 0.124 3.876 16 N -0.576 5.576 17 C -0.279 4.279 18 H 0.015 0.985 19 C 0.012 3.988 20 N -0.947 5.947 21 Si 0.950 3.050 22 H -0.251 1.251 23 H -0.315 1.315 24 H -0.255 1.255 25 C 0.114 3.886 26 C -0.219 4.219 27 C -0.184 4.184 28 H 0.111 0.889 29 H 0.105 0.895 30 H 0.091 0.909 31 H 0.091 0.909 32 H 0.061 0.939 33 H 0.147 0.853 34 H 0.149 0.851 35 H 0.147 0.853 36 H 0.137 0.863 37 H 0.074 0.926 38 H 0.087 0.913 39 H 0.378 0.622 40 H 0.061 0.939 41 H 0.082 0.918 42 H 0.265 0.735 43 H 0.124 0.876 44 H 0.076 0.924 45 H 0.099 0.901 46 H 0.105 0.895 47 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.993 -0.417 20.876 24.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.172 4.172 3 C -0.080 4.080 4 C -0.131 4.131 5 C -0.101 4.101 6 C -0.179 4.179 7 C -0.106 4.106 8 C -0.238 4.238 9 C 0.065 3.935 10 O -0.235 6.235 11 C -0.038 4.038 12 C 0.044 3.956 13 H 0.078 0.922 14 O -0.362 6.362 15 C -0.002 4.002 16 N -0.295 5.295 17 C -0.409 4.409 18 H 0.033 0.967 19 C -0.186 4.186 20 N -0.589 5.589 21 Si 0.776 3.224 22 H -0.175 1.175 23 H -0.244 1.244 24 H -0.179 1.179 25 C 0.008 3.992 26 C -0.257 4.257 27 C -0.224 4.224 28 H 0.129 0.871 29 H 0.123 0.877 30 H 0.109 0.891 31 H 0.109 0.891 32 H 0.080 0.920 33 H 0.164 0.836 34 H 0.166 0.834 35 H 0.165 0.835 36 H 0.155 0.845 37 H 0.092 0.908 38 H 0.105 0.895 39 H 0.226 0.774 40 H 0.080 0.920 41 H 0.100 0.900 42 H 0.074 0.926 43 H 0.141 0.859 44 H 0.094 0.906 45 H 0.117 0.883 46 H 0.123 0.877 47 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -13.162 -0.028 20.072 24.002 hybrid contribution 1.201 -0.387 -0.263 1.289 sum -11.961 -0.415 19.809 23.144 Atomic orbital electron populations 1.23979 0.95129 1.02841 1.00618 1.22796 0.96283 0.97721 1.00351 1.19531 0.96482 0.96354 0.95621 1.19373 0.93003 1.03127 0.97575 1.21154 1.00412 0.97343 0.91187 1.21377 0.94223 1.02376 0.99907 1.21286 0.96978 0.95484 0.96887 1.21497 1.00817 1.07089 0.94400 1.19239 0.94233 0.94380 0.85667 1.86156 1.34261 1.70291 1.32812 1.23605 0.82544 0.98409 0.99231 1.22384 0.91429 0.88275 0.93526 0.92218 1.86656 1.60254 1.31270 1.57975 1.21611 0.93086 0.99375 0.86097 1.43442 1.74089 1.05107 1.06892 1.18224 1.03678 1.02797 1.16221 0.96735 1.26478 0.97984 0.98948 0.95226 1.70006 1.26061 1.45411 1.17380 0.85762 0.75938 0.80507 0.80238 1.17548 1.24416 1.17900 1.21516 1.00207 0.86555 0.90967 1.23477 0.99990 1.01341 1.00871 1.23130 0.90775 1.01469 1.07009 0.87127 0.87674 0.89051 0.89093 0.92018 0.83553 0.83364 0.83524 0.84536 0.90821 0.89451 0.77406 0.92035 0.89995 0.92616 0.85910 0.90557 0.88299 0.87675 0.92821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.49 14.32 67.78 0.97 -2.51 16 2 C -0.15 -3.55 9.50 25.65 0.24 -3.31 16 3 C -0.04 -1.01 5.51 29.10 0.16 -0.85 16 4 C -0.13 -3.12 5.13 -19.77 -0.10 -3.22 16 5 C -0.08 -1.56 9.68 22.25 0.22 -1.35 16 6 C -0.16 -2.66 10.04 22.28 0.22 -2.44 16 7 C -0.09 -1.57 10.04 22.26 0.22 -1.34 16 8 C -0.22 -4.80 9.04 22.37 0.20 -4.60 16 9 C 0.11 2.91 6.66 22.50 0.15 3.06 16 10 O -0.32 -9.70 9.24 -87.84 -0.81 -10.52 16 11 C 0.04 1.00 4.37 71.98 0.31 1.31 16 12 C 0.11 3.53 3.49 30.59 0.11 3.63 16 13 H 0.06 2.55 8.14 -2.39 -0.02 2.53 16 14 O -0.56 -18.17 12.86 -144.34 -1.86 -20.03 16 15 C 0.12 4.33 5.37 86.38 0.46 4.80 16 16 N -0.58 -25.73 2.01 -678.04 -1.37 -27.10 16 17 C -0.28 -15.67 9.17 84.03 0.77 -14.90 16 18 H 0.02 0.97 8.06 -2.91 -0.02 0.95 16 19 C 0.01 0.69 3.73 84.86 0.32 1.00 16 20 N -0.95 -58.59 13.97 21.65 0.30 -58.29 16 21 Si 0.95 44.48 24.88 68.60 1.71 46.18 16 22 H -0.25 -10.92 5.79 99.48 0.58 -10.35 16 23 H -0.32 -15.23 7.11 99.48 0.71 -14.53 16 24 H -0.26 -11.15 7.11 99.48 0.71 -10.44 16 25 C 0.11 4.52 4.76 44.99 0.21 4.74 16 26 C -0.22 -9.33 6.69 30.62 0.20 -9.12 16 27 C -0.18 -7.26 10.36 30.62 0.32 -6.94 16 28 H 0.11 1.65 7.84 -2.91 -0.02 1.63 16 29 H 0.10 1.71 8.06 -2.91 -0.02 1.69 16 30 H 0.09 2.42 8.06 -2.91 -0.02 2.39 16 31 H 0.09 1.69 7.70 -2.39 -0.02 1.68 16 32 H 0.06 1.74 7.69 -2.39 -0.02 1.72 16 33 H 0.15 2.00 8.06 -2.91 -0.02 1.98 16 34 H 0.15 1.58 8.06 -2.91 -0.02 1.56 16 35 H 0.15 1.79 8.06 -2.91 -0.02 1.76 16 36 H 0.14 2.60 6.30 -2.91 -0.02 2.58 16 37 H 0.07 1.82 7.66 -2.39 -0.02 1.81 16 38 H 0.09 1.78 7.66 -2.39 -0.02 1.76 16 39 H 0.38 8.84 9.05 -74.06 -0.67 8.17 16 40 H 0.06 2.21 8.04 -2.39 -0.02 2.19 16 41 H 0.08 2.24 8.07 -2.39 -0.02 2.22 16 42 H 0.26 15.50 8.31 -92.71 -0.77 14.73 16 43 H 0.12 3.96 8.14 -2.39 -0.02 3.94 16 44 H 0.08 3.97 5.08 -2.39 -0.01 3.96 16 45 H 0.10 3.67 7.85 -2.39 -0.02 3.65 16 46 H 0.11 3.40 8.14 -2.39 -0.02 3.38 16 47 H 0.05 2.50 8.14 -2.39 -0.02 2.48 16 Total: -1.00 -71.48 383.01 3.12 -68.36 By element: Atomic # 1 Polarization: 33.29 SS G_CDS: 0.15 Total: 33.44 kcal Atomic # 6 Polarization: -37.04 SS G_CDS: 5.00 Total: -32.05 kcal Atomic # 7 Polarization: -84.32 SS G_CDS: -1.06 Total: -85.39 kcal Atomic # 8 Polarization: -27.88 SS G_CDS: -2.67 Total: -30.55 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 1.71 Total: 46.18 kcal Total: -71.48 3.12 -68.36 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355942760.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.223 kcal (2) G-P(sol) polarization free energy of solvation -71.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.361 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds