Wall clock time and date at job start Tue Mar 31 2020 11:48:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52999 * 109.46984 * 2 1 4 4 C 1.53001 * 109.47244 * 300.02254 * 3 2 1 5 5 N 1.46503 * 109.47258 * 185.38392 * 4 3 2 6 6 S 1.65602 * 120.00017 * 163.96374 * 5 4 3 7 7 O 1.42098 * 104.27313 * 181.06931 * 6 5 4 8 8 O 1.42101 * 104.27239 * 308.92477 * 6 5 4 9 9 C 1.81396 * 104.45224 * 64.99692 * 6 5 4 10 10 C 1.52993 * 109.47125 * 179.97438 * 9 6 5 11 11 C 1.53001 * 109.47113 * 179.97438 * 10 9 6 12 12 C 1.50693 * 109.47311 * 180.02562 * 11 10 9 13 13 H 1.07998 * 120.00344 * 359.97438 * 12 11 10 14 14 C 1.37881 * 120.00303 * 180.02562 * 12 11 10 15 15 N 1.31513 * 119.99925 * 359.97438 * 14 12 11 16 16 Si 1.86799 * 120.00190 * 180.02562 * 14 12 11 17 17 H 1.48497 * 109.47346 * 59.99554 * 16 14 12 18 18 H 1.48503 * 109.46937 * 180.02562 * 16 14 12 19 19 H 1.48506 * 109.47092 * 299.99436 * 16 14 12 20 20 C 1.53001 * 109.47119 * 60.02313 * 3 2 1 21 21 C 1.53001 * 109.47111 * 59.99860 * 20 3 2 22 22 C 1.53002 * 109.46846 * 60.00194 * 21 20 3 23 23 C 1.53001 * 109.47107 * 299.99808 * 22 21 20 24 24 C 1.53001 * 109.47111 * 60.00354 * 23 22 21 25 25 H 1.09005 * 109.46927 * 178.86624 * 1 2 3 26 26 H 1.09002 * 109.47461 * 298.86368 * 1 2 3 27 27 H 1.09001 * 109.47189 * 58.86602 * 1 2 3 28 28 H 1.08998 * 109.47110 * 240.00508 * 2 1 3 29 29 H 1.08993 * 109.47496 * 119.99995 * 2 1 3 30 30 H 1.09001 * 109.46940 * 305.38355 * 4 3 2 31 31 H 1.09001 * 109.47247 * 65.38056 * 4 3 2 32 32 H 0.96997 * 119.99826 * 343.95919 * 5 4 3 33 33 H 1.09002 * 109.47015 * 300.00321 * 9 6 5 34 34 H 1.09004 * 109.47046 * 59.99521 * 9 6 5 35 35 H 1.08992 * 109.47445 * 300.00098 * 10 9 6 36 36 H 1.09005 * 109.47107 * 60.00332 * 10 9 6 37 37 H 1.09002 * 109.47117 * 300.00522 * 11 10 9 38 38 H 1.09001 * 109.47194 * 60.00462 * 11 10 9 39 39 H 0.96998 * 120.00213 * 179.97438 * 15 14 12 40 40 H 1.09002 * 109.47034 * 299.99457 * 20 3 2 41 41 H 1.08997 * 109.47107 * 179.97438 * 20 3 2 42 42 H 1.08997 * 109.47146 * 299.99990 * 21 20 3 43 43 H 1.08997 * 109.47091 * 179.97438 * 21 20 3 44 44 H 1.08997 * 109.47415 * 59.99960 * 22 21 20 45 45 H 1.09005 * 109.47055 * 180.02562 * 22 21 20 46 46 H 1.09002 * 109.47034 * 180.02562 * 23 22 21 47 47 H 1.08997 * 109.47107 * 300.00341 * 23 22 21 48 48 H 1.08997 * 109.47146 * 60.00010 * 24 23 22 49 49 H 1.08997 * 109.47091 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 1.5294 2.1639 -1.2490 5 7 2.1207 3.5027 -1.3156 6 16 2.0748 4.3586 -2.7325 7 8 2.7513 5.5714 -2.4313 8 8 2.5864 3.4560 -3.7036 9 6 0.3103 4.6677 -3.0178 10 6 0.1347 5.4616 -4.3138 11 6 -1.3537 5.7218 -4.5547 12 6 -1.5267 6.5033 -5.8315 13 1 -0.6617 6.7865 -6.4129 14 6 -2.7894 6.8577 -6.2572 15 7 -3.8428 6.5134 -5.5491 16 14 -3.0040 7.8258 -7.8403 17 1 -2.4480 7.0471 -8.9759 18 1 -4.4485 8.0795 -8.0734 19 1 -2.2861 9.1211 -7.7296 20 6 1.5304 2.1636 1.2495 21 6 2.0408 1.4421 2.4985 22 6 3.5709 1.4422 2.4979 23 6 4.0804 0.7212 1.2483 24 6 3.5699 1.4426 -0.0006 25 1 -0.3633 -1.0275 -0.0203 26 1 -0.3634 0.4961 0.9000 27 1 -0.3633 0.5313 -0.8796 28 1 1.8933 -0.5137 -0.8900 29 1 1.8933 -0.5138 0.8899 30 1 1.8116 1.5976 -2.1365 31 1 0.4437 2.2481 -1.2017 32 1 2.5389 3.8878 -0.5297 33 1 -0.2166 3.7170 -3.0994 34 1 -0.0979 5.2389 -2.1840 35 1 0.6615 6.4123 -4.2318 36 1 0.5430 4.8907 -5.1478 37 1 -1.8801 4.7709 -4.6369 38 1 -1.7624 6.2925 -3.7209 39 1 -4.7311 6.7630 -5.8483 40 1 0.4403 2.1636 1.2499 41 1 1.8940 3.1911 1.2498 42 1 1.6775 0.4145 2.4985 43 1 1.6782 1.9561 3.3887 44 1 3.9342 2.4699 2.4979 45 1 3.9346 0.9279 3.3875 46 1 5.1704 0.7208 1.2482 47 1 3.7171 -0.3065 1.2483 48 1 3.9333 2.4702 -0.0006 49 1 3.9326 0.9286 -0.8908 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358195979.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:48:43 Heat of formation + Delta-G solvation = -121.523461 kcal Electronic energy + Delta-G solvation = -25707.192115 eV Core-core repulsion = 22180.446693 eV Total energy + Delta-G solvation = -3526.745421 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.181 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.30801 -36.86257 -35.73568 -35.25471 -34.66136 -33.33055 -32.18195 -31.12474 -29.41807 -27.79740 -25.81938 -23.93122 -23.71436 -22.73555 -21.46823 -20.62875 -19.15435 -18.33940 -17.43671 -16.86880 -16.50349 -15.74033 -15.49873 -15.26357 -15.09401 -14.52539 -14.49117 -14.26954 -14.05853 -14.03348 -13.55288 -12.89625 -12.59820 -12.56485 -12.36143 -12.29184 -12.13428 -11.92834 -11.84876 -11.78392 -11.74999 -11.67384 -11.40822 -11.26590 -11.20442 -10.91059 -10.89499 -10.86611 -10.44008 -10.34165 -10.28080 -10.18265 -9.94284 -9.61276 -9.29994 -9.06480 -8.40283 -6.05483 -4.08546 0.50415 2.90192 3.32327 3.36086 3.39396 3.97086 4.24984 4.31151 4.36621 4.42716 4.49590 4.76265 4.86099 4.88625 4.93290 5.02894 5.11193 5.16856 5.21209 5.23666 5.29044 5.30917 5.32492 5.39448 5.48179 5.53598 5.60391 5.66549 5.74412 5.79434 5.80932 5.87188 5.90194 5.91640 5.96611 6.04459 6.07448 6.19723 6.27152 6.28834 6.45791 6.87532 6.94980 7.56954 7.67229 7.92501 8.33173 8.97500 9.56078 11.05736 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.022766 B = 0.002754 C = 0.002603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1229.592071 B =10166.227295 C =10754.936432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.116 4.116 3 C -0.060 4.060 4 C 0.120 3.880 5 N -1.123 6.123 6 S 2.601 3.399 7 O -0.965 6.965 8 O -0.963 6.963 9 C -0.609 4.609 10 C -0.106 4.106 11 C 0.031 3.969 12 C -0.527 4.527 13 H 0.057 0.943 14 C 0.058 3.942 15 N -0.896 5.896 16 Si 0.895 3.105 17 H -0.276 1.276 18 H -0.287 1.287 19 H -0.276 1.276 20 C -0.113 4.113 21 C -0.120 4.120 22 C -0.120 4.120 23 C -0.121 4.121 24 C -0.110 4.110 25 H 0.053 0.947 26 H 0.058 0.942 27 H 0.060 0.940 28 H 0.065 0.935 29 H 0.072 0.928 30 H 0.081 0.919 31 H 0.068 0.932 32 H 0.413 0.587 33 H 0.126 0.874 34 H 0.128 0.872 35 H 0.065 0.935 36 H 0.065 0.935 37 H 0.020 0.980 38 H 0.020 0.980 39 H 0.262 0.738 40 H 0.070 0.930 41 H 0.063 0.937 42 H 0.065 0.935 43 H 0.059 0.941 44 H 0.061 0.939 45 H 0.058 0.942 46 H 0.059 0.941 47 H 0.064 0.936 48 H 0.065 0.935 49 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.016 -14.342 17.899 25.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.154 4.154 3 C -0.061 4.061 4 C -0.006 4.006 5 N -0.882 5.882 6 S 2.696 3.304 7 O -0.956 6.956 8 O -0.953 6.953 9 C -0.741 4.741 10 C -0.145 4.145 11 C -0.007 4.007 12 C -0.565 4.565 13 H 0.076 0.924 14 C -0.144 4.144 15 N -0.535 5.535 16 Si 0.722 3.278 17 H -0.201 1.201 18 H -0.212 1.212 19 H -0.201 1.201 20 C -0.151 4.151 21 C -0.158 4.158 22 C -0.158 4.158 23 C -0.159 4.159 24 C -0.148 4.148 25 H 0.072 0.928 26 H 0.077 0.923 27 H 0.079 0.921 28 H 0.083 0.917 29 H 0.090 0.910 30 H 0.099 0.901 31 H 0.086 0.914 32 H 0.248 0.752 33 H 0.144 0.856 34 H 0.147 0.853 35 H 0.084 0.916 36 H 0.084 0.916 37 H 0.039 0.961 38 H 0.038 0.962 39 H 0.072 0.928 40 H 0.088 0.912 41 H 0.082 0.918 42 H 0.084 0.916 43 H 0.078 0.922 44 H 0.079 0.921 45 H 0.076 0.924 46 H 0.078 0.922 47 H 0.083 0.917 48 H 0.084 0.916 49 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 12.516 -14.179 17.235 25.587 hybrid contribution -0.808 0.633 -0.251 1.056 sum 11.708 -13.546 16.984 24.678 Atomic orbital electron populations 1.21936 0.95708 1.01793 1.02392 1.21651 0.96068 0.95086 1.02550 1.20716 0.95721 0.95490 0.94207 1.21478 0.97379 0.82444 0.99283 1.55720 1.74238 1.27245 1.30985 1.05263 0.78331 0.73581 0.73189 1.93574 1.72205 1.46460 1.83338 1.93563 1.77466 1.64238 1.59989 1.30542 1.23490 1.10641 1.09412 1.21496 1.04149 0.97885 0.91016 1.19051 0.87417 0.97192 0.97040 1.21222 0.92552 1.35135 1.07616 0.92427 1.25018 0.95992 0.96049 0.97291 1.69945 0.98263 1.46524 1.38737 0.86614 0.76961 0.80559 0.83646 1.20106 1.21246 1.20119 1.21668 1.00882 0.99056 0.93482 1.21566 0.95608 1.00988 0.97612 1.21545 0.95798 1.00784 0.97654 1.21586 1.00064 0.99620 0.94596 1.21592 0.94020 1.01210 0.97983 0.92793 0.92284 0.92147 0.91666 0.90969 0.90064 0.91351 0.75217 0.85578 0.85332 0.91611 0.91599 0.96149 0.96151 0.92844 0.91174 0.91816 0.91638 0.92196 0.92056 0.92355 0.92199 0.91723 0.91591 0.91544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.11 9.21 37.15 0.34 -0.77 16 2 C -0.12 -0.79 4.30 -26.73 -0.11 -0.91 16 3 C -0.06 -0.46 0.31 -154.51 -0.05 -0.50 16 4 C 0.12 1.12 4.52 -4.04 -0.02 1.10 16 5 N -1.12 -11.85 5.19 -10.61 -0.06 -11.91 16 6 S 2.60 37.99 5.46 -107.50 -0.59 37.41 16 7 O -0.97 -17.01 18.08 -57.54 -1.04 -18.05 16 8 O -0.96 -16.87 17.48 -57.54 -1.01 -17.88 16 9 C -0.61 -9.33 6.07 37.15 0.23 -9.11 16 10 C -0.11 -2.16 5.16 -26.73 -0.14 -2.30 16 11 C 0.03 0.79 4.97 -27.89 -0.14 0.66 16 12 C -0.53 -14.91 9.11 -34.44 -0.31 -15.22 16 13 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 14 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 15 N -0.90 -26.63 13.29 55.43 0.74 -25.89 16 16 Si 0.89 21.65 29.54 -169.99 -5.02 16.63 16 17 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 18 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 19 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 20 C -0.11 -0.81 4.25 -26.73 -0.11 -0.92 16 21 C -0.12 -0.77 5.65 -26.73 -0.15 -0.92 16 22 C -0.12 -0.77 5.92 -26.73 -0.16 -0.93 16 23 C -0.12 -0.82 5.65 -26.73 -0.15 -0.97 16 24 C -0.11 -0.88 4.50 -26.73 -0.12 -1.00 16 25 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 26 H 0.06 0.39 6.49 -51.93 -0.34 0.05 16 27 H 0.06 0.44 6.49 -51.93 -0.34 0.11 16 28 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.07 0.45 4.81 -51.93 -0.25 0.20 16 30 H 0.08 0.81 7.67 -51.93 -0.40 0.41 16 31 H 0.07 0.56 6.70 -51.93 -0.35 0.22 16 32 H 0.41 3.74 6.46 -34.47 -0.22 3.52 16 33 H 0.13 1.71 8.14 -51.92 -0.42 1.28 16 34 H 0.13 1.77 8.14 -51.92 -0.42 1.34 16 35 H 0.07 1.32 8.14 -51.93 -0.42 0.89 16 36 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 37 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 40 H 0.07 0.49 6.46 -51.93 -0.34 0.16 16 41 H 0.06 0.46 6.91 -51.93 -0.36 0.11 16 42 H 0.06 0.40 6.43 -51.93 -0.33 0.07 16 43 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 44 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 45 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 46 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 47 H 0.06 0.41 6.43 -51.93 -0.33 0.08 16 48 H 0.07 0.56 6.89 -51.93 -0.36 0.20 16 49 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 379.07 15.07 5.71 5.71 Total: -1.00 -34.17 379.07 -10.90 -45.07 By element: Atomic # 1 Polarization: 7.78 SS G_CDS: -8.65 Total: -0.87 kcal Atomic # 6 Polarization: -29.23 SS G_CDS: -0.99 Total: -30.22 kcal Atomic # 7 Polarization: -38.48 SS G_CDS: 0.68 Total: -37.80 kcal Atomic # 8 Polarization: -33.88 SS G_CDS: -2.05 Total: -35.93 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Atomic # 16 Polarization: 37.99 SS G_CDS: -0.59 Total: 37.41 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -34.17 -10.90 -45.07 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358195979.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.449 kcal (2) G-P(sol) polarization free energy of solvation -34.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.074 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds