Wall clock time and date at job start Tue Mar 31 2020 12:48:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50703 * 119.99867 * 2 1 4 4 N 1.46499 * 109.47219 * 124.99709 * 3 2 1 5 5 C 1.46499 * 120.00136 * 269.99493 * 4 3 2 6 6 C 1.50697 * 109.47293 * 270.00491 * 5 4 3 7 7 H 1.07997 * 120.00010 * 359.97438 * 6 5 4 8 8 C 1.37875 * 120.00091 * 180.02562 * 6 5 4 9 9 N 1.31517 * 120.00149 * 359.97438 * 8 6 5 10 10 Si 1.86797 * 120.00247 * 179.97438 * 8 6 5 11 11 H 1.48497 * 109.47226 * 89.99205 * 10 8 6 12 12 H 1.48494 * 109.47051 * 209.99874 * 10 8 6 13 13 H 1.48508 * 109.46947 * 329.99558 * 10 8 6 14 14 C 1.34784 * 119.99971 * 89.99688 * 4 3 2 15 15 O 1.21283 * 119.99649 * 179.97438 * 14 4 3 16 16 C 1.50697 * 119.99774 * 359.72768 * 14 4 3 17 17 O 1.42905 * 109.47007 * 179.97438 * 16 14 4 18 18 C 1.35894 * 117.00317 * 179.97438 * 17 16 14 19 19 C 1.38756 * 120.05156 * 359.72325 * 18 17 16 20 20 C 1.38133 * 119.93901 * 179.70203 * 19 18 17 21 21 C 1.38286 * 120.05645 * 0.59338 * 20 19 18 22 22 C 1.38248 * 120.10887 * 359.68415 * 21 20 19 23 23 C 1.50700 * 119.96653 * 180.02562 * 22 21 20 24 24 C 1.53007 * 109.47420 * 299.97460 * 23 22 21 25 25 C 1.52999 * 109.47340 * 59.98116 * 23 22 21 26 26 C 1.38163 * 120.05774 * 0.02562 * 22 21 20 27 27 H 1.08003 * 120.00239 * 179.97438 * 1 2 3 28 28 H 1.08005 * 120.00211 * 0.02562 * 1 2 3 29 29 H 1.07997 * 119.99875 * 179.97438 * 2 1 3 30 30 H 1.08998 * 109.47074 * 4.99319 * 3 2 1 31 31 H 1.09008 * 109.46468 * 244.99290 * 3 2 1 32 32 H 1.08997 * 109.46865 * 30.00228 * 5 4 3 33 33 H 1.08998 * 109.47058 * 149.99741 * 5 4 3 34 34 H 0.96995 * 120.00744 * 180.02562 * 9 8 6 35 35 H 1.09001 * 109.46809 * 299.99238 * 16 14 4 36 36 H 1.08993 * 109.47525 * 59.99679 * 16 14 4 37 37 H 1.07993 * 120.03389 * 359.97438 * 19 18 17 38 38 H 1.08000 * 119.96929 * 180.29969 * 20 19 18 39 39 H 1.07999 * 119.94618 * 179.69921 * 21 20 19 40 40 H 1.09002 * 109.46926 * 179.97438 * 23 22 21 41 41 H 1.09002 * 109.46575 * 60.00393 * 24 23 22 42 42 H 1.08999 * 109.46894 * 180.02562 * 24 23 22 43 43 H 1.08999 * 109.47296 * 300.00458 * 24 23 22 44 44 H 1.08997 * 109.47371 * 59.99656 * 25 23 22 45 45 H 1.08999 * 109.46894 * 179.97438 * 25 23 22 46 46 H 1.09002 * 109.46616 * 299.99587 * 25 23 22 47 47 H 1.08004 * 120.02627 * 180.02562 * 26 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9936 1.3320 1.1314 5 6 2.5587 1.8652 2.4248 6 6 2.8441 3.3438 2.4802 7 1 3.3038 3.8371 1.6366 8 6 2.5192 4.0668 3.6084 9 7 1.9598 3.4661 4.6359 10 14 2.8735 5.8996 3.6774 11 1 1.7009 6.6503 3.1609 12 1 3.1379 6.3000 5.0826 13 1 4.0635 6.2055 2.8433 14 6 4.2496 0.8662 0.9825 15 8 5.0198 0.8889 1.9191 16 6 4.6951 0.3122 -0.3463 17 8 6.0559 -0.1141 -0.2525 18 6 6.6153 -0.6431 -1.3723 19 6 5.8679 -0.7551 -2.5360 20 6 6.4407 -1.2875 -3.6747 21 6 7.7540 -1.7199 -3.6520 22 6 8.4989 -1.6147 -2.4922 23 6 9.9300 -2.0865 -2.4713 24 6 9.9804 -3.5780 -2.8088 25 6 10.7408 -1.3020 -3.5047 26 6 7.9325 -1.0774 -1.3523 27 1 -0.5401 -0.9353 -0.0004 28 1 -0.5401 0.9353 -0.0004 29 1 1.8499 -0.9353 0.0004 30 1 1.3585 2.1316 0.0894 31 1 2.6213 1.4025 -0.9314 32 1 1.4887 1.6969 2.5458 33 1 3.0988 1.3606 3.2259 34 1 1.7308 3.9748 5.4295 35 1 4.0660 -0.5363 -0.6154 36 1 4.6087 1.0852 -1.1097 37 1 4.8407 -0.4222 -2.5528 38 1 5.8609 -1.3704 -4.5821 39 1 8.1986 -2.1404 -4.5420 40 1 10.3517 -1.9240 -1.4793 41 1 9.5588 -3.7404 -3.8008 42 1 11.0155 -3.9192 -2.7932 43 1 9.4028 -4.1369 -2.0725 44 1 10.7050 -0.2395 -3.2642 45 1 11.7760 -1.6430 -3.4892 46 1 10.3192 -1.4645 -4.4966 47 1 8.5150 -0.9950 -0.4466 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000359379282.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:48:11 Heat of formation + Delta-G solvation = -35.905051 kcal Electronic energy + Delta-G solvation = -25904.541206 eV Core-core repulsion = 22246.064526 eV Total energy + Delta-G solvation = -3658.476680 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.40010 -39.16548 -37.80549 -35.73883 -35.03247 -33.25162 -32.14995 -30.98400 -29.51665 -28.79190 -27.39468 -26.92136 -25.45980 -23.54611 -22.67991 -22.50998 -20.29256 -19.97387 -18.63875 -17.83560 -16.64641 -16.57807 -16.25436 -16.01824 -15.53998 -15.38597 -15.02361 -14.66913 -14.32450 -14.17631 -13.90048 -13.67155 -13.66057 -13.09456 -12.98309 -12.60568 -12.50620 -12.37948 -12.14270 -12.03559 -11.77428 -11.49309 -11.46577 -11.32835 -11.15256 -11.00765 -10.92576 -10.85446 -10.75029 -10.62900 -10.20868 -9.68443 -9.27645 -8.99598 -8.92110 -8.45640 -8.21304 -7.79427 -6.06609 -4.11685 1.21947 1.38758 2.35026 2.94733 3.23871 3.29183 3.36362 3.41479 3.66329 4.06556 4.42556 4.48097 4.60703 4.73472 4.87893 4.94697 4.97603 5.02811 5.10810 5.13656 5.23997 5.25089 5.27783 5.34085 5.36074 5.38652 5.45500 5.53837 5.56071 5.67952 5.75216 5.92149 5.93517 5.98144 5.98474 6.09753 6.25097 6.34086 6.49820 6.68136 6.71370 6.82508 6.99038 7.38159 7.39608 7.49323 7.89309 8.18974 8.26589 8.83614 8.98114 9.53380 11.01597 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.015898 B = 0.002752 C = 0.002486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1760.778587 B =10170.431135 C =11260.816889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.174 4.174 3 C 0.133 3.867 4 N -0.589 5.589 5 C 0.249 3.751 6 C -0.529 4.529 7 H 0.058 0.942 8 C 0.062 3.938 9 N -0.894 5.894 10 Si 0.899 3.101 11 H -0.280 1.280 12 H -0.285 1.285 13 H -0.274 1.274 14 C 0.508 3.492 15 O -0.515 6.515 16 C 0.042 3.958 17 O -0.287 6.287 18 C 0.139 3.861 19 C -0.217 4.217 20 C -0.077 4.077 21 C -0.159 4.159 22 C -0.039 4.039 23 C -0.058 4.058 24 C -0.143 4.143 25 C -0.143 4.143 26 C -0.150 4.150 27 H 0.095 0.905 28 H 0.100 0.900 29 H 0.104 0.896 30 H 0.092 0.908 31 H 0.072 0.928 32 H 0.036 0.964 33 H 0.045 0.955 34 H 0.264 0.736 35 H 0.085 0.915 36 H 0.086 0.914 37 H 0.127 0.873 38 H 0.123 0.877 39 H 0.120 0.880 40 H 0.080 0.920 41 H 0.057 0.943 42 H 0.057 0.943 43 H 0.057 0.943 44 H 0.057 0.943 45 H 0.057 0.943 46 H 0.057 0.943 47 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.801 -12.270 -19.586 24.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.193 4.193 3 C 0.009 3.991 4 N -0.322 5.322 5 C 0.130 3.870 6 C -0.568 4.568 7 H 0.076 0.924 8 C -0.140 4.140 9 N -0.532 5.532 10 Si 0.726 3.274 11 H -0.206 1.206 12 H -0.210 1.210 13 H -0.198 1.198 14 C 0.292 3.708 15 O -0.390 6.390 16 C -0.037 4.037 17 O -0.199 6.199 18 C 0.093 3.907 19 C -0.236 4.236 20 C -0.096 4.096 21 C -0.177 4.177 22 C -0.039 4.039 23 C -0.077 4.077 24 C -0.200 4.200 25 C -0.201 4.201 26 C -0.168 4.168 27 H 0.113 0.887 28 H 0.118 0.882 29 H 0.122 0.878 30 H 0.110 0.890 31 H 0.090 0.910 32 H 0.054 0.946 33 H 0.063 0.937 34 H 0.073 0.927 35 H 0.103 0.897 36 H 0.104 0.896 37 H 0.145 0.855 38 H 0.141 0.859 39 H 0.138 0.862 40 H 0.098 0.902 41 H 0.076 0.924 42 H 0.076 0.924 43 H 0.076 0.924 44 H 0.076 0.924 45 H 0.076 0.924 46 H 0.076 0.924 47 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 8.239 -12.169 -18.657 23.750 hybrid contribution -0.286 1.043 -0.090 1.085 sum 7.952 -11.127 -18.748 23.206 Atomic orbital electron populations 1.23839 0.95789 1.01897 0.99950 1.23414 0.96527 0.98874 1.00466 1.20648 0.93311 0.95726 0.89401 1.48171 1.09720 1.60370 1.13984 1.19329 0.95518 0.93834 0.78274 1.21419 1.40746 0.93212 1.01381 0.92391 1.24931 0.95002 0.98843 0.95267 1.69929 1.41921 1.36211 1.05180 0.86487 0.78619 0.84861 0.77420 1.20630 1.21044 1.19840 1.19729 0.82955 0.79550 0.88541 1.90725 1.52155 1.54950 1.41180 1.22705 0.82075 1.00118 0.98812 1.86201 1.26607 1.74874 1.32191 1.19109 0.92827 0.93082 0.85710 1.21280 1.00913 1.07824 0.93587 1.20884 0.94937 0.96413 0.97320 1.20809 0.94561 1.04362 0.97988 1.19611 0.95375 0.96309 0.92610 1.20152 0.91332 0.95568 1.00624 1.21849 1.01726 0.94604 1.01857 1.21850 0.99332 1.00272 0.98610 1.20347 0.93048 1.04000 0.99453 0.88668 0.88155 0.87787 0.88958 0.90998 0.94617 0.93724 0.92656 0.89667 0.89572 0.85484 0.85927 0.86217 0.90187 0.92432 0.92365 0.92409 0.92380 0.92363 0.92430 0.85127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.17 14.32 29.02 0.42 -1.75 16 2 C -0.17 -2.34 9.74 -36.02 -0.35 -2.69 16 3 C 0.13 2.05 5.65 -5.19 -0.03 2.03 16 4 N -0.59 -12.30 2.44 -176.43 -0.43 -12.73 16 5 C 0.25 6.47 5.16 -5.20 -0.03 6.44 16 6 C -0.53 -14.91 9.39 -34.44 -0.32 -15.23 16 7 H 0.06 1.63 7.81 -52.49 -0.41 1.22 16 8 C 0.06 1.76 5.46 -17.82 -0.10 1.67 16 9 N -0.89 -26.51 13.29 55.43 0.74 -25.78 16 10 Si 0.90 21.85 29.54 -169.99 -5.02 16.83 16 11 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 12 H -0.28 -6.89 7.11 56.52 0.40 -6.48 16 13 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 14 C 0.51 10.80 7.75 -10.98 -0.09 10.72 16 15 O -0.52 -13.61 16.08 -14.35 -0.23 -13.84 16 16 C 0.04 0.65 3.78 36.00 0.14 0.79 16 17 O -0.29 -5.01 9.67 -39.31 -0.38 -5.39 16 18 C 0.14 2.00 6.69 -39.22 -0.26 1.74 16 19 C -0.22 -2.57 9.04 -39.43 -0.36 -2.93 16 20 C -0.08 -0.78 10.04 -39.60 -0.40 -1.18 16 21 C -0.16 -1.56 8.71 -39.56 -0.34 -1.90 16 22 C -0.04 -0.42 4.78 -104.65 -0.50 -0.92 16 23 C -0.06 -0.49 3.09 -91.77 -0.28 -0.78 16 24 C -0.14 -1.03 9.01 37.16 0.33 -0.70 16 25 C -0.14 -1.05 9.01 37.16 0.33 -0.72 16 26 C -0.15 -1.97 9.61 -39.44 -0.38 -2.35 16 27 H 0.09 1.00 8.06 -52.48 -0.42 0.58 16 28 H 0.10 1.20 7.84 -52.48 -0.41 0.79 16 29 H 0.10 1.32 7.81 -52.49 -0.41 0.91 16 30 H 0.09 1.47 7.72 -51.93 -0.40 1.07 16 31 H 0.07 0.89 6.44 -51.92 -0.33 0.56 16 32 H 0.04 0.94 8.07 -51.93 -0.42 0.52 16 33 H 0.04 1.32 7.42 -51.93 -0.39 0.93 16 34 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 35 H 0.09 1.09 7.26 -51.93 -0.38 0.71 16 36 H 0.09 1.15 6.93 -51.93 -0.36 0.79 16 37 H 0.13 1.29 6.30 -52.49 -0.33 0.96 16 38 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 39 H 0.12 0.93 7.09 -52.49 -0.37 0.55 16 40 H 0.08 0.68 7.87 -51.93 -0.41 0.27 16 41 H 0.06 0.38 7.39 -51.93 -0.38 0.00 16 42 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 43 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 45 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 46 H 0.06 0.39 7.38 -51.93 -0.38 0.01 16 47 H 0.13 1.69 7.94 -52.48 -0.42 1.28 16 LS Contribution 391.82 15.07 5.90 5.90 Total: -1.00 -33.95 391.82 -9.11 -43.06 By element: Atomic # 1 Polarization: 7.18 SS G_CDS: -7.48 Total: -0.30 kcal Atomic # 6 Polarization: -5.54 SS G_CDS: -2.22 Total: -7.76 kcal Atomic # 7 Polarization: -38.81 SS G_CDS: 0.31 Total: -38.51 kcal Atomic # 8 Polarization: -18.63 SS G_CDS: -0.61 Total: -19.24 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -33.95 -9.11 -43.06 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359379282.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.154 kcal (2) G-P(sol) polarization free energy of solvation -33.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.059 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds