Wall clock time and date at job start Tue Mar 31 2020 12:18:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53003 * 109.47127 * 2 1 4 4 O 1.42895 * 110.64027 * 303.14371 * 3 2 1 5 5 C 1.55153 * 110.71928 * 66.47921 * 3 2 1 6 6 C 1.54902 * 101.58245 * 153.86434 * 5 3 2 7 7 N 1.47421 * 104.83272 * 322.98757 * 6 5 3 8 8 C 1.34775 * 125.65347 * 204.08963 * 7 6 5 9 9 O 1.21280 * 120.00111 * 180.02562 * 8 7 6 10 10 C 1.50704 * 119.99835 * 0.04377 * 8 7 6 11 11 C 1.53003 * 109.47168 * 179.97438 * 10 8 7 12 12 H 1.09002 * 109.46525 * 55.00626 * 11 10 8 13 13 C 1.50693 * 109.47138 * 295.00344 * 11 10 8 14 14 H 1.07997 * 120.00347 * 334.72174 * 13 11 10 15 15 C 1.37880 * 119.99571 * 154.72204 * 13 11 10 16 16 N 1.31517 * 119.99784 * 184.85306 * 15 13 11 17 17 Si 1.86798 * 120.00193 * 4.85357 * 15 13 11 18 18 H 1.48503 * 109.47315 * 84.63691 * 17 15 13 19 19 H 1.48499 * 109.46959 * 204.63467 * 17 15 13 20 20 H 1.48493 * 109.47146 * 324.63509 * 17 15 13 21 21 C 1.50699 * 109.46754 * 175.00116 * 11 10 8 22 22 C 1.38230 * 120.00191 * 55.28458 * 21 11 10 23 23 C 1.38235 * 120.00025 * 179.74411 * 22 21 11 24 24 C 1.38235 * 120.00165 * 0.54043 * 23 22 21 25 25 C 1.38242 * 119.99516 * 359.71158 * 24 23 22 26 26 C 1.38232 * 120.00218 * 0.02562 * 25 24 23 27 27 C 1.47022 * 108.70089 * 24.13277 * 7 6 5 28 28 H 1.09003 * 109.47153 * 299.99883 * 1 2 3 29 29 H 1.08999 * 109.47183 * 59.99886 * 1 2 3 30 30 H 1.08994 * 109.47130 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47183 * 120.00114 * 2 1 3 32 32 H 1.08999 * 109.46692 * 240.00152 * 2 1 3 33 33 H 0.96700 * 114.00531 * 59.29976 * 4 3 2 34 34 H 1.09001 * 111.00894 * 271.94104 * 5 3 2 35 35 H 1.09008 * 111.00482 * 35.78671 * 5 3 2 36 36 H 1.09003 * 110.37001 * 204.15523 * 6 5 3 37 37 H 1.09000 * 110.46289 * 81.87929 * 6 5 3 38 38 H 1.08997 * 109.47189 * 300.00426 * 10 8 7 39 39 H 1.09003 * 109.46705 * 60.00108 * 10 8 7 40 40 H 0.97005 * 119.99876 * 179.97438 * 16 15 13 41 41 H 1.08000 * 119.99717 * 359.97438 * 22 21 11 42 42 H 1.08000 * 120.00360 * 180.27338 * 23 22 21 43 43 H 1.08001 * 120.00475 * 179.72404 * 24 23 22 44 44 H 1.08001 * 119.99504 * 179.97438 * 25 24 23 45 45 H 1.07997 * 119.99602 * 179.97438 * 26 25 24 46 46 H 1.09007 * 109.87789 * 239.51990 * 27 7 6 47 47 H 1.08995 * 109.88745 * 118.35580 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 1.5186 2.1611 -1.1197 5 6 1.6770 2.1531 1.3306 6 6 2.7882 3.2284 1.4222 7 7 3.9956 2.5695 0.8920 8 6 5.2673 2.9130 1.1770 9 8 6.1874 2.2981 0.6807 10 6 5.5461 4.0610 2.1128 11 6 7.0580 4.2392 2.2651 12 1 7.5104 4.3611 1.2809 13 6 7.6416 3.0245 2.9394 14 1 7.0241 2.4146 3.5820 15 6 8.9641 2.6917 2.7358 16 7 9.4486 1.5807 3.2462 17 14 10.0675 3.8189 1.7352 18 1 10.6112 4.8863 2.6129 19 1 11.1882 3.0320 1.1606 20 1 9.2805 4.4344 0.6366 21 6 7.3379 5.4612 3.1015 22 6 6.7798 5.5798 4.3605 23 6 7.0408 6.6982 5.1297 24 6 7.8510 7.7033 4.6355 25 6 8.4050 7.5871 3.3743 26 6 8.1484 6.4662 2.6072 27 6 3.5829 1.4762 0.0000 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 1.8934 -0.5138 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 0.5529 2.2020 -1.1457 34 1 0.6911 2.6141 1.2711 35 1 1.7327 1.4610 2.1710 36 1 2.9431 3.5266 2.4591 37 1 2.5307 4.0952 0.8135 38 1 5.1112 4.9744 1.7070 39 1 5.1054 3.8505 3.0873 40 1 10.3790 1.3464 3.1026 41 1 6.1427 4.7968 4.7446 42 1 6.6083 6.7889 6.1152 43 1 8.0514 8.5792 5.2347 44 1 9.0377 8.3726 2.9880 45 1 8.5809 6.3757 1.6218 46 1 3.9744 0.5283 0.3697 47 1 3.9495 1.6626 -1.0094 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000356890064.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:18:54 Heat of formation + Delta-G solvation = -86.466433 kcal Electronic energy + Delta-G solvation = -27082.295143 eV Core-core repulsion = 23421.625957 eV Total energy + Delta-G solvation = -3660.669186 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.32576 -40.21475 -39.34471 -36.51616 -35.87607 -33.84799 -33.67777 -31.67441 -31.24716 -30.65992 -29.56130 -27.71114 -24.95751 -23.88321 -23.85611 -23.26963 -21.46366 -21.14244 -20.04673 -19.07963 -18.22994 -17.72615 -17.28209 -17.01614 -16.54965 -16.42435 -15.91388 -15.59270 -15.46770 -15.17445 -14.97569 -14.80525 -14.47211 -14.09578 -13.96097 -13.80187 -13.68110 -13.54848 -13.30343 -13.21108 -12.96999 -12.82102 -12.71454 -12.65234 -12.31126 -12.14990 -11.92667 -11.88404 -11.82719 -11.56365 -11.49103 -11.10477 -10.85061 -10.77486 -10.54247 -9.64699 -9.60375 -9.32603 -8.25697 -6.21521 0.64360 0.70395 1.26785 1.30435 1.35969 1.83308 2.05070 2.35535 3.04615 3.09570 3.17627 3.45642 3.58720 3.75681 3.95834 4.06142 4.20176 4.26986 4.27852 4.30634 4.37898 4.42938 4.46720 4.52789 4.57938 4.60784 4.68874 4.74300 4.81282 4.83588 4.88549 4.94405 5.00926 5.12518 5.14317 5.19500 5.24916 5.33892 5.36684 5.43307 5.45581 5.66744 5.73979 5.79267 5.98800 6.29313 6.32001 6.58736 6.76231 6.87432 7.38688 7.40865 8.91578 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.015665 B = 0.003773 C = 0.003313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1786.981435 B = 7419.561319 C = 8448.641452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.141 4.141 3 C 0.133 3.867 4 O -0.563 6.563 5 C -0.145 4.145 6 C 0.094 3.906 7 N -0.629 5.629 8 C 0.520 3.480 9 O -0.566 6.566 10 C -0.099 4.099 11 C 0.050 3.950 12 H 0.028 0.972 13 C -0.460 4.460 14 H 0.035 0.965 15 C 0.020 3.980 16 N -0.952 5.952 17 Si 0.920 3.080 18 H -0.257 1.257 19 H -0.299 1.299 20 H -0.255 1.255 21 C -0.062 4.062 22 C -0.120 4.120 23 C -0.119 4.119 24 C -0.140 4.140 25 C -0.124 4.124 26 C -0.163 4.163 27 C 0.112 3.888 28 H 0.071 0.929 29 H 0.068 0.932 30 H 0.064 0.936 31 H 0.073 0.927 32 H 0.063 0.937 33 H 0.394 0.606 34 H 0.123 0.877 35 H 0.091 0.909 36 H 0.089 0.911 37 H 0.079 0.921 38 H 0.101 0.899 39 H 0.099 0.901 40 H 0.259 0.741 41 H 0.118 0.882 42 H 0.146 0.854 43 H 0.149 0.851 44 H 0.138 0.862 45 H 0.100 0.900 46 H 0.062 0.938 47 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.689 7.470 -1.807 23.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.179 4.179 3 C 0.092 3.908 4 O -0.373 6.373 5 C -0.183 4.183 6 C -0.027 4.027 7 N -0.365 5.365 8 C 0.310 3.690 9 O -0.443 6.443 10 C -0.139 4.139 11 C 0.030 3.970 12 H 0.046 0.954 13 C -0.498 4.498 14 H 0.053 0.947 15 C -0.176 4.176 16 N -0.593 5.593 17 Si 0.747 3.253 18 H -0.182 1.182 19 H -0.227 1.227 20 H -0.180 1.180 21 C -0.063 4.063 22 C -0.138 4.138 23 C -0.137 4.137 24 C -0.158 4.158 25 C -0.141 4.141 26 C -0.182 4.182 27 C -0.012 4.012 28 H 0.090 0.910 29 H 0.087 0.913 30 H 0.083 0.917 31 H 0.091 0.909 32 H 0.081 0.919 33 H 0.246 0.754 34 H 0.141 0.859 35 H 0.109 0.891 36 H 0.107 0.893 37 H 0.097 0.903 38 H 0.119 0.881 39 H 0.118 0.882 40 H 0.068 0.932 41 H 0.136 0.864 42 H 0.163 0.837 43 H 0.167 0.833 44 H 0.156 0.844 45 H 0.118 0.882 46 H 0.081 0.919 47 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -20.332 7.139 -2.175 21.658 hybrid contribution 0.895 -0.543 -0.578 1.196 sum -19.437 6.595 -2.753 20.709 Atomic orbital electron populations 1.21777 0.92799 1.03165 1.03050 1.22054 0.98602 0.94302 1.02954 1.21938 0.90107 0.92143 0.86627 1.86559 1.27738 1.76720 1.46276 1.23491 0.99635 0.97856 0.97275 1.22567 0.83287 0.96618 1.00242 1.48634 1.05735 1.34380 1.47741 1.20907 0.80672 0.85530 0.81849 1.90725 1.44798 1.55111 1.53646 1.21497 0.97861 0.95621 0.98923 1.18107 0.92985 0.91253 0.94608 0.95370 1.20803 0.95086 1.07487 1.26454 0.94691 1.25604 0.99781 0.95828 0.96426 1.70032 1.15086 1.25302 1.48904 0.86215 0.78694 0.79822 0.80613 1.18177 1.22664 1.18001 1.20461 0.95730 0.93770 0.96334 1.21035 1.00988 0.98104 0.93697 1.21440 0.98580 0.93545 1.00122 1.21360 0.98482 1.00093 0.95829 1.21330 1.00087 0.97408 0.95323 1.21185 1.00995 0.95588 1.00384 1.21863 0.94729 0.90661 0.93909 0.90968 0.91300 0.91725 0.90873 0.91856 0.75424 0.85914 0.89092 0.89292 0.90269 0.88064 0.88248 0.93216 0.86438 0.83660 0.83311 0.84388 0.88193 0.91941 0.93394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.36 9.40 71.98 0.68 -0.68 16 2 C -0.14 -2.20 5.09 30.60 0.16 -2.05 16 3 C 0.13 2.58 0.95 -9.61 -0.01 2.57 16 4 O -0.56 -10.45 13.03 -148.98 -1.94 -12.39 16 5 C -0.14 -2.18 5.42 31.98 0.17 -2.01 16 6 C 0.09 2.05 6.68 86.85 0.58 2.63 16 7 N -0.63 -21.02 3.33 -811.82 -2.70 -23.72 16 8 C 0.52 22.74 7.60 87.66 0.67 23.41 16 9 O -0.57 -31.56 15.31 -3.03 -0.05 -31.61 16 10 C -0.10 -3.90 3.84 29.85 0.11 -3.78 16 11 C 0.05 2.41 1.24 -12.29 -0.02 2.39 16 12 H 0.03 1.50 5.26 -2.39 -0.01 1.49 16 13 C -0.46 -27.19 7.19 25.60 0.18 -27.01 16 14 H 0.03 2.25 8.05 -2.91 -0.02 2.23 16 15 C 0.02 1.24 5.47 84.66 0.46 1.71 16 16 N -0.95 -63.81 13.96 21.45 0.30 -63.51 16 17 Si 0.92 49.47 24.76 68.60 1.70 51.17 16 18 H -0.26 -13.00 7.11 99.48 0.71 -12.30 16 19 H -0.30 -16.21 7.11 99.48 0.71 -15.50 16 20 H -0.26 -13.24 5.95 99.48 0.59 -12.65 16 21 C -0.06 -2.64 4.30 -19.87 -0.09 -2.73 16 22 C -0.12 -4.45 8.94 22.27 0.20 -4.25 16 23 C -0.12 -3.58 10.05 22.27 0.22 -3.35 16 24 C -0.14 -3.94 10.05 22.27 0.22 -3.72 16 25 C -0.12 -3.96 10.05 22.27 0.22 -3.73 16 26 C -0.16 -6.47 8.15 22.27 0.18 -6.29 16 27 C 0.11 3.46 6.23 86.73 0.54 4.00 16 28 H 0.07 0.48 7.49 -2.39 -0.02 0.46 16 29 H 0.07 0.46 6.81 -2.39 -0.02 0.44 16 30 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 31 H 0.07 1.21 8.10 -2.39 -0.02 1.19 16 32 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 33 H 0.39 3.50 7.37 -74.06 -0.55 2.95 16 34 H 0.12 0.98 8.13 -2.39 -0.02 0.96 16 35 H 0.09 1.34 8.02 -2.38 -0.02 1.32 16 36 H 0.09 1.74 7.48 -2.39 -0.02 1.72 16 37 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 38 H 0.10 3.28 8.14 -2.39 -0.02 3.26 16 39 H 0.10 3.54 7.04 -2.39 -0.02 3.53 16 40 H 0.26 16.52 8.31 -92.70 -0.77 15.75 16 41 H 0.12 4.24 7.37 -2.91 -0.02 4.22 16 42 H 0.15 3.34 8.06 -2.91 -0.02 3.31 16 43 H 0.15 3.05 8.06 -2.91 -0.02 3.02 16 44 H 0.14 3.55 8.06 -2.91 -0.02 3.53 16 45 H 0.10 4.05 6.76 -2.91 -0.02 4.03 16 46 H 0.06 2.09 7.82 -2.38 -0.02 2.08 16 47 H 0.05 1.69 8.07 -2.39 -0.02 1.67 16 Total: -1.00 -85.12 370.03 2.11 -83.01 By element: Atomic # 1 Polarization: 19.62 SS G_CDS: 0.30 Total: 19.92 kcal Atomic # 6 Polarization: -27.38 SS G_CDS: 4.50 Total: -22.88 kcal Atomic # 7 Polarization: -84.83 SS G_CDS: -2.40 Total: -87.23 kcal Atomic # 8 Polarization: -42.01 SS G_CDS: -1.99 Total: -44.00 kcal Atomic # 14 Polarization: 49.47 SS G_CDS: 1.70 Total: 51.17 kcal Total: -85.12 2.11 -83.01 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356890064.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.454 kcal (2) G-P(sol) polarization free energy of solvation -85.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.012 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds