Wall clock time and date at job start Tue Mar 31 2020 12:19:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46955 * 2 1 4 4 O 1.42901 * 110.88847 * 67.42408 * 3 2 1 5 5 C 1.55157 * 111.00450 * 303.54840 * 3 2 1 6 6 C 1.54327 * 102.94408 * 206.42470 * 5 3 2 7 7 N 1.47025 * 107.27050 * 22.19182 * 6 5 3 8 8 C 1.34773 * 125.64855 * 181.02643 * 7 6 5 9 9 O 1.21285 * 119.99790 * 180.02562 * 8 7 6 10 10 C 1.50697 * 120.00115 * 0.02562 * 8 7 6 11 11 C 1.53003 * 109.47069 * 180.02562 * 10 8 7 12 12 H 1.08999 * 109.46915 * 55.00210 * 11 10 8 13 13 C 1.50694 * 109.47152 * 295.00149 * 11 10 8 14 14 H 1.08001 * 120.00347 * 334.72115 * 13 11 10 15 15 C 1.37875 * 119.99984 * 154.72565 * 13 11 10 16 16 N 1.31517 * 119.99833 * 184.85431 * 15 13 11 17 17 Si 1.86796 * 119.99962 * 4.85386 * 15 13 11 18 18 H 1.48497 * 109.47368 * 84.64199 * 17 15 13 19 19 H 1.48509 * 109.46917 * 204.63797 * 17 15 13 20 20 H 1.48496 * 109.46950 * 324.63824 * 17 15 13 21 21 C 1.50702 * 109.46890 * 175.00341 * 11 10 8 22 22 C 1.38242 * 119.99789 * 235.53782 * 21 11 10 23 23 C 1.38235 * 120.00016 * 179.97438 * 22 21 11 24 24 C 1.38229 * 119.99911 * 0.08627 * 23 22 21 25 25 C 1.38241 * 120.00395 * 359.86578 * 24 23 22 26 26 C 1.38233 * 120.00344 * 55.51029 * 21 11 10 27 27 C 1.47426 * 108.70251 * 1.28734 * 7 6 5 28 28 H 1.09002 * 109.46918 * 300.00137 * 1 2 3 29 29 H 1.09001 * 109.47055 * 60.00124 * 1 2 3 30 30 H 1.08994 * 109.46742 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.46812 * 240.00358 * 2 1 3 32 32 H 1.09001 * 109.47055 * 119.99876 * 2 1 3 33 33 H 0.96695 * 114.00089 * 297.57785 * 4 3 2 34 34 H 1.08999 * 110.72813 * 88.06000 * 5 3 2 35 35 H 1.09002 * 110.87392 * 324.85510 * 5 3 2 36 36 H 1.08998 * 109.88240 * 262.77374 * 6 5 3 37 37 H 1.08998 * 109.88256 * 141.60587 * 6 5 3 38 38 H 1.09001 * 109.47166 * 60.00026 * 10 8 7 39 39 H 1.08996 * 109.47195 * 300.00307 * 10 8 7 40 40 H 0.97003 * 119.99975 * 180.02562 * 16 15 13 41 41 H 1.08002 * 119.99883 * 359.69705 * 22 21 11 42 42 H 1.07999 * 119.99882 * 179.97438 * 23 22 21 43 43 H 1.07996 * 120.00151 * 179.97438 * 24 23 22 44 44 H 1.07998 * 120.00043 * 180.02562 * 25 24 23 45 45 H 1.07999 * 119.99991 * 0.02562 * 26 21 11 46 46 H 1.08994 * 110.37024 * 94.48320 * 27 7 6 47 47 H 1.09002 * 110.37142 * 216.80949 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 1.7266 2.0937 1.2328 5 6 1.4707 2.2337 -1.2072 6 6 2.5404 3.3206 -1.4437 7 7 3.7952 2.8342 -0.8515 8 6 4.9651 3.5031 -0.8309 9 8 5.9408 3.0024 -0.3130 10 6 5.0608 4.8730 -1.4515 11 6 6.4864 5.4058 -1.2936 12 1 7.1911 4.6882 -1.7137 13 6 6.7878 5.6087 0.1689 14 1 5.9825 5.7835 0.8670 15 6 8.0916 5.5711 0.6157 16 7 8.3481 5.6525 1.9030 17 14 9.4936 5.4047 -0.6074 18 1 9.8543 6.7460 -1.1326 19 1 10.6718 4.8048 0.0689 20 1 9.0694 4.5308 -1.7306 21 6 6.6147 6.7201 -2.0199 22 6 7.5925 6.8849 -2.9831 23 6 7.7099 8.0902 -3.6497 24 6 6.8506 9.1312 -3.3520 25 6 5.8721 8.9661 -2.3895 26 6 5.7542 7.7605 -1.7235 27 6 3.5633 1.4912 -0.2895 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3632 -1.0276 0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 0.7786 2.1724 1.4061 34 1 0.5113 2.6853 -0.9546 35 1 1.3742 1.5908 -2.0822 36 1 2.2381 4.2496 -0.9604 37 1 2.6738 3.4829 -2.5132 38 1 4.3635 5.5469 -0.9538 39 1 4.8120 4.8102 -2.5108 40 1 9.2654 5.6265 2.2174 41 1 8.2676 6.0734 -3.2116 42 1 8.4741 8.2190 -4.4019 43 1 6.9426 10.0730 -3.8724 44 1 5.2006 9.7794 -2.1571 45 1 4.9903 7.6318 -0.9710 46 1 3.8389 0.7243 -1.0133 47 1 4.1287 1.3633 0.6336 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000356890069.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:19:09 Heat of formation + Delta-G solvation = -60.130088 kcal Electronic energy + Delta-G solvation = -27134.535146 eV Core-core repulsion = 23475.007989 eV Total energy + Delta-G solvation = -3659.527156 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -40.06463 -38.77580 -37.90112 -35.25625 -34.05378 -33.11216 -31.63875 -30.25349 -30.07634 -29.41060 -28.26135 -25.87528 -23.63326 -23.04689 -22.35322 -21.82248 -20.34769 -19.78272 -18.52265 -17.01859 -16.95233 -16.55572 -15.93139 -15.72593 -15.21196 -14.82712 -14.41322 -14.36576 -14.10605 -13.99962 -13.78255 -13.12757 -12.91529 -12.77596 -12.74215 -12.50974 -12.39640 -12.21147 -12.08950 -11.93007 -11.78664 -11.70601 -11.40688 -11.25282 -11.06586 -10.69107 -10.66126 -10.54717 -10.32097 -10.04299 -9.82655 -9.55274 -9.13472 -8.92845 -8.42175 -8.20176 -8.17266 -7.77931 -5.93446 -3.89331 2.08993 2.15605 3.38866 3.44418 3.47598 3.48653 3.50982 3.93037 4.30082 4.49355 4.52857 4.56477 4.58987 4.88105 5.00531 5.05778 5.24250 5.32744 5.43833 5.51833 5.52389 5.55051 5.56591 5.64640 5.67696 5.69726 5.71765 5.83250 5.90287 5.95004 5.97520 6.03798 6.04363 6.13458 6.23321 6.34116 6.54567 6.68145 6.75081 6.84849 7.07426 7.14621 7.26916 7.55560 7.61841 7.73475 7.84459 8.04814 8.57960 9.01418 9.06698 9.69445 11.19842 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.015769 B = 0.003832 C = 0.003355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1775.186456 B = 7304.881128 C = 8343.702759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.142 4.142 3 C 0.117 3.883 4 O -0.540 6.540 5 C -0.155 4.155 6 C 0.108 3.892 7 N -0.630 5.630 8 C 0.531 3.469 9 O -0.497 6.497 10 C -0.107 4.107 11 C 0.048 3.952 12 H 0.054 0.946 13 C -0.481 4.481 14 H 0.072 0.928 15 C 0.082 3.918 16 N -0.898 5.898 17 Si 0.868 3.132 18 H -0.272 1.272 19 H -0.293 1.293 20 H -0.263 1.263 21 C -0.037 4.037 22 C -0.142 4.142 23 C -0.122 4.122 24 C -0.151 4.151 25 C -0.124 4.124 26 C -0.107 4.107 27 C 0.121 3.879 28 H 0.054 0.946 29 H 0.058 0.942 30 H 0.058 0.942 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.372 0.628 34 H 0.082 0.918 35 H 0.083 0.917 36 H 0.067 0.933 37 H 0.064 0.936 38 H 0.084 0.916 39 H 0.068 0.932 40 H 0.262 0.738 41 H 0.109 0.891 42 H 0.109 0.891 43 H 0.108 0.892 44 H 0.111 0.889 45 H 0.118 0.882 46 H 0.075 0.925 47 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.817 -5.925 -9.916 20.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.180 4.180 3 C 0.075 3.925 4 O -0.346 6.346 5 C -0.194 4.194 6 C -0.015 4.015 7 N -0.369 5.369 8 C 0.320 3.680 9 O -0.368 6.368 10 C -0.148 4.148 11 C 0.028 3.972 12 H 0.072 0.928 13 C -0.518 4.518 14 H 0.090 0.910 15 C -0.120 4.120 16 N -0.535 5.535 17 Si 0.696 3.304 18 H -0.198 1.198 19 H -0.219 1.219 20 H -0.188 1.188 21 C -0.038 4.038 22 C -0.160 4.160 23 C -0.140 4.140 24 C -0.169 4.169 25 C -0.142 4.142 26 C -0.125 4.125 27 C -0.002 4.002 28 H 0.074 0.926 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.094 0.906 32 H 0.093 0.907 33 H 0.219 0.781 34 H 0.101 0.899 35 H 0.101 0.899 36 H 0.085 0.915 37 H 0.083 0.917 38 H 0.102 0.898 39 H 0.086 0.914 40 H 0.071 0.929 41 H 0.127 0.873 42 H 0.127 0.873 43 H 0.126 0.874 44 H 0.129 0.871 45 H 0.136 0.864 46 H 0.093 0.907 47 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -15.340 -6.101 -9.431 19.013 hybrid contribution 0.203 0.025 -0.511 0.550 sum -15.137 -6.077 -9.942 19.103 Atomic orbital electron populations 1.21801 0.95350 1.02178 1.01903 1.22036 0.96493 0.96022 1.03480 1.22370 0.95217 0.90893 0.84006 1.86672 1.28750 1.80752 1.38419 1.23330 0.98673 0.98156 0.99199 1.21847 0.84155 0.97468 0.98050 1.48584 1.10182 1.17885 1.60235 1.20551 0.80679 0.87210 0.79535 1.90759 1.35247 1.68244 1.42534 1.21576 1.01344 0.92802 0.99031 1.18284 0.92236 0.89431 0.97227 0.92789 1.20610 0.93816 1.48317 0.89037 0.91034 1.24870 0.98534 0.93892 0.94678 1.69892 1.19808 1.50647 1.13180 0.87053 0.82370 0.78762 0.82184 1.19795 1.21944 1.18787 1.20780 0.92874 0.98693 0.91457 1.21089 0.99660 0.97564 0.97701 1.20958 0.99124 0.93809 1.00128 1.20850 0.97560 0.98400 1.00097 1.21045 0.98669 0.97311 0.97219 1.20933 0.99997 0.92644 0.98928 1.22077 0.92799 0.85747 0.99578 0.92646 0.92291 0.92310 0.90636 0.90658 0.78054 0.89937 0.89854 0.91474 0.91750 0.89815 0.91388 0.92861 0.87253 0.87318 0.87361 0.87134 0.86368 0.90746 0.89666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.91 9.48 37.16 0.35 -0.56 16 2 C -0.14 -1.13 5.34 -26.73 -0.14 -1.27 16 3 C 0.12 1.24 0.98 -88.35 -0.09 1.15 16 4 O -0.54 -6.58 13.18 -35.23 -0.46 -7.05 16 5 C -0.16 -1.35 4.84 -24.89 -0.12 -1.47 16 6 C 0.11 1.29 6.48 -3.06 -0.02 1.27 16 7 N -0.63 -10.41 3.32 -170.38 -0.57 -10.98 16 8 C 0.53 11.25 7.60 -10.99 -0.08 11.17 16 9 O -0.50 -13.03 15.24 5.55 0.08 -12.95 16 10 C -0.11 -2.12 4.03 -27.88 -0.11 -2.23 16 11 C 0.05 1.13 1.24 -92.92 -0.12 1.01 16 12 H 0.05 1.38 5.26 -51.93 -0.27 1.11 16 13 C -0.48 -13.74 7.18 -34.44 -0.25 -13.99 16 14 H 0.07 2.23 8.05 -52.49 -0.42 1.81 16 15 C 0.08 2.50 5.47 -17.82 -0.10 2.40 16 16 N -0.90 -28.87 13.96 55.43 0.77 -28.09 16 17 Si 0.87 23.11 24.75 -169.99 -4.21 18.90 16 18 H -0.27 -7.06 7.11 56.52 0.40 -6.66 16 19 H -0.29 -7.85 7.11 56.52 0.40 -7.44 16 20 H -0.26 -6.70 5.94 56.52 0.34 -6.37 16 21 C -0.04 -0.81 4.30 -104.62 -0.45 -1.26 16 22 C -0.14 -2.92 8.16 -39.58 -0.32 -3.24 16 23 C -0.12 -2.18 10.05 -39.59 -0.40 -2.58 16 24 C -0.15 -2.51 10.05 -39.58 -0.40 -2.91 16 25 C -0.12 -2.14 10.05 -39.58 -0.40 -2.54 16 26 C -0.11 -2.10 8.94 -39.58 -0.35 -2.46 16 27 C 0.12 1.77 6.12 -2.41 -0.01 1.75 16 28 H 0.05 0.30 7.12 -51.93 -0.37 -0.07 16 29 H 0.06 0.31 7.18 -51.93 -0.37 -0.06 16 30 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 31 H 0.07 0.55 7.99 -51.93 -0.42 0.13 16 32 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.37 2.87 7.89 45.56 0.36 3.23 16 34 H 0.08 0.56 8.12 -51.93 -0.42 0.14 16 35 H 0.08 0.60 8.04 -51.93 -0.42 0.18 16 36 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.08 1.56 7.34 -51.93 -0.38 1.18 16 39 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 40 H 0.26 7.97 8.31 -40.82 -0.34 7.63 16 41 H 0.11 2.24 6.74 -52.49 -0.35 1.88 16 42 H 0.11 1.64 8.06 -52.49 -0.42 1.22 16 43 H 0.11 1.48 8.06 -52.49 -0.42 1.05 16 44 H 0.11 1.58 8.06 -52.49 -0.42 1.16 16 45 H 0.12 2.25 7.38 -52.49 -0.39 1.86 16 46 H 0.07 0.95 7.93 -51.93 -0.41 0.54 16 47 H 0.08 1.50 8.03 -51.93 -0.42 1.08 16 LS Contribution 371.23 15.07 5.59 5.59 Total: -1.00 -36.58 371.23 -8.66 -45.25 By element: Atomic # 1 Polarization: 11.94 SS G_CDS: -6.87 Total: 5.07 kcal Atomic # 6 Polarization: -12.75 SS G_CDS: -3.01 Total: -15.75 kcal Atomic # 7 Polarization: -39.28 SS G_CDS: 0.21 Total: -39.07 kcal Atomic # 8 Polarization: -19.61 SS G_CDS: -0.38 Total: -19.99 kcal Atomic # 14 Polarization: 23.11 SS G_CDS: -4.21 Total: 18.90 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -36.58 -8.66 -45.25 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356890069.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.883 kcal (2) G-P(sol) polarization free energy of solvation -36.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.247 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds