Wall clock time and date at job start Tue Mar 31 2020 11:48:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52999 * 109.46984 * 2 1 4 4 C 1.53001 * 109.47244 * 300.02254 * 3 2 1 5 5 N 1.46503 * 109.47258 * 185.38392 * 4 3 2 6 6 S 1.65602 * 120.00017 * 163.96374 * 5 4 3 7 7 O 1.42098 * 104.27313 * 181.06931 * 6 5 4 8 8 O 1.42101 * 104.27239 * 308.92477 * 6 5 4 9 9 C 1.81396 * 104.45224 * 64.99692 * 6 5 4 10 10 C 1.52993 * 109.47125 * 179.97438 * 9 6 5 11 11 C 1.53001 * 109.47113 * 179.97438 * 10 9 6 12 12 C 1.50693 * 109.47311 * 180.02562 * 11 10 9 13 13 H 1.07998 * 120.00344 * 359.97438 * 12 11 10 14 14 C 1.37881 * 120.00303 * 180.02562 * 12 11 10 15 15 N 1.31513 * 119.99925 * 359.97438 * 14 12 11 16 16 Si 1.86799 * 120.00190 * 180.02562 * 14 12 11 17 17 H 1.48497 * 109.47346 * 59.99554 * 16 14 12 18 18 H 1.48503 * 109.46937 * 180.02562 * 16 14 12 19 19 H 1.48506 * 109.47092 * 299.99436 * 16 14 12 20 20 C 1.53001 * 109.47119 * 60.02313 * 3 2 1 21 21 C 1.53001 * 109.47111 * 59.99860 * 20 3 2 22 22 C 1.53002 * 109.46846 * 60.00194 * 21 20 3 23 23 C 1.53001 * 109.47107 * 299.99808 * 22 21 20 24 24 C 1.53001 * 109.47111 * 60.00354 * 23 22 21 25 25 H 1.09005 * 109.46927 * 178.86624 * 1 2 3 26 26 H 1.09002 * 109.47461 * 298.86368 * 1 2 3 27 27 H 1.09001 * 109.47189 * 58.86602 * 1 2 3 28 28 H 1.08998 * 109.47110 * 240.00508 * 2 1 3 29 29 H 1.08993 * 109.47496 * 119.99995 * 2 1 3 30 30 H 1.09001 * 109.46940 * 305.38355 * 4 3 2 31 31 H 1.09001 * 109.47247 * 65.38056 * 4 3 2 32 32 H 0.96997 * 119.99826 * 343.95919 * 5 4 3 33 33 H 1.09002 * 109.47015 * 300.00321 * 9 6 5 34 34 H 1.09004 * 109.47046 * 59.99521 * 9 6 5 35 35 H 1.08992 * 109.47445 * 300.00098 * 10 9 6 36 36 H 1.09005 * 109.47107 * 60.00332 * 10 9 6 37 37 H 1.09002 * 109.47117 * 300.00522 * 11 10 9 38 38 H 1.09001 * 109.47194 * 60.00462 * 11 10 9 39 39 H 0.96998 * 120.00213 * 179.97438 * 15 14 12 40 40 H 1.09002 * 109.47034 * 299.99457 * 20 3 2 41 41 H 1.08997 * 109.47107 * 179.97438 * 20 3 2 42 42 H 1.08997 * 109.47146 * 299.99990 * 21 20 3 43 43 H 1.08997 * 109.47091 * 179.97438 * 21 20 3 44 44 H 1.08997 * 109.47415 * 59.99960 * 22 21 20 45 45 H 1.09005 * 109.47055 * 180.02562 * 22 21 20 46 46 H 1.09002 * 109.47034 * 180.02562 * 23 22 21 47 47 H 1.08997 * 109.47107 * 300.00341 * 23 22 21 48 48 H 1.08997 * 109.47146 * 60.00010 * 24 23 22 49 49 H 1.08997 * 109.47091 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 1.5294 2.1639 -1.2490 5 7 2.1207 3.5027 -1.3156 6 16 2.0748 4.3586 -2.7325 7 8 2.7513 5.5714 -2.4313 8 8 2.5864 3.4560 -3.7036 9 6 0.3103 4.6677 -3.0178 10 6 0.1347 5.4616 -4.3138 11 6 -1.3537 5.7218 -4.5547 12 6 -1.5267 6.5033 -5.8315 13 1 -0.6617 6.7865 -6.4129 14 6 -2.7894 6.8577 -6.2572 15 7 -3.8428 6.5134 -5.5491 16 14 -3.0040 7.8258 -7.8403 17 1 -2.4480 7.0471 -8.9759 18 1 -4.4485 8.0795 -8.0734 19 1 -2.2861 9.1211 -7.7296 20 6 1.5304 2.1636 1.2495 21 6 2.0408 1.4421 2.4985 22 6 3.5709 1.4422 2.4979 23 6 4.0804 0.7212 1.2483 24 6 3.5699 1.4426 -0.0006 25 1 -0.3633 -1.0275 -0.0203 26 1 -0.3634 0.4961 0.9000 27 1 -0.3633 0.5313 -0.8796 28 1 1.8933 -0.5137 -0.8900 29 1 1.8933 -0.5138 0.8899 30 1 1.8116 1.5976 -2.1365 31 1 0.4437 2.2481 -1.2017 32 1 2.5389 3.8878 -0.5297 33 1 -0.2166 3.7170 -3.0994 34 1 -0.0979 5.2389 -2.1840 35 1 0.6615 6.4123 -4.2318 36 1 0.5430 4.8907 -5.1478 37 1 -1.8801 4.7709 -4.6369 38 1 -1.7624 6.2925 -3.7209 39 1 -4.7311 6.7630 -5.8483 40 1 0.4403 2.1636 1.2499 41 1 1.8940 3.1911 1.2498 42 1 1.6775 0.4145 2.4985 43 1 1.6782 1.9561 3.3887 44 1 3.9342 2.4699 2.4979 45 1 3.9346 0.9279 3.3875 46 1 5.1704 0.7208 1.2482 47 1 3.7171 -0.3065 1.2483 48 1 3.9333 2.4702 -0.0006 49 1 3.9326 0.9286 -0.8908 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358195979.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:48:42 Heat of formation + Delta-G solvation = -143.370372 kcal Electronic energy + Delta-G solvation = -25708.139468 eV Core-core repulsion = 22180.446693 eV Total energy + Delta-G solvation = -3527.692775 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.181 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.91555 -38.17899 -37.05278 -36.46866 -36.02105 -34.16666 -33.97914 -31.68388 -30.03622 -29.64418 -26.54945 -25.62103 -24.49080 -23.30103 -22.45744 -21.98557 -20.32226 -18.95706 -18.69552 -18.45763 -17.68965 -17.14840 -16.60426 -16.45577 -15.91539 -15.88610 -15.55589 -15.00495 -14.95269 -14.78039 -14.48112 -14.13883 -14.06619 -13.54664 -13.43594 -13.27112 -13.19106 -13.12263 -13.04295 -12.96758 -12.82352 -12.73363 -12.65902 -12.57391 -12.24337 -12.15315 -12.00551 -11.81030 -11.75022 -11.46824 -11.39171 -11.12549 -10.89623 -10.88060 -10.73726 -10.57381 -10.23773 -8.22967 -6.34026 -0.72129 1.39875 1.42407 1.50346 1.81612 2.39583 2.76301 3.10475 3.23986 3.62665 3.72473 3.75862 3.83115 3.94746 4.21592 4.27703 4.30540 4.35369 4.39647 4.48332 4.54297 4.60076 4.65633 4.70053 4.73436 4.79916 4.88366 4.91305 4.95980 5.00478 5.04787 5.06850 5.20473 5.24558 5.27836 5.33876 5.34174 5.42648 5.44763 5.49119 5.50399 5.62653 5.63444 5.73615 5.79006 6.12016 6.19473 6.81359 7.35225 8.88331 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.022766 B = 0.002754 C = 0.002603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1229.592071 B =10166.227295 C =10754.936432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.113 4.113 3 C -0.054 4.054 4 C 0.109 3.891 5 N -1.106 6.106 6 S 2.630 3.370 7 O -0.994 6.994 8 O -0.991 6.991 9 C -0.609 4.609 10 C -0.107 4.107 11 C 0.032 3.968 12 C -0.554 4.554 13 H 0.060 0.940 14 C 0.003 3.997 15 N -0.929 5.929 16 Si 0.962 3.038 17 H -0.267 1.267 18 H -0.281 1.281 19 H -0.268 1.268 20 C -0.115 4.115 21 C -0.118 4.118 22 C -0.120 4.120 23 C -0.118 4.118 24 C -0.114 4.114 25 H 0.057 0.943 26 H 0.063 0.937 27 H 0.053 0.947 28 H 0.062 0.938 29 H 0.082 0.918 30 H 0.074 0.926 31 H 0.083 0.917 32 H 0.423 0.577 33 H 0.145 0.855 34 H 0.146 0.854 35 H 0.064 0.936 36 H 0.065 0.935 37 H 0.004 0.996 38 H 0.003 0.997 39 H 0.265 0.735 40 H 0.073 0.927 41 H 0.061 0.939 42 H 0.070 0.930 43 H 0.063 0.937 44 H 0.056 0.944 45 H 0.066 0.934 46 H 0.060 0.940 47 H 0.070 0.930 48 H 0.058 0.942 49 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.305 -14.889 18.633 26.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.150 4.150 3 C -0.056 4.056 4 C -0.016 4.016 5 N -0.869 5.869 6 S 2.725 3.275 7 O -0.985 6.985 8 O -0.980 6.980 9 C -0.740 4.740 10 C -0.146 4.146 11 C -0.006 4.006 12 C -0.592 4.592 13 H 0.078 0.922 14 C -0.195 4.195 15 N -0.569 5.569 16 Si 0.787 3.213 17 H -0.192 1.192 18 H -0.206 1.206 19 H -0.193 1.193 20 C -0.152 4.152 21 C -0.155 4.155 22 C -0.157 4.157 23 C -0.156 4.156 24 C -0.152 4.152 25 H 0.076 0.924 26 H 0.082 0.918 27 H 0.072 0.928 28 H 0.080 0.920 29 H 0.100 0.900 30 H 0.093 0.907 31 H 0.101 0.899 32 H 0.260 0.740 33 H 0.163 0.837 34 H 0.164 0.836 35 H 0.083 0.917 36 H 0.084 0.916 37 H 0.022 0.978 38 H 0.021 0.979 39 H 0.074 0.926 40 H 0.092 0.908 41 H 0.080 0.920 42 H 0.089 0.911 43 H 0.082 0.918 44 H 0.075 0.925 45 H 0.084 0.916 46 H 0.079 0.921 47 H 0.089 0.911 48 H 0.077 0.923 49 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 12.814 -14.720 17.972 26.530 hybrid contribution -0.893 0.748 -0.421 1.239 sum 11.921 -13.972 17.550 25.403 Atomic orbital electron populations 1.21948 0.95599 1.02072 1.02319 1.21634 0.96105 0.94420 1.02889 1.20682 0.95445 0.95878 0.93587 1.21749 0.98302 0.81528 1.00061 1.55309 1.74147 1.27373 1.30037 1.04169 0.77284 0.72708 0.73324 1.93529 1.72821 1.48174 1.83950 1.93528 1.77856 1.64885 1.61765 1.30500 1.24963 1.11143 1.07404 1.21313 1.00599 0.98890 0.93820 1.18946 0.90561 0.95622 0.95474 1.21720 0.92958 1.35663 1.08891 0.92220 1.25928 0.95688 0.97040 1.00832 1.70058 0.98754 1.47598 1.40515 0.85544 0.77202 0.79220 0.79385 1.19215 1.20569 1.19267 1.21692 1.01100 0.98958 0.93495 1.21550 0.95459 1.01214 0.97285 1.21543 0.95890 1.00562 0.97726 1.21564 1.00129 0.99797 0.94085 1.21616 0.94317 1.00873 0.98350 0.92387 0.91810 0.92765 0.91970 0.90009 0.90717 0.89895 0.73982 0.83679 0.83582 0.91681 0.91587 0.97804 0.97909 0.92603 0.90848 0.92040 0.91116 0.91792 0.92522 0.91571 0.92139 0.91099 0.92289 0.92426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.95 9.21 71.98 0.66 -1.28 16 2 C -0.11 -1.35 4.30 30.59 0.13 -1.22 16 3 C -0.05 -0.74 0.31 -52.18 -0.02 -0.76 16 4 C 0.11 1.88 4.52 86.38 0.39 2.27 16 5 N -1.11 -21.95 5.19 -187.48 -0.97 -22.92 16 6 S 2.63 74.80 5.46 -56.49 -0.31 74.49 16 7 O -0.99 -34.43 18.08 -127.65 -2.31 -36.74 16 8 O -0.99 -34.21 17.48 -127.65 -2.23 -36.45 16 9 C -0.61 -18.13 6.07 71.98 0.44 -17.69 16 10 C -0.11 -4.37 5.16 30.59 0.16 -4.21 16 11 C 0.03 1.66 4.97 29.85 0.15 1.81 16 12 C -0.55 -31.67 9.11 25.60 0.23 -31.44 16 13 H 0.06 3.29 7.74 -2.91 -0.02 3.26 16 14 C 0.00 0.20 5.46 84.66 0.46 0.66 16 15 N -0.93 -55.76 13.29 21.45 0.28 -55.47 16 16 Si 0.96 44.26 29.54 68.60 2.03 46.28 16 17 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 18 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 19 H -0.27 -11.89 7.11 99.48 0.71 -11.19 16 20 C -0.11 -1.41 4.25 30.59 0.13 -1.28 16 21 C -0.12 -1.24 5.65 30.60 0.17 -1.07 16 22 C -0.12 -1.31 5.92 30.60 0.18 -1.13 16 23 C -0.12 -1.41 5.65 30.59 0.17 -1.23 16 24 C -0.11 -1.69 4.50 30.60 0.14 -1.55 16 25 H 0.06 0.65 8.14 -2.38 -0.02 0.63 16 26 H 0.06 0.70 6.49 -2.39 -0.02 0.69 16 27 H 0.05 0.71 6.49 -2.39 -0.02 0.70 16 28 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 29 H 0.08 0.84 4.81 -2.39 -0.01 0.83 16 30 H 0.07 1.42 7.67 -2.39 -0.02 1.40 16 31 H 0.08 1.21 6.70 -2.39 -0.02 1.20 16 32 H 0.42 7.07 6.46 -96.75 -0.63 6.44 16 33 H 0.15 3.74 8.14 -2.39 -0.02 3.72 16 34 H 0.15 3.82 8.14 -2.39 -0.02 3.81 16 35 H 0.06 2.62 8.14 -2.39 -0.02 2.60 16 36 H 0.07 2.65 8.14 -2.38 -0.02 2.63 16 37 H 0.00 0.19 8.14 -2.39 -0.02 0.17 16 38 H 0.00 0.14 8.14 -2.39 -0.02 0.12 16 39 H 0.27 14.94 8.31 -92.71 -0.77 14.17 16 40 H 0.07 0.87 6.46 -2.39 -0.02 0.85 16 41 H 0.06 0.78 6.91 -2.39 -0.02 0.77 16 42 H 0.07 0.69 6.43 -2.39 -0.02 0.67 16 43 H 0.06 0.64 8.14 -2.39 -0.02 0.63 16 44 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 45 H 0.07 0.64 8.14 -2.38 -0.02 0.62 16 46 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 47 H 0.07 0.76 6.43 -2.39 -0.02 0.74 16 48 H 0.06 0.94 6.89 -2.39 -0.02 0.93 16 49 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 Total: -1.00 -72.64 379.07 0.19 -72.46 By element: Atomic # 1 Polarization: 16.19 SS G_CDS: 0.29 Total: 16.48 kcal Atomic # 6 Polarization: -61.53 SS G_CDS: 3.40 Total: -58.13 kcal Atomic # 7 Polarization: -77.71 SS G_CDS: -0.69 Total: -78.40 kcal Atomic # 8 Polarization: -68.65 SS G_CDS: -4.54 Total: -73.19 kcal Atomic # 14 Polarization: 44.26 SS G_CDS: 2.03 Total: 46.28 kcal Atomic # 16 Polarization: 74.80 SS G_CDS: -0.31 Total: 74.49 kcal Total: -72.64 0.19 -72.46 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358195979.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.914 kcal (2) G-P(sol) polarization free energy of solvation -72.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.457 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds