Wall clock time and date at job start Tue Mar 31 2020 12:19:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52998 * 109.47046 * 2 1 4 4 O 1.42899 * 110.88728 * 303.88070 * 3 2 1 5 5 C 1.55161 * 111.00256 * 67.80279 * 3 2 1 6 6 C 1.54334 * 103.01963 * 153.38108 * 5 3 2 7 7 N 1.47022 * 107.26669 * 338.14116 * 6 5 3 8 8 C 1.34780 * 125.64965 * 178.85034 * 7 6 5 9 9 O 1.21277 * 119.99930 * 179.68646 * 8 7 6 10 10 C 1.50698 * 119.99917 * 359.69153 * 8 7 6 11 11 C 1.52999 * 109.47088 * 179.97438 * 10 8 7 12 12 H 1.08990 * 109.47456 * 305.00214 * 11 10 8 13 13 C 1.50704 * 109.46819 * 65.00360 * 11 10 8 14 14 H 1.08000 * 119.99798 * 234.67447 * 13 11 10 15 15 C 1.37876 * 120.00073 * 54.67368 * 13 11 10 16 16 N 1.31510 * 120.00346 * 5.04761 * 15 13 11 17 17 Si 1.86808 * 119.99823 * 185.04185 * 15 13 11 18 18 H 1.48499 * 109.46682 * 90.00329 * 17 15 13 19 19 H 1.48496 * 109.46911 * 209.99969 * 17 15 13 20 20 H 1.48502 * 109.46984 * 330.00307 * 17 15 13 21 21 C 1.50697 * 109.47159 * 184.99748 * 11 10 8 22 22 C 1.38235 * 119.99942 * 151.42487 * 21 11 10 23 23 C 1.38238 * 120.00273 * 180.34875 * 22 21 11 24 24 C 1.38241 * 119.99843 * 359.90538 * 23 22 21 25 25 C 1.38238 * 119.99626 * 0.04858 * 24 23 22 26 26 C 1.38231 * 120.00678 * 0.02562 * 25 24 23 27 27 C 1.47427 * 108.70262 * 358.58399 * 7 6 5 28 28 H 1.09004 * 109.46713 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.46855 * 299.99757 * 1 2 3 30 30 H 1.08998 * 109.46817 * 59.99976 * 1 2 3 31 31 H 1.08998 * 109.47405 * 239.99744 * 2 1 3 32 32 H 1.08998 * 109.46817 * 120.00024 * 2 1 3 33 33 H 0.96699 * 114.00039 * 56.11857 * 4 3 2 34 34 H 1.09004 * 110.72113 * 271.93846 * 5 3 2 35 35 H 1.09000 * 110.72150 * 35.03720 * 5 3 2 36 36 H 1.09002 * 109.99377 * 218.66809 * 6 5 3 37 37 H 1.09001 * 109.78108 * 97.49372 * 6 5 3 38 38 H 1.09004 * 109.47289 * 59.99580 * 10 8 7 39 39 H 1.08999 * 109.47341 * 300.00221 * 10 8 7 40 40 H 0.96997 * 120.00490 * 180.02562 * 16 15 13 41 41 H 1.07995 * 120.00222 * 0.28040 * 22 21 11 42 42 H 1.07994 * 120.00588 * 179.97438 * 23 22 21 43 43 H 1.07997 * 120.00141 * 180.02562 * 24 23 22 44 44 H 1.08004 * 119.99871 * 179.97438 * 25 24 23 45 45 H 1.07996 * 120.00748 * 179.97438 * 26 25 24 46 46 H 1.09001 * 110.36317 * 143.19245 * 27 7 6 47 47 H 1.08994 * 110.36795 * 265.52055 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 1.5082 2.1709 -1.1084 5 6 1.7095 2.1492 1.3412 6 6 2.8134 3.2222 1.4501 7 7 3.9312 2.7861 0.6005 8 6 5.0811 3.4620 0.4071 9 8 5.9408 3.0022 -0.3143 10 6 5.2987 4.7890 1.0874 11 6 6.6734 5.3397 0.7032 12 1 7.4394 4.6006 0.9374 13 6 6.6996 5.6397 -0.7734 14 1 7.4661 5.2066 -1.3989 15 6 5.7450 6.4671 -1.3258 16 7 4.8723 7.0734 -0.5510 17 14 5.6914 6.7272 -3.1749 18 1 4.8070 5.7068 -3.7927 19 1 5.1631 8.0835 -3.4689 20 1 7.0616 6.5979 -3.7328 21 6 6.9422 6.6043 1.4775 22 6 8.2415 6.9662 1.7806 23 6 8.4878 8.1225 2.4971 24 6 7.4348 8.9180 2.9088 25 6 6.1356 8.5565 2.6048 26 6 5.8892 7.3995 1.8897 27 6 3.5886 1.4839 0.0001 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 0.5421 2.1732 -1.1504 34 1 0.7227 2.6105 1.3010 35 1 1.7719 1.4472 2.1727 36 1 3.1465 3.3106 2.4843 37 1 2.4322 4.1807 1.0980 38 1 5.2501 4.6555 2.1682 39 1 4.5253 5.4897 0.7729 40 1 4.2005 7.6552 -0.9396 41 1 9.0642 6.3450 1.4586 42 1 9.5027 8.4050 2.7342 43 1 7.6271 9.8215 3.4682 44 1 5.3128 9.1777 2.9268 45 1 4.8742 7.1169 1.6526 46 1 3.9697 1.4243 -1.0194 47 1 3.9898 0.6703 0.6042 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000356890067.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:19:01 Heat of formation + Delta-G solvation = -79.073111 kcal Electronic energy + Delta-G solvation = -27521.793359 eV Core-core repulsion = 23861.444771 eV Total energy + Delta-G solvation = -3660.348587 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.22160 -40.03545 -39.17981 -36.48794 -36.00251 -33.76982 -32.99025 -31.47134 -31.13626 -30.44257 -29.37705 -27.60406 -24.99809 -23.87101 -23.77625 -22.91474 -21.44790 -21.20629 -20.01545 -18.43913 -17.95364 -17.76569 -17.12912 -16.95447 -16.60072 -16.26635 -15.74355 -15.48427 -15.39467 -15.04226 -14.96244 -14.77204 -14.06277 -13.96142 -13.77384 -13.65240 -13.32744 -13.28777 -13.21708 -13.09048 -12.86315 -12.79985 -12.71192 -12.68375 -12.27693 -12.20016 -11.91302 -11.82660 -11.71738 -11.54039 -11.09356 -11.07300 -10.82483 -10.64069 -10.31299 -9.49547 -9.40245 -9.12616 -7.97232 -6.12840 0.88475 0.99735 1.31511 1.35310 1.42589 1.95151 2.21694 2.42011 3.08386 3.17300 3.36880 3.49118 3.66750 3.79302 4.13948 4.24940 4.29761 4.32871 4.41586 4.46525 4.50936 4.57721 4.63431 4.66633 4.71639 4.76670 4.80740 4.87985 4.91231 4.93787 5.06573 5.12003 5.13468 5.16418 5.27311 5.31648 5.44593 5.52950 5.56449 5.61532 5.67403 5.86815 5.94221 6.08867 6.34066 6.41479 6.57268 6.69214 6.81328 6.86906 7.48386 7.51407 8.91829 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.015123 B = 0.004119 C = 0.003671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1851.057477 B = 6795.363056 C = 7625.051893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.134 4.134 3 C 0.121 3.879 4 O -0.572 6.572 5 C -0.139 4.139 6 C 0.099 3.901 7 N -0.629 5.629 8 C 0.530 3.470 9 O -0.578 6.578 10 C -0.117 4.117 11 C 0.087 3.913 12 H 0.013 0.987 13 C -0.492 4.492 14 H 0.026 0.974 15 C 0.035 3.965 16 N -0.883 5.883 17 Si 0.927 3.073 18 H -0.292 1.292 19 H -0.273 1.273 20 H -0.282 1.282 21 C -0.051 4.051 22 C -0.152 4.152 23 C -0.139 4.139 24 C -0.147 4.147 25 C -0.146 4.146 26 C -0.081 4.081 27 C 0.109 3.891 28 H 0.069 0.931 29 H 0.071 0.929 30 H 0.057 0.943 31 H 0.062 0.938 32 H 0.091 0.909 33 H 0.389 0.611 34 H 0.107 0.893 35 H 0.111 0.889 36 H 0.081 0.919 37 H 0.055 0.945 38 H 0.072 0.928 39 H 0.121 0.879 40 H 0.261 0.739 41 H 0.102 0.898 42 H 0.133 0.867 43 H 0.138 0.862 44 H 0.128 0.872 45 H 0.128 0.872 46 H 0.042 0.958 47 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.223 -8.226 9.425 17.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.172 4.172 3 C 0.080 3.920 4 O -0.382 6.382 5 C -0.177 4.177 6 C -0.024 4.024 7 N -0.364 5.364 8 C 0.322 3.678 9 O -0.457 6.457 10 C -0.157 4.157 11 C 0.068 3.932 12 H 0.032 0.968 13 C -0.530 4.530 14 H 0.044 0.956 15 C -0.164 4.164 16 N -0.522 5.522 17 Si 0.755 3.245 18 H -0.219 1.219 19 H -0.198 1.198 20 H -0.207 1.207 21 C -0.052 4.052 22 C -0.170 4.170 23 C -0.157 4.157 24 C -0.165 4.165 25 C -0.164 4.164 26 C -0.099 4.099 27 C -0.014 4.014 28 H 0.088 0.912 29 H 0.090 0.910 30 H 0.076 0.924 31 H 0.081 0.919 32 H 0.110 0.890 33 H 0.240 0.760 34 H 0.125 0.875 35 H 0.129 0.871 36 H 0.100 0.900 37 H 0.073 0.927 38 H 0.090 0.910 39 H 0.138 0.862 40 H 0.071 0.929 41 H 0.120 0.880 42 H 0.151 0.849 43 H 0.156 0.844 44 H 0.146 0.854 45 H 0.146 0.854 46 H 0.060 0.940 47 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -11.216 -8.180 8.883 16.481 hybrid contribution -0.145 0.088 -1.685 1.694 sum -11.361 -8.092 7.198 15.696 Atomic orbital electron populations 1.21788 0.93403 1.03221 1.02665 1.21984 0.98110 0.93456 1.03657 1.22351 0.91069 0.92288 0.86276 1.86637 1.27107 1.75935 1.48491 1.23330 0.98749 0.97739 0.97852 1.22151 0.86621 0.98863 0.94721 1.48592 1.17203 1.21674 1.48939 1.21002 0.79868 0.86329 0.80634 1.90575 1.44906 1.70150 1.40063 1.21685 1.03686 0.92662 0.97639 1.17539 0.92107 0.90060 0.93466 0.96834 1.20939 1.12099 1.27052 0.92945 0.95609 1.25209 0.95908 0.95328 0.99974 1.69751 1.18393 1.30151 1.33920 0.86036 0.77640 0.77160 0.83637 1.21861 1.19776 1.20727 1.20266 0.93271 0.98468 0.93145 1.21070 0.96225 0.98649 1.01070 1.21158 0.99638 0.94965 0.99913 1.21211 0.92600 1.00419 1.02277 1.21364 0.97357 0.97488 1.00163 1.21302 0.99949 0.94312 0.94375 1.22281 0.94622 0.86364 0.98145 0.91159 0.90956 0.92400 0.91909 0.89022 0.75976 0.87490 0.87069 0.90032 0.92693 0.90990 0.86160 0.92877 0.87996 0.84893 0.84429 0.85437 0.85390 0.93956 0.88905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.54 9.41 71.98 0.68 -0.86 16 2 C -0.13 -2.00 5.25 30.60 0.16 -1.84 16 3 C 0.12 2.71 1.00 -9.40 -0.01 2.70 16 4 O -0.57 -15.29 13.16 -148.98 -1.96 -17.25 16 5 C -0.14 -2.46 5.39 31.79 0.17 -2.29 16 6 C 0.10 2.70 6.49 86.73 0.56 3.27 16 7 N -0.63 -23.58 3.33 -811.77 -2.70 -26.28 16 8 C 0.53 25.44 7.60 87.66 0.67 26.11 16 9 O -0.58 -32.74 15.24 -3.02 -0.05 -32.79 16 10 C -0.12 -5.46 3.27 29.85 0.10 -5.36 16 11 C 0.09 4.59 1.97 -12.29 -0.02 4.57 16 12 H 0.01 0.73 7.91 -2.39 -0.02 0.71 16 13 C -0.49 -28.97 7.27 25.60 0.19 -28.79 16 14 H 0.03 1.63 7.82 -2.91 -0.02 1.60 16 15 C 0.04 1.99 5.12 84.65 0.43 2.42 16 16 N -0.88 -47.15 7.98 21.45 0.17 -46.98 16 17 Si 0.93 47.00 29.54 68.60 2.03 49.03 16 18 H -0.29 -15.19 7.11 99.48 0.71 -14.48 16 19 H -0.27 -13.05 7.11 99.48 0.71 -12.34 16 20 H -0.28 -14.48 7.11 99.48 0.71 -13.77 16 21 C -0.05 -2.44 4.69 -19.86 -0.09 -2.54 16 22 C -0.15 -6.68 9.71 22.27 0.22 -6.46 16 23 C -0.14 -5.12 10.05 22.27 0.22 -4.89 16 24 C -0.15 -5.10 10.05 22.27 0.22 -4.88 16 25 C -0.15 -5.51 10.05 22.27 0.22 -5.29 16 26 C -0.08 -3.60 7.46 22.27 0.17 -3.43 16 27 C 0.11 3.48 6.11 86.85 0.53 4.01 16 28 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 29 H 0.07 0.56 7.56 -2.39 -0.02 0.54 16 30 H 0.06 0.58 6.75 -2.39 -0.02 0.56 16 31 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 32 H 0.09 1.10 8.08 -2.39 -0.02 1.08 16 33 H 0.39 6.59 7.24 -74.06 -0.54 6.05 16 34 H 0.11 1.42 8.14 -2.39 -0.02 1.40 16 35 H 0.11 1.37 7.99 -2.39 -0.02 1.35 16 36 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 37 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 38 H 0.07 2.95 8.14 -2.38 -0.02 2.93 16 39 H 0.12 5.93 4.71 -2.39 -0.01 5.92 16 40 H 0.26 13.47 8.31 -92.71 -0.77 12.70 16 41 H 0.10 4.40 8.06 -2.91 -0.02 4.38 16 42 H 0.13 3.99 8.06 -2.91 -0.02 3.97 16 43 H 0.14 3.72 8.06 -2.91 -0.02 3.70 16 44 H 0.13 4.09 8.06 -2.91 -0.02 4.06 16 45 H 0.13 5.90 5.17 -2.91 -0.02 5.89 16 46 H 0.04 1.67 8.04 -2.39 -0.02 1.65 16 47 H 0.09 2.53 8.04 -2.39 -0.02 2.51 16 Total: -1.00 -74.52 370.12 2.33 -72.19 By element: Atomic # 1 Polarization: 25.20 SS G_CDS: 0.42 Total: 25.63 kcal Atomic # 6 Polarization: -27.97 SS G_CDS: 4.41 Total: -23.56 kcal Atomic # 7 Polarization: -70.73 SS G_CDS: -2.53 Total: -73.25 kcal Atomic # 8 Polarization: -48.03 SS G_CDS: -2.01 Total: -50.04 kcal Atomic # 14 Polarization: 47.00 SS G_CDS: 2.03 Total: 49.03 kcal Total: -74.52 2.33 -72.19 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356890067.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.879 kcal (2) G-P(sol) polarization free energy of solvation -74.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.194 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds