Wall clock time and date at job start Tue Mar 31 2020 12:19:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47242 * 2 1 4 4 O 1.42897 * 110.88758 * 67.42751 * 3 2 1 5 5 C 1.55161 * 111.00572 * 303.54659 * 3 2 1 6 6 C 1.54318 * 102.94389 * 206.42298 * 5 3 2 7 7 N 1.47032 * 107.27368 * 22.19297 * 6 5 3 8 8 C 1.34769 * 125.65051 * 181.01695 * 7 6 5 9 9 O 1.21277 * 120.00045 * 180.02562 * 8 7 6 10 10 C 1.50708 * 119.99955 * 0.03277 * 8 7 6 11 11 C 1.52997 * 109.46924 * 179.97438 * 10 8 7 12 12 H 1.08996 * 109.47499 * 304.99986 * 11 10 8 13 13 C 1.50700 * 109.47267 * 64.99824 * 11 10 8 14 14 H 1.08003 * 120.00213 * 26.93926 * 13 11 10 15 15 C 1.37879 * 120.00163 * 206.94318 * 13 11 10 16 16 N 1.31520 * 119.99752 * 186.81497 * 15 13 11 17 17 Si 1.86798 * 120.00091 * 6.81343 * 15 13 11 18 18 H 1.48508 * 109.46680 * 274.46197 * 17 15 13 19 19 H 1.48495 * 109.47100 * 34.45715 * 17 15 13 20 20 H 1.48493 * 109.47217 * 154.46364 * 17 15 13 21 21 C 1.50693 * 109.47209 * 184.99678 * 11 10 8 22 22 C 1.38236 * 120.00302 * 298.06306 * 21 11 10 23 23 C 1.38239 * 120.00666 * 179.78395 * 22 21 11 24 24 C 1.38231 * 119.99384 * 0.44627 * 23 22 21 25 25 C 1.38238 * 120.00323 * 359.80480 * 24 23 22 26 26 C 1.38233 * 119.99780 * 359.97438 * 25 24 23 27 27 C 1.47422 * 108.69757 * 1.28670 * 7 6 5 28 28 H 1.08997 * 109.46665 * 299.99919 * 1 2 3 29 29 H 1.08997 * 109.46853 * 59.99647 * 1 2 3 30 30 H 1.08993 * 109.46962 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47033 * 239.99875 * 2 1 3 32 32 H 1.08999 * 109.47572 * 120.00192 * 2 1 3 33 33 H 0.96699 * 114.00163 * 297.57283 * 4 3 2 34 34 H 1.08999 * 110.71775 * 88.05694 * 5 3 2 35 35 H 1.08998 * 110.86649 * 324.85742 * 5 3 2 36 36 H 1.08999 * 109.88491 * 262.77767 * 6 5 3 37 37 H 1.09002 * 109.88437 * 141.61067 * 6 5 3 38 38 H 1.08998 * 109.47096 * 59.99082 * 10 8 7 39 39 H 1.08998 * 109.46869 * 299.98996 * 10 8 7 40 40 H 0.96999 * 119.99233 * 179.97438 * 16 15 13 41 41 H 1.08011 * 119.99674 * 359.97438 * 22 21 11 42 42 H 1.08000 * 120.00023 * 180.27348 * 23 22 21 43 43 H 1.08000 * 119.99709 * 179.83360 * 24 23 22 44 44 H 1.08002 * 120.00057 * 180.02562 * 25 24 23 45 45 H 1.08007 * 120.00100 * 179.97438 * 26 25 24 46 46 H 1.09001 * 110.36994 * 94.48650 * 27 7 6 47 47 H 1.09003 * 110.36733 * 216.80309 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 1.7267 2.0936 1.2328 5 6 1.4707 2.2337 -1.2072 6 6 2.5405 3.3205 -1.4436 7 7 3.7953 2.8341 -0.8514 8 6 4.9652 3.5028 -0.8309 9 8 5.9408 3.0022 -0.3130 10 6 5.0610 4.8729 -1.4516 11 6 6.4862 5.4061 -1.2927 12 1 6.7667 5.3854 -0.2397 13 6 7.4364 4.5432 -2.0825 14 1 7.0835 4.0058 -2.9504 15 6 8.7562 4.4398 -1.6973 16 7 9.6150 3.7975 -2.4586 17 14 9.3244 5.2118 -0.0940 18 1 9.6637 6.6391 -0.3249 19 1 8.2372 5.1182 0.9131 20 1 10.5240 4.4922 0.4041 21 6 6.5523 6.8226 -1.8025 22 6 6.2763 7.0933 -3.1297 23 6 6.3326 8.3933 -3.5964 24 6 6.6738 9.4215 -2.7379 25 6 6.9548 9.1503 -1.4118 26 6 6.8941 7.8509 -0.9442 27 6 3.5633 1.4911 -0.2895 28 1 -0.3632 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 0.7786 2.1724 1.4062 34 1 0.5114 2.6852 -0.9545 35 1 1.3742 1.5907 -2.0821 36 1 2.2382 4.2496 -0.9604 37 1 2.6739 3.4829 -2.5132 38 1 4.3637 5.5467 -0.9539 39 1 4.8123 4.8100 -2.5109 40 1 10.5436 3.7251 -2.1876 41 1 6.0137 6.2893 -3.8015 42 1 6.1126 8.6051 -4.6323 43 1 6.7203 10.4368 -3.1030 44 1 7.2210 9.9538 -0.7410 45 1 7.1141 7.6389 0.0918 46 1 3.8389 0.7242 -1.0134 47 1 4.1287 1.3632 0.6336 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000356890071.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:19:13 Heat of formation + Delta-G solvation = -88.251856 kcal Electronic energy + Delta-G solvation = -27098.932121 eV Core-core repulsion = 23438.185514 eV Total energy + Delta-G solvation = -3660.746608 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.29627 -40.17911 -39.30436 -36.46176 -35.86411 -33.91949 -33.71204 -31.63674 -31.22283 -30.64320 -29.52832 -27.67874 -24.90699 -23.97261 -23.79637 -23.23430 -21.37932 -21.19216 -20.00345 -19.07432 -18.27516 -17.75322 -17.27598 -16.83913 -16.56934 -16.39729 -15.95319 -15.52278 -15.40622 -15.22472 -14.87258 -14.81401 -14.44577 -14.09440 -13.95318 -13.94301 -13.70952 -13.52646 -13.37199 -13.24428 -12.90413 -12.78922 -12.77712 -12.65699 -12.15966 -12.13437 -11.91919 -11.88580 -11.81032 -11.53763 -11.50049 -11.08326 -10.87839 -10.72536 -10.55776 -9.64292 -9.55403 -9.32932 -8.26295 -6.21086 0.65930 0.71249 1.24997 1.29681 1.38593 1.84551 2.08745 2.36043 3.04697 3.05360 3.18841 3.47031 3.63886 3.79705 3.97015 4.08640 4.23763 4.27401 4.27638 4.29019 4.38808 4.45195 4.46899 4.54792 4.58757 4.62862 4.70859 4.76484 4.82032 4.84356 4.90626 4.92924 5.01812 5.13095 5.15786 5.18990 5.28459 5.34891 5.37942 5.45404 5.48359 5.66000 5.74590 5.79888 6.00601 6.30306 6.33105 6.60958 6.76267 6.89204 7.39730 7.41737 8.91095 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.015011 B = 0.003851 C = 0.003370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1864.857245 B = 7268.786929 C = 8305.500516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.138 4.138 3 C 0.128 3.872 4 O -0.567 6.567 5 C -0.141 4.141 6 C 0.095 3.905 7 N -0.627 5.627 8 C 0.521 3.479 9 O -0.567 6.567 10 C -0.100 4.100 11 C 0.049 3.951 12 H 0.029 0.971 13 C -0.460 4.460 14 H 0.035 0.965 15 C 0.024 3.976 16 N -0.951 5.951 17 Si 0.917 3.083 18 H -0.257 1.257 19 H -0.263 1.263 20 H -0.296 1.296 21 C -0.063 4.063 22 C -0.117 4.117 23 C -0.122 4.122 24 C -0.139 4.139 25 C -0.123 4.123 26 C -0.159 4.159 27 C 0.107 3.893 28 H 0.063 0.937 29 H 0.072 0.928 30 H 0.064 0.936 31 H 0.080 0.920 32 H 0.063 0.937 33 H 0.393 0.607 34 H 0.116 0.884 35 H 0.102 0.898 36 H 0.075 0.925 37 H 0.077 0.923 38 H 0.099 0.901 39 H 0.096 0.904 40 H 0.259 0.741 41 H 0.112 0.888 42 H 0.143 0.857 43 H 0.149 0.851 44 H 0.140 0.860 45 H 0.103 0.897 46 H 0.081 0.919 47 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.756 1.842 1.519 23.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.176 4.176 3 C 0.087 3.913 4 O -0.376 6.376 5 C -0.179 4.179 6 C -0.027 4.027 7 N -0.363 5.363 8 C 0.311 3.689 9 O -0.444 6.444 10 C -0.139 4.139 11 C 0.030 3.970 12 H 0.048 0.952 13 C -0.498 4.498 14 H 0.053 0.947 15 C -0.172 4.172 16 N -0.593 5.593 17 Si 0.744 3.256 18 H -0.181 1.181 19 H -0.188 1.188 20 H -0.222 1.222 21 C -0.064 4.064 22 C -0.135 4.135 23 C -0.140 4.140 24 C -0.157 4.157 25 C -0.141 4.141 26 C -0.177 4.177 27 C -0.016 4.016 28 H 0.082 0.918 29 H 0.091 0.909 30 H 0.083 0.917 31 H 0.098 0.902 32 H 0.082 0.918 33 H 0.244 0.756 34 H 0.134 0.866 35 H 0.121 0.879 36 H 0.094 0.906 37 H 0.095 0.905 38 H 0.117 0.883 39 H 0.114 0.886 40 H 0.068 0.932 41 H 0.130 0.870 42 H 0.161 0.839 43 H 0.167 0.833 44 H 0.158 0.842 45 H 0.121 0.879 46 H 0.099 0.901 47 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -22.337 1.614 1.824 22.469 hybrid contribution 0.773 -0.439 0.759 1.169 sum -21.565 1.175 2.583 21.750 Atomic orbital electron populations 1.21785 0.93013 1.03010 1.02953 1.21994 0.98345 0.93957 1.03281 1.22243 0.91803 0.92794 0.84506 1.86576 1.30952 1.81050 1.39025 1.23357 0.98588 0.97058 0.98890 1.22260 0.82759 0.98936 0.98761 1.48583 1.10370 1.18316 1.59010 1.20848 0.80927 0.88101 0.79010 1.90707 1.37201 1.70166 1.46373 1.21486 0.98639 0.91937 1.01884 1.18101 0.92999 0.89686 0.96215 0.95244 1.20785 0.93257 1.24973 1.10769 0.94654 1.25545 0.97156 0.95636 0.98904 1.70025 1.03766 1.46209 1.39260 0.86158 0.77364 0.79438 0.82651 1.18144 1.18766 1.22243 1.20462 0.95979 0.95165 0.94758 1.21010 1.00773 0.97052 0.94715 1.21422 0.99713 0.92238 1.00620 1.21354 1.00912 1.00089 0.93306 1.21331 1.00006 0.95819 0.96962 1.21187 1.03234 0.93965 0.99292 1.22318 0.96015 0.85199 0.98042 0.91811 0.90939 0.91725 0.90154 0.91836 0.75633 0.86557 0.87927 0.90619 0.90452 0.88331 0.88561 0.93165 0.87024 0.83929 0.83315 0.84198 0.87906 0.90145 0.93436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.21 9.48 71.98 0.68 -0.53 16 2 C -0.14 -1.91 5.34 30.59 0.16 -1.75 16 3 C 0.13 2.42 0.98 -9.32 -0.01 2.41 16 4 O -0.57 -11.67 13.18 -148.98 -1.96 -13.63 16 5 C -0.14 -1.95 4.84 31.78 0.15 -1.79 16 6 C 0.09 2.05 6.48 86.73 0.56 2.62 16 7 N -0.63 -20.97 3.32 -811.34 -2.70 -23.67 16 8 C 0.52 23.01 7.60 87.66 0.67 23.67 16 9 O -0.57 -31.71 15.24 -3.02 -0.05 -31.76 16 10 C -0.10 -4.00 4.12 29.85 0.12 -3.88 16 11 C 0.05 2.41 1.21 -12.29 -0.01 2.39 16 12 H 0.03 1.58 4.88 -2.39 -0.01 1.56 16 13 C -0.46 -27.32 6.98 25.60 0.18 -27.14 16 14 H 0.04 2.29 8.06 -2.91 -0.02 2.26 16 15 C 0.02 1.50 5.47 84.65 0.46 1.97 16 16 N -0.95 -63.61 13.96 21.45 0.30 -63.31 16 17 Si 0.92 50.15 26.57 68.60 1.82 51.97 16 18 H -0.26 -13.11 7.11 99.48 0.71 -12.41 16 19 H -0.26 -14.25 6.29 99.48 0.63 -13.63 16 20 H -0.30 -16.14 7.11 99.48 0.71 -15.43 16 21 C -0.06 -2.71 4.52 -19.87 -0.09 -2.80 16 22 C -0.12 -4.54 8.86 22.27 0.20 -4.35 16 23 C -0.12 -3.82 10.05 22.27 0.22 -3.60 16 24 C -0.14 -3.99 10.05 22.27 0.22 -3.76 16 25 C -0.12 -3.94 10.05 22.27 0.22 -3.71 16 26 C -0.16 -6.25 9.07 22.27 0.20 -6.05 16 27 C 0.11 3.23 6.12 86.93 0.53 3.76 16 28 H 0.06 0.41 7.12 -2.39 -0.02 0.39 16 29 H 0.07 0.42 7.18 -2.39 -0.02 0.41 16 30 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 31 H 0.08 1.07 7.99 -2.39 -0.02 1.05 16 32 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 33 H 0.39 4.16 7.89 -74.06 -0.58 3.57 16 34 H 0.12 0.91 8.12 -2.39 -0.02 0.89 16 35 H 0.10 1.12 8.04 -2.39 -0.02 1.10 16 36 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 37 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 38 H 0.10 3.30 8.14 -2.39 -0.02 3.29 16 39 H 0.10 3.56 7.68 -2.39 -0.02 3.54 16 40 H 0.26 16.51 8.31 -92.71 -0.77 15.74 16 41 H 0.11 4.37 7.71 -2.90 -0.02 4.35 16 42 H 0.14 3.51 8.06 -2.91 -0.02 3.48 16 43 H 0.15 3.11 8.06 -2.91 -0.02 3.09 16 44 H 0.14 3.54 8.06 -2.91 -0.02 3.52 16 45 H 0.10 4.06 7.89 -2.91 -0.02 4.04 16 46 H 0.08 2.31 7.93 -2.39 -0.02 2.29 16 47 H 0.05 1.74 8.03 -2.39 -0.02 1.72 16 Total: -1.00 -85.81 375.73 2.19 -83.63 By element: Atomic # 1 Polarization: 19.03 SS G_CDS: 0.29 Total: 19.32 kcal Atomic # 6 Polarization: -27.03 SS G_CDS: 4.48 Total: -22.55 kcal Atomic # 7 Polarization: -84.59 SS G_CDS: -2.40 Total: -86.98 kcal Atomic # 8 Polarization: -43.38 SS G_CDS: -2.01 Total: -45.39 kcal Atomic # 14 Polarization: 50.15 SS G_CDS: 1.82 Total: 51.97 kcal Total: -85.81 2.19 -83.63 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356890071.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.624 kcal (2) G-P(sol) polarization free energy of solvation -85.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.628 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds