Wall clock time and date at job start Tue Mar 31 2020 12:19:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47242 * 2 1 4 4 O 1.42897 * 110.88758 * 67.42751 * 3 2 1 5 5 C 1.55161 * 111.00572 * 303.54659 * 3 2 1 6 6 C 1.54318 * 102.94389 * 206.42298 * 5 3 2 7 7 N 1.47032 * 107.27368 * 22.19297 * 6 5 3 8 8 C 1.34769 * 125.65051 * 181.01695 * 7 6 5 9 9 O 1.21277 * 120.00045 * 180.02562 * 8 7 6 10 10 C 1.50708 * 119.99955 * 0.03277 * 8 7 6 11 11 C 1.52997 * 109.46924 * 179.97438 * 10 8 7 12 12 H 1.08996 * 109.47499 * 304.99986 * 11 10 8 13 13 C 1.50700 * 109.47267 * 64.99824 * 11 10 8 14 14 H 1.08003 * 120.00213 * 26.93926 * 13 11 10 15 15 C 1.37879 * 120.00163 * 206.94318 * 13 11 10 16 16 N 1.31520 * 119.99752 * 186.81497 * 15 13 11 17 17 Si 1.86798 * 120.00091 * 6.81343 * 15 13 11 18 18 H 1.48508 * 109.46680 * 274.46197 * 17 15 13 19 19 H 1.48495 * 109.47100 * 34.45715 * 17 15 13 20 20 H 1.48493 * 109.47217 * 154.46364 * 17 15 13 21 21 C 1.50693 * 109.47209 * 184.99678 * 11 10 8 22 22 C 1.38236 * 120.00302 * 298.06306 * 21 11 10 23 23 C 1.38239 * 120.00666 * 179.78395 * 22 21 11 24 24 C 1.38231 * 119.99384 * 0.44627 * 23 22 21 25 25 C 1.38238 * 120.00323 * 359.80480 * 24 23 22 26 26 C 1.38233 * 119.99780 * 359.97438 * 25 24 23 27 27 C 1.47422 * 108.69757 * 1.28670 * 7 6 5 28 28 H 1.08997 * 109.46665 * 299.99919 * 1 2 3 29 29 H 1.08997 * 109.46853 * 59.99647 * 1 2 3 30 30 H 1.08993 * 109.46962 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47033 * 239.99875 * 2 1 3 32 32 H 1.08999 * 109.47572 * 120.00192 * 2 1 3 33 33 H 0.96699 * 114.00163 * 297.57283 * 4 3 2 34 34 H 1.08999 * 110.71775 * 88.05694 * 5 3 2 35 35 H 1.08998 * 110.86649 * 324.85742 * 5 3 2 36 36 H 1.08999 * 109.88491 * 262.77767 * 6 5 3 37 37 H 1.09002 * 109.88437 * 141.61067 * 6 5 3 38 38 H 1.08998 * 109.47096 * 59.99082 * 10 8 7 39 39 H 1.08998 * 109.46869 * 299.98996 * 10 8 7 40 40 H 0.96999 * 119.99233 * 179.97438 * 16 15 13 41 41 H 1.08011 * 119.99674 * 359.97438 * 22 21 11 42 42 H 1.08000 * 120.00023 * 180.27348 * 23 22 21 43 43 H 1.08000 * 119.99709 * 179.83360 * 24 23 22 44 44 H 1.08002 * 120.00057 * 180.02562 * 25 24 23 45 45 H 1.08007 * 120.00100 * 179.97438 * 26 25 24 46 46 H 1.09001 * 110.36994 * 94.48650 * 27 7 6 47 47 H 1.09003 * 110.36733 * 216.80309 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 1.7267 2.0936 1.2328 5 6 1.4707 2.2337 -1.2072 6 6 2.5405 3.3205 -1.4436 7 7 3.7953 2.8341 -0.8514 8 6 4.9652 3.5028 -0.8309 9 8 5.9408 3.0022 -0.3130 10 6 5.0610 4.8729 -1.4516 11 6 6.4862 5.4061 -1.2927 12 1 6.7667 5.3854 -0.2397 13 6 7.4364 4.5432 -2.0825 14 1 7.0835 4.0058 -2.9504 15 6 8.7562 4.4398 -1.6973 16 7 9.6150 3.7975 -2.4586 17 14 9.3244 5.2118 -0.0940 18 1 9.6637 6.6391 -0.3249 19 1 8.2372 5.1182 0.9131 20 1 10.5240 4.4922 0.4041 21 6 6.5523 6.8226 -1.8025 22 6 6.2763 7.0933 -3.1297 23 6 6.3326 8.3933 -3.5964 24 6 6.6738 9.4215 -2.7379 25 6 6.9548 9.1503 -1.4118 26 6 6.8941 7.8509 -0.9442 27 6 3.5633 1.4911 -0.2895 28 1 -0.3632 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 0.7786 2.1724 1.4062 34 1 0.5114 2.6852 -0.9545 35 1 1.3742 1.5907 -2.0821 36 1 2.2382 4.2496 -0.9604 37 1 2.6739 3.4829 -2.5132 38 1 4.3637 5.5467 -0.9539 39 1 4.8123 4.8100 -2.5109 40 1 10.5436 3.7251 -2.1876 41 1 6.0137 6.2893 -3.8015 42 1 6.1126 8.6051 -4.6323 43 1 6.7203 10.4368 -3.1030 44 1 7.2210 9.9538 -0.7410 45 1 7.1141 7.6389 0.0918 46 1 3.8389 0.7242 -1.0134 47 1 4.1287 1.3632 0.6336 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000356890071.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:19:14 Heat of formation + Delta-G solvation = -62.883611 kcal Electronic energy + Delta-G solvation = -27097.832072 eV Core-core repulsion = 23438.185514 eV Total energy + Delta-G solvation = -3659.646558 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.08732 -38.75292 -37.91443 -35.28921 -34.04688 -33.14552 -31.63819 -30.21154 -30.08961 -29.42191 -28.27495 -25.87316 -23.64408 -23.05864 -22.34884 -21.78460 -20.38115 -19.77023 -18.54566 -17.07068 -16.88503 -16.60680 -15.95216 -15.70986 -15.25956 -14.80773 -14.47422 -14.28854 -14.13089 -14.01348 -13.67479 -13.25568 -12.83168 -12.76275 -12.67570 -12.61135 -12.44590 -12.17308 -12.11779 -11.93787 -11.79059 -11.71109 -11.42463 -11.26006 -11.07144 -10.77051 -10.69274 -10.47317 -10.31889 -10.08522 -9.84597 -9.56624 -9.12012 -8.89842 -8.41909 -8.19335 -8.18001 -7.79215 -5.95398 -3.90909 2.11704 2.17316 3.39124 3.44786 3.47976 3.49974 3.54909 3.88517 4.27442 4.47213 4.54733 4.55441 4.60339 4.86592 4.99310 5.04316 5.23008 5.32018 5.42713 5.51572 5.53946 5.54875 5.57992 5.63950 5.68234 5.70579 5.71756 5.83864 5.88160 5.92281 5.98616 6.01218 6.06922 6.12897 6.26216 6.35735 6.54468 6.68768 6.75300 6.86302 7.08205 7.16410 7.29161 7.47983 7.62410 7.74578 7.85317 8.03433 8.56423 8.99726 9.04285 9.69275 11.17785 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.015011 B = 0.003851 C = 0.003370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1864.857245 B = 7268.786929 C = 8305.500516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.142 4.142 3 C 0.117 3.883 4 O -0.543 6.543 5 C -0.155 4.155 6 C 0.109 3.891 7 N -0.630 5.630 8 C 0.532 3.468 9 O -0.499 6.499 10 C -0.108 4.108 11 C 0.047 3.953 12 H 0.054 0.946 13 C -0.482 4.482 14 H 0.071 0.929 15 C 0.084 3.916 16 N -0.900 5.900 17 Si 0.866 3.134 18 H -0.274 1.274 19 H -0.261 1.261 20 H -0.291 1.291 21 C -0.038 4.038 22 C -0.101 4.101 23 C -0.126 4.126 24 C -0.150 4.150 25 C -0.124 4.124 26 C -0.139 4.139 27 C 0.122 3.878 28 H 0.054 0.946 29 H 0.058 0.942 30 H 0.058 0.942 31 H 0.076 0.924 32 H 0.074 0.926 33 H 0.372 0.628 34 H 0.082 0.918 35 H 0.084 0.916 36 H 0.065 0.935 37 H 0.066 0.934 38 H 0.068 0.932 39 H 0.083 0.917 40 H 0.262 0.738 41 H 0.119 0.881 42 H 0.110 0.890 43 H 0.108 0.892 44 H 0.108 0.892 45 H 0.108 0.892 46 H 0.077 0.923 47 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.318 -0.749 2.056 20.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.181 4.181 3 C 0.075 3.925 4 O -0.349 6.349 5 C -0.193 4.193 6 C -0.015 4.015 7 N -0.369 5.369 8 C 0.321 3.679 9 O -0.370 6.370 10 C -0.148 4.148 11 C 0.028 3.972 12 H 0.072 0.928 13 C -0.519 4.519 14 H 0.089 0.911 15 C -0.118 4.118 16 N -0.537 5.537 17 Si 0.695 3.305 18 H -0.200 1.200 19 H -0.186 1.186 20 H -0.218 1.218 21 C -0.039 4.039 22 C -0.119 4.119 23 C -0.145 4.145 24 C -0.168 4.168 25 C -0.142 4.142 26 C -0.157 4.157 27 C -0.001 4.001 28 H 0.073 0.927 29 H 0.078 0.922 30 H 0.077 0.923 31 H 0.095 0.905 32 H 0.093 0.907 33 H 0.220 0.780 34 H 0.100 0.900 35 H 0.103 0.897 36 H 0.084 0.916 37 H 0.085 0.915 38 H 0.086 0.914 39 H 0.101 0.899 40 H 0.071 0.929 41 H 0.137 0.863 42 H 0.128 0.872 43 H 0.126 0.874 44 H 0.127 0.873 45 H 0.126 0.874 46 H 0.095 0.905 47 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -18.794 -0.996 2.365 18.968 hybrid contribution -0.135 0.331 0.637 0.730 sum -18.929 -0.665 3.002 19.177 Atomic orbital electron populations 1.21797 0.95346 1.02216 1.01855 1.22035 0.96482 0.95965 1.03576 1.22384 0.95290 0.90942 0.83873 1.86627 1.28800 1.80843 1.38643 1.23328 0.98587 0.98193 0.99241 1.21847 0.84078 0.97242 0.98344 1.48584 1.10125 1.17936 1.60241 1.20555 0.80356 0.87458 0.79512 1.90747 1.34493 1.68607 1.43142 1.21586 1.00286 0.92072 1.00859 1.18259 0.91939 0.88454 0.98586 0.92845 1.20588 0.92895 1.25966 1.12411 0.91084 1.24858 0.96523 0.94300 0.96128 1.69895 1.03495 1.43062 1.37294 0.86968 0.78274 0.79407 0.85893 1.19997 1.18566 1.21789 1.20761 0.93145 0.96428 0.93541 1.20948 0.99801 0.95617 0.95531 1.21051 1.01180 0.93415 0.98808 1.20854 1.03502 0.98361 0.94073 1.20953 1.01205 0.96345 0.95725 1.21065 1.02410 0.92766 0.99449 1.22079 0.92530 0.85986 0.99531 0.92735 0.92247 0.92276 0.90485 0.90706 0.78039 0.89966 0.89716 0.91628 0.91548 0.91372 0.89858 0.92862 0.86272 0.87163 0.87398 0.87340 0.87377 0.90496 0.89893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.89 9.48 37.16 0.35 -0.53 16 2 C -0.14 -1.11 5.34 -26.73 -0.14 -1.26 16 3 C 0.12 1.19 0.98 -88.35 -0.09 1.10 16 4 O -0.54 -6.01 13.18 -35.23 -0.46 -6.47 16 5 C -0.16 -1.34 4.84 -24.90 -0.12 -1.46 16 6 C 0.11 1.29 6.48 -3.06 -0.02 1.27 16 7 N -0.63 -10.37 3.32 -170.37 -0.57 -10.93 16 8 C 0.53 11.23 7.60 -10.98 -0.08 11.14 16 9 O -0.50 -12.99 15.24 5.56 0.08 -12.91 16 10 C -0.11 -2.13 4.12 -27.88 -0.11 -2.24 16 11 C 0.05 1.11 1.21 -92.93 -0.11 1.00 16 12 H 0.05 1.37 4.88 -51.93 -0.25 1.12 16 13 C -0.48 -13.59 6.98 -34.44 -0.24 -13.83 16 14 H 0.07 2.16 8.06 -52.48 -0.42 1.74 16 15 C 0.08 2.53 5.47 -17.82 -0.10 2.43 16 16 N -0.90 -28.56 13.96 55.43 0.77 -27.79 16 17 Si 0.87 23.28 26.57 -169.99 -4.52 18.76 16 18 H -0.27 -7.13 7.11 56.52 0.40 -6.73 16 19 H -0.26 -6.90 6.29 56.52 0.36 -6.54 16 20 H -0.29 -7.85 7.11 56.52 0.40 -7.45 16 21 C -0.04 -0.82 4.52 -104.63 -0.47 -1.30 16 22 C -0.10 -2.01 8.86 -39.58 -0.35 -2.36 16 23 C -0.13 -2.20 10.05 -39.58 -0.40 -2.60 16 24 C -0.15 -2.50 10.05 -39.58 -0.40 -2.90 16 25 C -0.12 -2.21 10.05 -39.58 -0.40 -2.60 16 26 C -0.14 -2.83 9.07 -39.58 -0.36 -3.19 16 27 C 0.12 1.77 6.12 -2.41 -0.01 1.75 16 28 H 0.05 0.27 7.12 -51.93 -0.37 -0.10 16 29 H 0.06 0.31 7.18 -51.93 -0.37 -0.07 16 30 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.08 0.58 7.99 -51.93 -0.42 0.16 16 32 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.37 2.50 7.89 45.56 0.36 2.86 16 34 H 0.08 0.54 8.12 -51.93 -0.42 0.11 16 35 H 0.08 0.64 8.04 -51.93 -0.42 0.22 16 36 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 37 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 38 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 39 H 0.08 1.52 7.68 -51.93 -0.40 1.13 16 40 H 0.26 7.90 8.31 -40.82 -0.34 7.56 16 41 H 0.12 2.32 7.71 -52.48 -0.40 1.92 16 42 H 0.11 1.60 8.06 -52.49 -0.42 1.18 16 43 H 0.11 1.48 8.06 -52.49 -0.42 1.06 16 44 H 0.11 1.63 8.06 -52.49 -0.42 1.20 16 45 H 0.11 2.16 7.89 -52.48 -0.41 1.74 16 46 H 0.08 1.05 7.93 -51.93 -0.41 0.63 16 47 H 0.08 1.39 8.03 -51.93 -0.42 0.98 16 LS Contribution 375.73 15.07 5.66 5.66 Total: -1.00 -36.04 375.73 -9.01 -45.05 By element: Atomic # 1 Polarization: 11.13 SS G_CDS: -6.92 Total: 4.20 kcal Atomic # 6 Polarization: -12.51 SS G_CDS: -3.06 Total: -15.57 kcal Atomic # 7 Polarization: -38.93 SS G_CDS: 0.21 Total: -38.72 kcal Atomic # 8 Polarization: -19.00 SS G_CDS: -0.38 Total: -19.38 kcal Atomic # 14 Polarization: 23.28 SS G_CDS: -4.52 Total: 18.76 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -36.04 -9.01 -45.05 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356890071.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.836 kcal (2) G-P(sol) polarization free energy of solvation -36.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.047 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds