Wall clock time and date at job start Tue Mar 31 2020 12:19:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52998 * 109.47046 * 2 1 4 4 O 1.42899 * 110.88728 * 303.88070 * 3 2 1 5 5 C 1.55161 * 111.00256 * 67.80279 * 3 2 1 6 6 C 1.54334 * 103.01963 * 153.38108 * 5 3 2 7 7 N 1.47022 * 107.26669 * 338.14116 * 6 5 3 8 8 C 1.34780 * 125.64965 * 178.85034 * 7 6 5 9 9 O 1.21277 * 119.99930 * 179.68646 * 8 7 6 10 10 C 1.50698 * 119.99917 * 359.69153 * 8 7 6 11 11 C 1.52999 * 109.47088 * 179.97438 * 10 8 7 12 12 H 1.08990 * 109.47456 * 305.00214 * 11 10 8 13 13 C 1.50704 * 109.46819 * 65.00360 * 11 10 8 14 14 H 1.08000 * 119.99798 * 234.67447 * 13 11 10 15 15 C 1.37876 * 120.00073 * 54.67368 * 13 11 10 16 16 N 1.31510 * 120.00346 * 5.04761 * 15 13 11 17 17 Si 1.86808 * 119.99823 * 185.04185 * 15 13 11 18 18 H 1.48499 * 109.46682 * 90.00329 * 17 15 13 19 19 H 1.48496 * 109.46911 * 209.99969 * 17 15 13 20 20 H 1.48502 * 109.46984 * 330.00307 * 17 15 13 21 21 C 1.50697 * 109.47159 * 184.99748 * 11 10 8 22 22 C 1.38235 * 119.99942 * 151.42487 * 21 11 10 23 23 C 1.38238 * 120.00273 * 180.34875 * 22 21 11 24 24 C 1.38241 * 119.99843 * 359.90538 * 23 22 21 25 25 C 1.38238 * 119.99626 * 0.04858 * 24 23 22 26 26 C 1.38231 * 120.00678 * 0.02562 * 25 24 23 27 27 C 1.47427 * 108.70262 * 358.58399 * 7 6 5 28 28 H 1.09004 * 109.46713 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.46855 * 299.99757 * 1 2 3 30 30 H 1.08998 * 109.46817 * 59.99976 * 1 2 3 31 31 H 1.08998 * 109.47405 * 239.99744 * 2 1 3 32 32 H 1.08998 * 109.46817 * 120.00024 * 2 1 3 33 33 H 0.96699 * 114.00039 * 56.11857 * 4 3 2 34 34 H 1.09004 * 110.72113 * 271.93846 * 5 3 2 35 35 H 1.09000 * 110.72150 * 35.03720 * 5 3 2 36 36 H 1.09002 * 109.99377 * 218.66809 * 6 5 3 37 37 H 1.09001 * 109.78108 * 97.49372 * 6 5 3 38 38 H 1.09004 * 109.47289 * 59.99580 * 10 8 7 39 39 H 1.08999 * 109.47341 * 300.00221 * 10 8 7 40 40 H 0.96997 * 120.00490 * 180.02562 * 16 15 13 41 41 H 1.07995 * 120.00222 * 0.28040 * 22 21 11 42 42 H 1.07994 * 120.00588 * 179.97438 * 23 22 21 43 43 H 1.07997 * 120.00141 * 180.02562 * 24 23 22 44 44 H 1.08004 * 119.99871 * 179.97438 * 25 24 23 45 45 H 1.07996 * 120.00748 * 179.97438 * 26 25 24 46 46 H 1.09001 * 110.36317 * 143.19245 * 27 7 6 47 47 H 1.08994 * 110.36795 * 265.52055 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 1.5082 2.1709 -1.1084 5 6 1.7095 2.1492 1.3412 6 6 2.8134 3.2222 1.4501 7 7 3.9312 2.7861 0.6005 8 6 5.0811 3.4620 0.4071 9 8 5.9408 3.0022 -0.3143 10 6 5.2987 4.7890 1.0874 11 6 6.6734 5.3397 0.7032 12 1 7.4394 4.6006 0.9374 13 6 6.6996 5.6397 -0.7734 14 1 7.4661 5.2066 -1.3989 15 6 5.7450 6.4671 -1.3258 16 7 4.8723 7.0734 -0.5510 17 14 5.6914 6.7272 -3.1749 18 1 4.8070 5.7068 -3.7927 19 1 5.1631 8.0835 -3.4689 20 1 7.0616 6.5979 -3.7328 21 6 6.9422 6.6043 1.4775 22 6 8.2415 6.9662 1.7806 23 6 8.4878 8.1225 2.4971 24 6 7.4348 8.9180 2.9088 25 6 6.1356 8.5565 2.6048 26 6 5.8892 7.3995 1.8897 27 6 3.5886 1.4839 0.0001 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 0.5421 2.1732 -1.1504 34 1 0.7227 2.6105 1.3010 35 1 1.7719 1.4472 2.1727 36 1 3.1465 3.3106 2.4843 37 1 2.4322 4.1807 1.0980 38 1 5.2501 4.6555 2.1682 39 1 4.5253 5.4897 0.7729 40 1 4.2005 7.6552 -0.9396 41 1 9.0642 6.3450 1.4586 42 1 9.5027 8.4050 2.7342 43 1 7.6271 9.8215 3.4682 44 1 5.3128 9.1777 2.9268 45 1 4.8742 7.1169 1.6526 46 1 3.9697 1.4243 -1.0194 47 1 3.9898 0.6703 0.6042 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000356890067.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:19:03 Heat of formation + Delta-G solvation = -59.128801 kcal Electronic energy + Delta-G solvation = -27520.928509 eV Core-core repulsion = 23861.444771 eV Total energy + Delta-G solvation = -3659.483737 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -39.90822 -38.46572 -37.63795 -35.16038 -34.13010 -32.92354 -31.03450 -30.02979 -29.76386 -29.09246 -27.92594 -25.77490 -23.63166 -22.83995 -22.22820 -21.31170 -20.26846 -19.72851 -18.43962 -16.97339 -16.53442 -16.03049 -15.59136 -15.54512 -15.02346 -14.80346 -14.46819 -14.05356 -14.01631 -13.74977 -13.50554 -13.15025 -12.77263 -12.58038 -12.36465 -12.25140 -12.13585 -11.99743 -11.84057 -11.54469 -11.43364 -11.39232 -11.31599 -11.07553 -10.83429 -10.73606 -10.60104 -10.35826 -10.11988 -9.93718 -9.87685 -9.24080 -9.12250 -8.72962 -8.35070 -8.00165 -7.76799 -7.39719 -5.91558 -4.00838 2.53383 2.61992 3.37832 3.43215 3.48297 3.59892 3.76168 4.04075 4.40801 4.50099 4.59731 4.65356 4.93217 5.01387 5.11681 5.15883 5.31636 5.38967 5.51951 5.65844 5.68960 5.71896 5.79559 5.84426 5.85822 5.93185 5.97450 6.00254 6.04804 6.11733 6.19304 6.42719 6.49154 6.63566 6.73553 6.81744 6.89629 7.18188 7.22377 7.30880 7.52190 7.58777 7.64055 7.73477 7.99416 8.12421 8.22281 8.29457 8.40702 8.95445 9.23684 9.62450 11.02782 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.015123 B = 0.004119 C = 0.003671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1851.057477 B = 6795.363056 C = 7625.051893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.142 4.142 3 C 0.116 3.884 4 O -0.541 6.541 5 C -0.155 4.155 6 C 0.111 3.889 7 N -0.629 5.629 8 C 0.541 3.459 9 O -0.526 6.526 10 C -0.131 4.131 11 C 0.087 3.913 12 H 0.037 0.963 13 C -0.470 4.470 14 H 0.059 0.941 15 C 0.061 3.939 16 N -0.890 5.890 17 Si 0.891 3.109 18 H -0.281 1.281 19 H -0.288 1.288 20 H -0.275 1.275 21 C -0.026 4.026 22 C -0.132 4.132 23 C -0.142 4.142 24 C -0.155 4.155 25 C -0.143 4.143 26 C -0.068 4.068 27 C 0.121 3.879 28 H 0.059 0.941 29 H 0.058 0.942 30 H 0.056 0.944 31 H 0.073 0.927 32 H 0.075 0.925 33 H 0.371 0.629 34 H 0.081 0.919 35 H 0.081 0.919 36 H 0.063 0.937 37 H 0.070 0.930 38 H 0.050 0.950 39 H 0.132 0.868 40 H 0.260 0.740 41 H 0.105 0.895 42 H 0.101 0.899 43 H 0.099 0.901 44 H 0.101 0.899 45 H 0.140 0.860 46 H 0.081 0.919 47 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.094 -8.988 7.165 15.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.180 4.180 3 C 0.074 3.926 4 O -0.346 6.346 5 C -0.193 4.193 6 C -0.013 4.013 7 N -0.367 5.367 8 C 0.333 3.667 9 O -0.400 6.400 10 C -0.171 4.171 11 C 0.068 3.932 12 H 0.055 0.945 13 C -0.508 4.508 14 H 0.077 0.923 15 C -0.138 4.138 16 N -0.529 5.529 17 Si 0.719 3.281 18 H -0.208 1.208 19 H -0.215 1.215 20 H -0.200 1.200 21 C -0.027 4.027 22 C -0.150 4.150 23 C -0.160 4.160 24 C -0.173 4.173 25 C -0.162 4.162 26 C -0.087 4.087 27 C -0.002 4.002 28 H 0.078 0.922 29 H 0.077 0.923 30 H 0.075 0.925 31 H 0.091 0.909 32 H 0.094 0.906 33 H 0.218 0.782 34 H 0.100 0.900 35 H 0.099 0.901 36 H 0.082 0.918 37 H 0.088 0.912 38 H 0.069 0.931 39 H 0.150 0.850 40 H 0.070 0.930 41 H 0.123 0.877 42 H 0.119 0.881 43 H 0.117 0.883 44 H 0.119 0.881 45 H 0.157 0.843 46 H 0.100 0.900 47 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -9.016 -8.943 6.589 14.306 hybrid contribution -0.828 0.327 -1.023 1.356 sum -9.844 -8.615 5.566 14.216 Atomic orbital electron populations 1.21791 0.95407 1.02260 1.01943 1.22033 0.96520 0.96121 1.03307 1.22346 0.94190 0.90112 0.85928 1.86690 1.25181 1.75309 1.47465 1.23312 0.99280 0.98663 0.98049 1.21812 0.86712 0.97983 0.94773 1.48603 1.17699 1.21169 1.49211 1.20912 0.78922 0.85931 0.80942 1.90613 1.42717 1.68870 1.37805 1.21905 1.05639 0.93040 0.96521 1.17651 0.91474 0.89473 0.94639 0.94483 1.20971 1.12137 1.26314 0.91342 0.92303 1.24865 0.95889 0.95248 0.97827 1.69666 1.18835 1.30639 1.33787 0.86584 0.78351 0.76978 0.86144 1.20769 1.21450 1.20024 1.20340 0.91979 0.98724 0.91607 1.20897 0.96840 0.97267 1.00004 1.20794 0.97581 0.96235 1.01395 1.20761 0.93470 0.99658 1.03391 1.21043 0.95679 0.98291 1.01157 1.21368 1.00883 0.93211 0.93208 1.21983 0.91061 0.87042 1.00124 0.92209 0.92301 0.92472 0.90853 0.90643 0.78154 0.90048 0.90073 0.91835 0.91202 0.93129 0.85038 0.92996 0.87662 0.88112 0.88324 0.88113 0.84280 0.90036 0.90997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.05 9.41 37.16 0.35 -0.70 16 2 C -0.14 -1.23 5.25 -26.73 -0.14 -1.37 16 3 C 0.12 1.38 1.00 -88.47 -0.09 1.29 16 4 O -0.54 -7.40 13.16 -35.23 -0.46 -7.86 16 5 C -0.15 -1.61 5.39 -24.89 -0.13 -1.75 16 6 C 0.11 1.58 6.49 -3.06 -0.02 1.56 16 7 N -0.63 -11.52 3.33 -170.51 -0.57 -12.09 16 8 C 0.54 12.33 7.60 -10.98 -0.08 12.25 16 9 O -0.53 -13.85 15.24 5.56 0.08 -13.76 16 10 C -0.13 -2.94 3.27 -27.88 -0.09 -3.04 16 11 C 0.09 2.16 1.97 -92.92 -0.18 1.98 16 12 H 0.04 0.94 7.91 -51.93 -0.41 0.53 16 13 C -0.47 -13.06 7.27 -34.44 -0.25 -13.31 16 14 H 0.06 1.72 7.82 -52.49 -0.41 1.31 16 15 C 0.06 1.67 5.12 -17.82 -0.09 1.58 16 16 N -0.89 -23.41 7.98 55.43 0.44 -22.97 16 17 Si 0.89 22.36 29.54 -169.99 -5.02 17.34 16 18 H -0.28 -7.22 7.11 56.52 0.40 -6.82 16 19 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 20 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 21 C -0.03 -0.61 4.69 -104.62 -0.49 -1.10 16 22 C -0.13 -2.88 9.71 -39.58 -0.38 -3.27 16 23 C -0.14 -2.78 10.05 -39.58 -0.40 -3.18 16 24 C -0.15 -2.96 10.05 -39.58 -0.40 -3.36 16 25 C -0.14 -2.90 10.05 -39.58 -0.40 -3.29 16 26 C -0.07 -1.53 7.46 -39.58 -0.30 -1.83 16 27 C 0.12 1.90 6.11 -2.53 -0.02 1.89 16 28 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 29 H 0.06 0.36 7.56 -51.93 -0.39 -0.03 16 30 H 0.06 0.37 6.75 -51.93 -0.35 0.02 16 31 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 32 H 0.07 0.58 8.08 -51.93 -0.42 0.16 16 33 H 0.37 3.44 7.24 45.56 0.33 3.77 16 34 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.08 0.70 7.99 -51.93 -0.41 0.28 16 36 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 37 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 38 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 39 H 0.13 3.14 4.71 -51.93 -0.24 2.90 16 40 H 0.26 6.70 8.31 -40.82 -0.34 6.36 16 41 H 0.11 2.19 8.06 -52.49 -0.42 1.76 16 42 H 0.10 1.69 8.06 -52.49 -0.42 1.27 16 43 H 0.10 1.60 8.06 -52.49 -0.42 1.18 16 44 H 0.10 1.79 8.06 -52.48 -0.42 1.37 16 45 H 0.14 3.20 5.17 -52.49 -0.27 2.93 16 46 H 0.08 1.50 8.04 -51.93 -0.42 1.08 16 47 H 0.07 0.99 8.04 -51.93 -0.42 0.57 16 LS Contribution 370.12 15.07 5.58 5.58 Total: -1.00 -32.10 370.12 -9.84 -41.94 By element: Atomic # 1 Polarization: 14.26 SS G_CDS: -6.78 Total: 7.47 kcal Atomic # 6 Polarization: -12.54 SS G_CDS: -3.11 Total: -15.65 kcal Atomic # 7 Polarization: -34.94 SS G_CDS: -0.12 Total: -35.06 kcal Atomic # 8 Polarization: -21.25 SS G_CDS: -0.38 Total: -21.63 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -5.02 Total: 17.34 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -32.10 -9.84 -41.94 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356890067.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.188 kcal (2) G-P(sol) polarization free energy of solvation -32.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.941 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds