Wall clock time and date at job start Tue Mar 31 2020 12:19:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46955 * 2 1 4 4 O 1.42901 * 110.88847 * 67.42408 * 3 2 1 5 5 C 1.55157 * 111.00450 * 303.54840 * 3 2 1 6 6 C 1.54327 * 102.94408 * 206.42470 * 5 3 2 7 7 N 1.47025 * 107.27050 * 22.19182 * 6 5 3 8 8 C 1.34773 * 125.64855 * 181.02643 * 7 6 5 9 9 O 1.21285 * 119.99790 * 180.02562 * 8 7 6 10 10 C 1.50697 * 120.00115 * 0.02562 * 8 7 6 11 11 C 1.53003 * 109.47069 * 180.02562 * 10 8 7 12 12 H 1.08999 * 109.46915 * 55.00210 * 11 10 8 13 13 C 1.50694 * 109.47152 * 295.00149 * 11 10 8 14 14 H 1.08001 * 120.00347 * 334.72115 * 13 11 10 15 15 C 1.37875 * 119.99984 * 154.72565 * 13 11 10 16 16 N 1.31517 * 119.99833 * 184.85431 * 15 13 11 17 17 Si 1.86796 * 119.99962 * 4.85386 * 15 13 11 18 18 H 1.48497 * 109.47368 * 84.64199 * 17 15 13 19 19 H 1.48509 * 109.46917 * 204.63797 * 17 15 13 20 20 H 1.48496 * 109.46950 * 324.63824 * 17 15 13 21 21 C 1.50702 * 109.46890 * 175.00341 * 11 10 8 22 22 C 1.38242 * 119.99789 * 235.53782 * 21 11 10 23 23 C 1.38235 * 120.00016 * 179.97438 * 22 21 11 24 24 C 1.38229 * 119.99911 * 0.08627 * 23 22 21 25 25 C 1.38241 * 120.00395 * 359.86578 * 24 23 22 26 26 C 1.38233 * 120.00344 * 55.51029 * 21 11 10 27 27 C 1.47426 * 108.70251 * 1.28734 * 7 6 5 28 28 H 1.09002 * 109.46918 * 300.00137 * 1 2 3 29 29 H 1.09001 * 109.47055 * 60.00124 * 1 2 3 30 30 H 1.08994 * 109.46742 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.46812 * 240.00358 * 2 1 3 32 32 H 1.09001 * 109.47055 * 119.99876 * 2 1 3 33 33 H 0.96695 * 114.00089 * 297.57785 * 4 3 2 34 34 H 1.08999 * 110.72813 * 88.06000 * 5 3 2 35 35 H 1.09002 * 110.87392 * 324.85510 * 5 3 2 36 36 H 1.08998 * 109.88240 * 262.77374 * 6 5 3 37 37 H 1.08998 * 109.88256 * 141.60587 * 6 5 3 38 38 H 1.09001 * 109.47166 * 60.00026 * 10 8 7 39 39 H 1.08996 * 109.47195 * 300.00307 * 10 8 7 40 40 H 0.97003 * 119.99975 * 180.02562 * 16 15 13 41 41 H 1.08002 * 119.99883 * 359.69705 * 22 21 11 42 42 H 1.07999 * 119.99882 * 179.97438 * 23 22 21 43 43 H 1.07996 * 120.00151 * 179.97438 * 24 23 22 44 44 H 1.07998 * 120.00043 * 180.02562 * 25 24 23 45 45 H 1.07999 * 119.99991 * 0.02562 * 26 21 11 46 46 H 1.08994 * 110.37024 * 94.48320 * 27 7 6 47 47 H 1.09002 * 110.37142 * 216.80949 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 1.7266 2.0937 1.2328 5 6 1.4707 2.2337 -1.2072 6 6 2.5404 3.3206 -1.4437 7 7 3.7952 2.8342 -0.8515 8 6 4.9651 3.5031 -0.8309 9 8 5.9408 3.0024 -0.3130 10 6 5.0608 4.8730 -1.4515 11 6 6.4864 5.4058 -1.2936 12 1 7.1911 4.6882 -1.7137 13 6 6.7878 5.6087 0.1689 14 1 5.9825 5.7835 0.8670 15 6 8.0916 5.5711 0.6157 16 7 8.3481 5.6525 1.9030 17 14 9.4936 5.4047 -0.6074 18 1 9.8543 6.7460 -1.1326 19 1 10.6718 4.8048 0.0689 20 1 9.0694 4.5308 -1.7306 21 6 6.6147 6.7201 -2.0199 22 6 7.5925 6.8849 -2.9831 23 6 7.7099 8.0902 -3.6497 24 6 6.8506 9.1312 -3.3520 25 6 5.8721 8.9661 -2.3895 26 6 5.7542 7.7605 -1.7235 27 6 3.5633 1.4912 -0.2895 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3632 -1.0276 0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 0.7786 2.1724 1.4061 34 1 0.5113 2.6853 -0.9546 35 1 1.3742 1.5908 -2.0822 36 1 2.2381 4.2496 -0.9604 37 1 2.6738 3.4829 -2.5132 38 1 4.3635 5.5469 -0.9538 39 1 4.8120 4.8102 -2.5108 40 1 9.2654 5.6265 2.2174 41 1 8.2676 6.0734 -3.2116 42 1 8.4741 8.2190 -4.4019 43 1 6.9426 10.0730 -3.8724 44 1 5.2006 9.7794 -2.1571 45 1 4.9903 7.6318 -0.9710 46 1 3.8389 0.7243 -1.0133 47 1 4.1287 1.3633 0.6336 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000356890069.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:19:07 Heat of formation + Delta-G solvation = -86.882282 kcal Electronic energy + Delta-G solvation = -27135.695208 eV Core-core repulsion = 23475.007989 eV Total energy + Delta-G solvation = -3660.687219 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.29255 -40.20341 -39.30520 -36.46601 -35.87395 -33.92675 -33.72598 -31.67607 -31.21299 -30.63343 -29.52297 -27.69786 -24.90762 -23.96826 -23.81260 -23.25520 -21.39322 -21.19025 -19.99474 -19.07601 -18.29958 -17.73689 -17.29123 -16.81854 -16.68720 -16.22976 -16.02679 -15.53966 -15.47726 -15.24777 -14.87957 -14.77040 -14.44074 -14.16329 -14.00525 -13.80371 -13.70546 -13.54034 -13.35959 -13.25676 -12.93467 -12.79345 -12.66411 -12.64688 -12.16400 -12.15067 -11.92577 -11.86441 -11.82950 -11.52589 -11.48490 -11.10856 -10.88559 -10.76899 -10.52557 -9.65047 -9.54528 -9.33017 -8.25714 -6.22432 0.64016 0.70046 1.26058 1.30868 1.36317 1.83770 2.10694 2.35410 3.04165 3.06336 3.17315 3.48105 3.64470 3.80122 3.97105 4.06233 4.24526 4.25710 4.27894 4.29337 4.38422 4.45654 4.46586 4.55986 4.57985 4.63034 4.69604 4.78119 4.80341 4.83430 4.90656 4.93511 5.01119 5.13615 5.15447 5.19731 5.28951 5.34196 5.36192 5.45648 5.49087 5.66457 5.73617 5.78997 5.98602 6.28976 6.31635 6.61745 6.75685 6.89380 7.38544 7.42077 8.92051 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.015769 B = 0.003832 C = 0.003355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1775.186456 B = 7304.881128 C = 8343.702759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.136 4.136 3 C 0.123 3.877 4 O -0.572 6.572 5 C -0.140 4.140 6 C 0.095 3.905 7 N -0.627 5.627 8 C 0.520 3.480 9 O -0.567 6.567 10 C -0.099 4.099 11 C 0.051 3.949 12 H 0.031 0.969 13 C -0.462 4.462 14 H 0.028 0.972 15 C 0.017 3.983 16 N -0.954 5.954 17 Si 0.924 3.076 18 H -0.256 1.256 19 H -0.299 1.299 20 H -0.252 1.252 21 C -0.062 4.062 22 C -0.162 4.162 23 C -0.123 4.123 24 C -0.139 4.139 25 C -0.120 4.120 26 C -0.122 4.122 27 C 0.107 3.893 28 H 0.059 0.941 29 H 0.074 0.926 30 H 0.065 0.935 31 H 0.086 0.914 32 H 0.060 0.940 33 H 0.392 0.608 34 H 0.112 0.888 35 H 0.110 0.890 36 H 0.065 0.935 37 H 0.088 0.912 38 H 0.091 0.909 39 H 0.105 0.895 40 H 0.259 0.741 41 H 0.103 0.897 42 H 0.140 0.860 43 H 0.150 0.850 44 H 0.144 0.856 45 H 0.113 0.887 46 H 0.092 0.908 47 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.381 -4.591 -13.744 24.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.174 4.174 3 C 0.081 3.919 4 O -0.381 6.381 5 C -0.177 4.177 6 C -0.027 4.027 7 N -0.363 5.363 8 C 0.310 3.690 9 O -0.445 6.445 10 C -0.139 4.139 11 C 0.032 3.968 12 H 0.050 0.950 13 C -0.500 4.500 14 H 0.046 0.954 15 C -0.179 4.179 16 N -0.596 5.596 17 Si 0.751 3.249 18 H -0.181 1.181 19 H -0.226 1.226 20 H -0.176 1.176 21 C -0.063 4.063 22 C -0.180 4.180 23 C -0.140 4.140 24 C -0.157 4.157 25 C -0.137 4.137 26 C -0.140 4.140 27 C -0.016 4.016 28 H 0.078 0.922 29 H 0.093 0.907 30 H 0.084 0.916 31 H 0.105 0.895 32 H 0.079 0.921 33 H 0.242 0.758 34 H 0.130 0.870 35 H 0.128 0.872 36 H 0.084 0.916 37 H 0.106 0.894 38 H 0.110 0.890 39 H 0.123 0.877 40 H 0.068 0.932 41 H 0.121 0.879 42 H 0.158 0.842 43 H 0.167 0.833 44 H 0.162 0.838 45 H 0.131 0.869 46 H 0.110 0.890 47 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -18.006 -4.766 -13.309 22.892 hybrid contribution 0.828 -0.354 0.647 1.109 sum -17.178 -5.120 -12.661 21.946 Atomic orbital electron populations 1.21791 0.93130 1.03020 1.02872 1.21987 0.98251 0.93775 1.03383 1.22348 0.92093 0.92962 0.84463 1.86622 1.30834 1.81180 1.39439 1.23356 0.98426 0.97038 0.98922 1.22268 0.82797 0.98657 0.99004 1.48585 1.10409 1.18304 1.58988 1.20867 0.81283 0.87803 0.79046 1.90720 1.38011 1.69907 1.45816 1.21483 0.99138 0.92014 1.01257 1.18097 0.94010 0.90748 0.93975 0.95035 1.20805 0.92192 1.45646 0.91378 0.95387 1.25672 1.01423 0.94655 0.96175 1.70053 1.20035 1.54218 1.15269 0.86148 0.78997 0.79536 0.80263 1.18067 1.22616 1.17600 1.20461 0.94943 0.97579 0.93305 1.21192 0.99408 0.98938 0.98445 1.21338 0.99882 0.92783 1.00032 1.21358 0.95861 0.99486 0.98999 1.21428 0.99103 0.96898 0.96306 1.21019 0.99951 0.93507 0.99495 1.22347 0.95851 0.85331 0.98036 0.92238 0.90749 0.91594 0.89531 0.92130 0.75778 0.86993 0.87189 0.91624 0.89421 0.89029 0.87680 0.93202 0.87939 0.84210 0.83258 0.83790 0.86885 0.88988 0.94243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.29 9.48 71.98 0.68 -0.60 16 2 C -0.14 -1.91 5.34 30.60 0.16 -1.75 16 3 C 0.12 2.45 0.98 -9.32 -0.01 2.44 16 4 O -0.57 -13.74 13.18 -148.98 -1.96 -15.70 16 5 C -0.14 -1.93 4.84 31.78 0.15 -1.77 16 6 C 0.09 2.05 6.48 86.73 0.56 2.61 16 7 N -0.63 -21.08 3.32 -811.34 -2.70 -23.78 16 8 C 0.52 23.12 7.60 87.66 0.67 23.79 16 9 O -0.57 -32.10 15.24 -3.05 -0.05 -32.15 16 10 C -0.10 -3.98 4.03 29.85 0.12 -3.86 16 11 C 0.05 2.50 1.24 -12.29 -0.02 2.49 16 12 H 0.03 1.68 5.26 -2.39 -0.01 1.66 16 13 C -0.46 -28.02 7.18 25.60 0.18 -27.84 16 14 H 0.03 1.88 8.05 -2.91 -0.02 1.86 16 15 C 0.02 1.07 5.47 84.65 0.46 1.53 16 16 N -0.95 -65.29 13.96 21.45 0.30 -64.99 16 17 Si 0.92 49.75 24.75 68.60 1.70 51.45 16 18 H -0.26 -12.92 7.11 99.48 0.71 -12.21 16 19 H -0.30 -16.17 7.11 99.48 0.71 -15.47 16 20 H -0.25 -12.89 5.94 99.48 0.59 -12.30 16 21 C -0.06 -2.67 4.30 -19.86 -0.09 -2.75 16 22 C -0.16 -6.37 8.16 22.27 0.18 -6.19 16 23 C -0.12 -3.90 10.05 22.27 0.22 -3.67 16 24 C -0.14 -3.95 10.05 22.27 0.22 -3.72 16 25 C -0.12 -3.67 10.05 22.27 0.22 -3.44 16 26 C -0.12 -4.62 8.94 22.27 0.20 -4.42 16 27 C 0.11 3.25 6.12 86.93 0.53 3.78 16 28 H 0.06 0.47 7.12 -2.39 -0.02 0.45 16 29 H 0.07 0.43 7.18 -2.39 -0.02 0.42 16 30 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 31 H 0.09 1.03 7.99 -2.39 -0.02 1.01 16 32 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 33 H 0.39 5.43 7.89 -74.06 -0.58 4.85 16 34 H 0.11 0.98 8.12 -2.39 -0.02 0.96 16 35 H 0.11 1.02 8.04 -2.39 -0.02 1.00 16 36 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 37 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 38 H 0.09 3.49 7.34 -2.39 -0.02 3.47 16 39 H 0.11 3.38 8.14 -2.39 -0.02 3.36 16 40 H 0.26 16.81 8.31 -92.71 -0.77 16.03 16 41 H 0.10 4.09 6.74 -2.91 -0.02 4.07 16 42 H 0.14 3.54 8.06 -2.91 -0.02 3.51 16 43 H 0.15 3.06 8.06 -2.91 -0.02 3.04 16 44 H 0.14 3.43 8.06 -2.91 -0.02 3.40 16 45 H 0.11 4.29 7.38 -2.91 -0.02 4.27 16 46 H 0.09 2.40 7.93 -2.39 -0.02 2.38 16 47 H 0.04 1.53 8.03 -2.39 -0.02 1.51 16 Total: -1.00 -88.83 371.23 2.02 -86.81 By element: Atomic # 1 Polarization: 21.48 SS G_CDS: 0.26 Total: 21.74 kcal Atomic # 6 Polarization: -27.86 SS G_CDS: 4.47 Total: -23.39 kcal Atomic # 7 Polarization: -86.36 SS G_CDS: -2.40 Total: -88.76 kcal Atomic # 8 Polarization: -45.84 SS G_CDS: -2.01 Total: -47.85 kcal Atomic # 14 Polarization: 49.75 SS G_CDS: 1.70 Total: 51.45 kcal Total: -88.83 2.02 -86.81 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356890069.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.073 kcal (2) G-P(sol) polarization free energy of solvation -88.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.809 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds