Wall clock time and date at job start Tue Mar 31 2020 12:18:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53003 * 109.47127 * 2 1 4 4 O 1.42895 * 110.64027 * 303.14371 * 3 2 1 5 5 C 1.55153 * 110.71928 * 66.47921 * 3 2 1 6 6 C 1.54902 * 101.58245 * 153.86434 * 5 3 2 7 7 N 1.47421 * 104.83272 * 322.98757 * 6 5 3 8 8 C 1.34775 * 125.65347 * 204.08963 * 7 6 5 9 9 O 1.21280 * 120.00111 * 180.02562 * 8 7 6 10 10 C 1.50704 * 119.99835 * 0.04377 * 8 7 6 11 11 C 1.53003 * 109.47168 * 179.97438 * 10 8 7 12 12 H 1.09002 * 109.46525 * 55.00626 * 11 10 8 13 13 C 1.50693 * 109.47138 * 295.00344 * 11 10 8 14 14 H 1.07997 * 120.00347 * 334.72174 * 13 11 10 15 15 C 1.37880 * 119.99571 * 154.72204 * 13 11 10 16 16 N 1.31517 * 119.99784 * 184.85306 * 15 13 11 17 17 Si 1.86798 * 120.00193 * 4.85357 * 15 13 11 18 18 H 1.48503 * 109.47315 * 84.63691 * 17 15 13 19 19 H 1.48499 * 109.46959 * 204.63467 * 17 15 13 20 20 H 1.48493 * 109.47146 * 324.63509 * 17 15 13 21 21 C 1.50699 * 109.46754 * 175.00116 * 11 10 8 22 22 C 1.38230 * 120.00191 * 55.28458 * 21 11 10 23 23 C 1.38235 * 120.00025 * 179.74411 * 22 21 11 24 24 C 1.38235 * 120.00165 * 0.54043 * 23 22 21 25 25 C 1.38242 * 119.99516 * 359.71158 * 24 23 22 26 26 C 1.38232 * 120.00218 * 0.02562 * 25 24 23 27 27 C 1.47022 * 108.70089 * 24.13277 * 7 6 5 28 28 H 1.09003 * 109.47153 * 299.99883 * 1 2 3 29 29 H 1.08999 * 109.47183 * 59.99886 * 1 2 3 30 30 H 1.08994 * 109.47130 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47183 * 120.00114 * 2 1 3 32 32 H 1.08999 * 109.46692 * 240.00152 * 2 1 3 33 33 H 0.96700 * 114.00531 * 59.29976 * 4 3 2 34 34 H 1.09001 * 111.00894 * 271.94104 * 5 3 2 35 35 H 1.09008 * 111.00482 * 35.78671 * 5 3 2 36 36 H 1.09003 * 110.37001 * 204.15523 * 6 5 3 37 37 H 1.09000 * 110.46289 * 81.87929 * 6 5 3 38 38 H 1.08997 * 109.47189 * 300.00426 * 10 8 7 39 39 H 1.09003 * 109.46705 * 60.00108 * 10 8 7 40 40 H 0.97005 * 119.99876 * 179.97438 * 16 15 13 41 41 H 1.08000 * 119.99717 * 359.97438 * 22 21 11 42 42 H 1.08000 * 120.00360 * 180.27338 * 23 22 21 43 43 H 1.08001 * 120.00475 * 179.72404 * 24 23 22 44 44 H 1.08001 * 119.99504 * 179.97438 * 25 24 23 45 45 H 1.07997 * 119.99602 * 179.97438 * 26 25 24 46 46 H 1.09007 * 109.87789 * 239.51990 * 27 7 6 47 47 H 1.08995 * 109.88745 * 118.35580 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 1.5186 2.1611 -1.1197 5 6 1.6770 2.1531 1.3306 6 6 2.7882 3.2284 1.4222 7 7 3.9956 2.5695 0.8920 8 6 5.2673 2.9130 1.1770 9 8 6.1874 2.2981 0.6807 10 6 5.5461 4.0610 2.1128 11 6 7.0580 4.2392 2.2651 12 1 7.5104 4.3611 1.2809 13 6 7.6416 3.0245 2.9394 14 1 7.0241 2.4146 3.5820 15 6 8.9641 2.6917 2.7358 16 7 9.4486 1.5807 3.2462 17 14 10.0675 3.8189 1.7352 18 1 10.6112 4.8863 2.6129 19 1 11.1882 3.0320 1.1606 20 1 9.2805 4.4344 0.6366 21 6 7.3379 5.4612 3.1015 22 6 6.7798 5.5798 4.3605 23 6 7.0408 6.6982 5.1297 24 6 7.8510 7.7033 4.6355 25 6 8.4050 7.5871 3.3743 26 6 8.1484 6.4662 2.6072 27 6 3.5829 1.4762 0.0000 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 1.8934 -0.5138 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 0.5529 2.2020 -1.1457 34 1 0.6911 2.6141 1.2711 35 1 1.7327 1.4610 2.1710 36 1 2.9431 3.5266 2.4591 37 1 2.5307 4.0952 0.8135 38 1 5.1112 4.9744 1.7070 39 1 5.1054 3.8505 3.0873 40 1 10.3790 1.3464 3.1026 41 1 6.1427 4.7968 4.7446 42 1 6.6083 6.7889 6.1152 43 1 8.0514 8.5792 5.2347 44 1 9.0377 8.3726 2.9880 45 1 8.5809 6.3757 1.6218 46 1 3.9744 0.5283 0.3697 47 1 3.9495 1.6626 -1.0094 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000356890064.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:18:56 Heat of formation + Delta-G solvation = -61.038785 kcal Electronic energy + Delta-G solvation = -27081.192517 eV Core-core repulsion = 23421.625957 eV Total energy + Delta-G solvation = -3659.566560 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 2.32 seconds Orbital eigenvalues (eV) -40.10941 -38.80353 -37.95946 -35.34056 -34.07467 -33.01996 -31.66395 -30.26697 -30.09800 -29.43541 -28.30031 -25.91273 -23.65119 -22.98999 -22.39719 -21.84583 -20.39528 -19.78560 -18.56629 -17.04646 -16.87306 -16.63090 -16.04363 -15.81395 -15.08083 -14.89908 -14.58672 -14.28926 -14.14291 -14.01812 -13.64171 -13.15505 -12.94402 -12.75876 -12.70362 -12.51509 -12.35861 -12.19449 -12.13159 -12.00762 -11.80645 -11.70949 -11.53539 -11.23495 -11.08441 -10.71840 -10.69626 -10.56489 -10.34124 -10.05287 -9.84879 -9.56814 -9.15582 -8.95700 -8.44486 -8.21604 -8.19981 -7.79173 -5.96448 -3.92338 2.08068 2.14610 3.36278 3.43388 3.46510 3.47135 3.47930 3.94457 4.28972 4.47838 4.51567 4.53142 4.57490 4.86973 5.02849 5.07836 5.25627 5.32334 5.41614 5.51515 5.52387 5.53880 5.58715 5.63823 5.67692 5.68266 5.75067 5.84979 5.91233 5.92889 5.96631 6.01388 6.08196 6.09648 6.21878 6.32877 6.51267 6.66582 6.73860 6.83534 7.06158 7.13619 7.25661 7.44257 7.60321 7.72053 7.82375 8.01928 8.54688 8.98453 9.02914 9.66897 11.16737 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.015665 B = 0.003773 C = 0.003313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1786.981435 B = 7419.561319 C = 8448.641452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.143 4.143 3 C 0.120 3.880 4 O -0.548 6.548 5 C -0.157 4.157 6 C 0.107 3.893 7 N -0.633 5.633 8 C 0.530 3.470 9 O -0.496 6.496 10 C -0.108 4.108 11 C 0.047 3.953 12 H 0.054 0.946 13 C -0.481 4.481 14 H 0.071 0.929 15 C 0.083 3.917 16 N -0.898 5.898 17 Si 0.868 3.132 18 H -0.272 1.272 19 H -0.293 1.293 20 H -0.262 1.262 21 C -0.037 4.037 22 C -0.107 4.107 23 C -0.124 4.124 24 C -0.151 4.151 25 C -0.122 4.122 26 C -0.142 4.142 27 C 0.123 3.877 28 H 0.058 0.942 29 H 0.055 0.945 30 H 0.060 0.940 31 H 0.077 0.923 32 H 0.073 0.927 33 H 0.373 0.627 34 H 0.083 0.917 35 H 0.085 0.915 36 H 0.076 0.924 37 H 0.066 0.934 38 H 0.069 0.931 39 H 0.084 0.916 40 H 0.262 0.738 41 H 0.118 0.882 42 H 0.111 0.889 43 H 0.108 0.892 44 H 0.109 0.891 45 H 0.110 0.890 46 H 0.078 0.922 47 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.774 4.206 -2.954 19.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.181 4.181 3 C 0.078 3.922 4 O -0.355 6.355 5 C -0.195 4.195 6 C -0.017 4.017 7 N -0.372 5.372 8 C 0.319 3.681 9 O -0.367 6.367 10 C -0.148 4.148 11 C 0.028 3.972 12 H 0.072 0.928 13 C -0.518 4.518 14 H 0.089 0.911 15 C -0.119 4.119 16 N -0.536 5.536 17 Si 0.696 3.304 18 H -0.198 1.198 19 H -0.219 1.219 20 H -0.188 1.188 21 C -0.038 4.038 22 C -0.126 4.126 23 C -0.142 4.142 24 C -0.169 4.169 25 C -0.140 4.140 26 C -0.160 4.160 27 C 0.000 4.000 28 H 0.077 0.923 29 H 0.074 0.926 30 H 0.079 0.921 31 H 0.096 0.904 32 H 0.092 0.908 33 H 0.221 0.779 34 H 0.102 0.898 35 H 0.104 0.896 36 H 0.095 0.905 37 H 0.084 0.916 38 H 0.087 0.913 39 H 0.102 0.898 40 H 0.072 0.928 41 H 0.136 0.864 42 H 0.129 0.871 43 H 0.127 0.873 44 H 0.127 0.873 45 H 0.128 0.872 46 H 0.096 0.904 47 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -17.313 3.831 -3.324 18.041 hybrid contribution 0.151 0.400 -0.233 0.487 sum -17.162 4.232 -3.557 18.030 Atomic orbital electron populations 1.21793 0.95369 1.02391 1.01773 1.22082 0.96492 0.95961 1.03603 1.22162 0.93693 0.90620 0.85676 1.86607 1.25680 1.76780 1.46408 1.23465 0.98964 0.98834 0.98282 1.22159 0.84501 0.95453 0.99541 1.48638 1.05644 1.34362 1.48527 1.20574 0.79820 0.85569 0.82119 1.90762 1.42291 1.52818 1.50866 1.21582 1.00245 0.94724 0.98213 1.18287 0.90855 0.91887 0.96189 0.92751 1.20596 0.96060 1.06573 1.28585 0.91068 1.24865 0.97931 0.94446 0.94704 1.69887 1.14856 1.23005 1.45837 0.87052 0.80590 0.81270 0.81469 1.19774 1.21931 1.18752 1.20765 0.93545 0.93885 0.95600 1.20920 1.00626 0.96857 0.94148 1.21040 0.99278 0.94786 0.99122 1.20855 1.00456 0.99279 0.96309 1.20965 1.00120 0.97877 0.95024 1.21090 1.00568 0.94339 0.99986 1.21701 0.90769 0.91842 0.95667 0.92328 0.92561 0.92138 0.90408 0.90784 0.77881 0.89829 0.89620 0.90521 0.91590 0.91281 0.89821 0.92844 0.86396 0.87136 0.87348 0.87302 0.87238 0.90354 0.90938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.94 9.40 37.16 0.35 -0.59 16 2 C -0.14 -1.21 5.09 -26.73 -0.14 -1.34 16 3 C 0.12 1.24 0.95 -88.79 -0.08 1.16 16 4 O -0.55 -5.66 13.03 -35.23 -0.46 -6.12 16 5 C -0.16 -1.43 5.42 -24.59 -0.13 -1.56 16 6 C 0.11 1.27 6.68 -2.54 -0.02 1.26 16 7 N -0.63 -10.38 3.33 -170.53 -0.57 -10.95 16 8 C 0.53 11.09 7.60 -10.98 -0.08 11.00 16 9 O -0.50 -12.88 15.31 5.56 0.09 -12.80 16 10 C -0.11 -2.09 3.84 -27.88 -0.11 -2.20 16 11 C 0.05 1.11 1.24 -92.93 -0.12 0.99 16 12 H 0.05 1.39 5.26 -51.93 -0.27 1.12 16 13 C -0.48 -13.52 7.19 -34.44 -0.25 -13.77 16 14 H 0.07 2.16 8.05 -52.49 -0.42 1.74 16 15 C 0.08 2.48 5.47 -17.82 -0.10 2.38 16 16 N -0.90 -28.48 13.96 55.43 0.77 -27.71 16 17 Si 0.87 22.99 24.76 -169.99 -4.21 18.78 16 18 H -0.27 -7.03 7.11 56.52 0.40 -6.62 16 19 H -0.29 -7.81 7.11 56.52 0.40 -7.41 16 20 H -0.26 -6.69 5.95 56.52 0.34 -6.36 16 21 C -0.04 -0.80 4.30 -104.63 -0.45 -1.25 16 22 C -0.11 -2.08 8.94 -39.59 -0.35 -2.44 16 23 C -0.12 -2.11 10.05 -39.58 -0.40 -2.51 16 24 C -0.15 -2.50 10.05 -39.58 -0.40 -2.90 16 25 C -0.12 -2.17 10.05 -39.58 -0.40 -2.57 16 26 C -0.14 -2.90 8.15 -39.58 -0.32 -3.23 16 27 C 0.12 1.83 6.23 -3.07 -0.02 1.81 16 28 H 0.06 0.32 7.49 -51.93 -0.39 -0.07 16 29 H 0.06 0.29 6.81 -51.93 -0.35 -0.07 16 30 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 31 H 0.08 0.67 8.10 -51.93 -0.42 0.25 16 32 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 33 H 0.37 2.31 7.37 45.56 0.34 2.65 16 34 H 0.08 0.56 8.13 -51.93 -0.42 0.13 16 35 H 0.09 0.76 8.02 -51.92 -0.42 0.34 16 36 H 0.08 0.85 7.48 -51.93 -0.39 0.46 16 37 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 39 H 0.08 1.50 7.04 -51.93 -0.37 1.13 16 40 H 0.26 7.88 8.31 -40.82 -0.34 7.54 16 41 H 0.12 2.18 7.37 -52.49 -0.39 1.80 16 42 H 0.11 1.56 8.06 -52.49 -0.42 1.14 16 43 H 0.11 1.47 8.06 -52.49 -0.42 1.05 16 44 H 0.11 1.64 8.06 -52.49 -0.42 1.22 16 45 H 0.11 2.24 6.76 -52.49 -0.36 1.89 16 46 H 0.08 1.20 7.82 -51.92 -0.41 0.80 16 47 H 0.07 1.18 8.07 -51.93 -0.42 0.77 16 LS Contribution 370.03 15.07 5.58 5.58 Total: -1.00 -35.62 370.03 -8.65 -44.28 By element: Atomic # 1 Polarization: 11.55 SS G_CDS: -6.84 Total: 4.70 kcal Atomic # 6 Polarization: -12.74 SS G_CDS: -3.01 Total: -15.75 kcal Atomic # 7 Polarization: -38.87 SS G_CDS: 0.21 Total: -38.66 kcal Atomic # 8 Polarization: -18.55 SS G_CDS: -0.37 Total: -18.92 kcal Atomic # 14 Polarization: 22.99 SS G_CDS: -4.21 Total: 18.78 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -35.62 -8.65 -44.28 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356890064.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.763 kcal (2) G-P(sol) polarization free energy of solvation -35.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.276 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.32 seconds