Wall clock time and date at job start Tue Mar 31 2020 12:48:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50703 * 119.99867 * 2 1 4 4 N 1.46499 * 109.47219 * 124.99709 * 3 2 1 5 5 C 1.46499 * 120.00136 * 269.99493 * 4 3 2 6 6 C 1.50697 * 109.47293 * 270.00491 * 5 4 3 7 7 H 1.07997 * 120.00010 * 359.97438 * 6 5 4 8 8 C 1.37875 * 120.00091 * 180.02562 * 6 5 4 9 9 N 1.31517 * 120.00149 * 359.97438 * 8 6 5 10 10 Si 1.86797 * 120.00247 * 179.97438 * 8 6 5 11 11 H 1.48497 * 109.47226 * 89.99205 * 10 8 6 12 12 H 1.48494 * 109.47051 * 209.99874 * 10 8 6 13 13 H 1.48508 * 109.46947 * 329.99558 * 10 8 6 14 14 C 1.34784 * 119.99971 * 89.99688 * 4 3 2 15 15 O 1.21283 * 119.99649 * 179.97438 * 14 4 3 16 16 C 1.50697 * 119.99774 * 359.72768 * 14 4 3 17 17 O 1.42905 * 109.47007 * 179.97438 * 16 14 4 18 18 C 1.35894 * 117.00317 * 179.97438 * 17 16 14 19 19 C 1.38756 * 120.05156 * 359.72325 * 18 17 16 20 20 C 1.38133 * 119.93901 * 179.70203 * 19 18 17 21 21 C 1.38286 * 120.05645 * 0.59338 * 20 19 18 22 22 C 1.38248 * 120.10887 * 359.68415 * 21 20 19 23 23 C 1.50700 * 119.96653 * 180.02562 * 22 21 20 24 24 C 1.53007 * 109.47420 * 299.97460 * 23 22 21 25 25 C 1.52999 * 109.47340 * 59.98116 * 23 22 21 26 26 C 1.38163 * 120.05774 * 0.02562 * 22 21 20 27 27 H 1.08003 * 120.00239 * 179.97438 * 1 2 3 28 28 H 1.08005 * 120.00211 * 0.02562 * 1 2 3 29 29 H 1.07997 * 119.99875 * 179.97438 * 2 1 3 30 30 H 1.08998 * 109.47074 * 4.99319 * 3 2 1 31 31 H 1.09008 * 109.46468 * 244.99290 * 3 2 1 32 32 H 1.08997 * 109.46865 * 30.00228 * 5 4 3 33 33 H 1.08998 * 109.47058 * 149.99741 * 5 4 3 34 34 H 0.96995 * 120.00744 * 180.02562 * 9 8 6 35 35 H 1.09001 * 109.46809 * 299.99238 * 16 14 4 36 36 H 1.08993 * 109.47525 * 59.99679 * 16 14 4 37 37 H 1.07993 * 120.03389 * 359.97438 * 19 18 17 38 38 H 1.08000 * 119.96929 * 180.29969 * 20 19 18 39 39 H 1.07999 * 119.94618 * 179.69921 * 21 20 19 40 40 H 1.09002 * 109.46926 * 179.97438 * 23 22 21 41 41 H 1.09002 * 109.46575 * 60.00393 * 24 23 22 42 42 H 1.08999 * 109.46894 * 180.02562 * 24 23 22 43 43 H 1.08999 * 109.47296 * 300.00458 * 24 23 22 44 44 H 1.08997 * 109.47371 * 59.99656 * 25 23 22 45 45 H 1.08999 * 109.46894 * 179.97438 * 25 23 22 46 46 H 1.09002 * 109.46616 * 299.99587 * 25 23 22 47 47 H 1.08004 * 120.02627 * 180.02562 * 26 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9936 1.3320 1.1314 5 6 2.5587 1.8652 2.4248 6 6 2.8441 3.3438 2.4802 7 1 3.3038 3.8371 1.6366 8 6 2.5192 4.0668 3.6084 9 7 1.9598 3.4661 4.6359 10 14 2.8735 5.8996 3.6774 11 1 1.7009 6.6503 3.1609 12 1 3.1379 6.3000 5.0826 13 1 4.0635 6.2055 2.8433 14 6 4.2496 0.8662 0.9825 15 8 5.0198 0.8889 1.9191 16 6 4.6951 0.3122 -0.3463 17 8 6.0559 -0.1141 -0.2525 18 6 6.6153 -0.6431 -1.3723 19 6 5.8679 -0.7551 -2.5360 20 6 6.4407 -1.2875 -3.6747 21 6 7.7540 -1.7199 -3.6520 22 6 8.4989 -1.6147 -2.4922 23 6 9.9300 -2.0865 -2.4713 24 6 9.9804 -3.5780 -2.8088 25 6 10.7408 -1.3020 -3.5047 26 6 7.9325 -1.0774 -1.3523 27 1 -0.5401 -0.9353 -0.0004 28 1 -0.5401 0.9353 -0.0004 29 1 1.8499 -0.9353 0.0004 30 1 1.3585 2.1316 0.0894 31 1 2.6213 1.4025 -0.9314 32 1 1.4887 1.6969 2.5458 33 1 3.0988 1.3606 3.2259 34 1 1.7308 3.9748 5.4295 35 1 4.0660 -0.5363 -0.6154 36 1 4.6087 1.0852 -1.1097 37 1 4.8407 -0.4222 -2.5528 38 1 5.8609 -1.3704 -4.5821 39 1 8.1986 -2.1404 -4.5420 40 1 10.3517 -1.9240 -1.4793 41 1 9.5588 -3.7404 -3.8008 42 1 11.0155 -3.9192 -2.7932 43 1 9.4028 -4.1369 -2.0725 44 1 10.7050 -0.2395 -3.2642 45 1 11.7760 -1.6430 -3.4892 46 1 10.3192 -1.4645 -4.4966 47 1 8.5150 -0.9950 -0.4466 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000359379282.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:48:09 Heat of formation + Delta-G solvation = -54.247197 kcal Electronic energy + Delta-G solvation = -25905.336581 eV Core-core repulsion = 22246.064526 eV Total energy + Delta-G solvation = -3659.272055 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.52335 -40.56060 -38.90292 -37.29205 -35.80331 -35.14937 -33.72718 -31.98115 -30.66727 -30.06717 -28.50165 -27.95281 -26.92557 -24.98586 -23.86202 -23.55114 -21.37752 -20.95322 -20.11117 -18.90240 -18.61860 -17.97228 -17.43565 -17.33803 -16.84852 -16.60715 -16.13097 -15.93146 -15.80517 -15.43114 -14.83983 -14.51440 -14.45025 -14.43102 -14.22403 -14.16426 -13.76797 -13.38550 -13.30139 -13.04163 -12.98544 -12.90786 -12.86955 -12.59552 -12.35169 -12.30582 -12.24593 -12.14169 -11.82818 -11.70735 -11.67376 -11.49622 -10.72759 -10.66195 -10.34000 -9.76687 -9.57872 -9.15531 -8.24915 -6.39605 0.37785 0.49430 1.25610 1.35193 1.38728 1.48466 1.61012 1.75370 2.35964 2.70296 2.80815 3.05275 3.45790 3.74114 3.80900 3.92615 3.99606 4.04438 4.08938 4.21968 4.24970 4.33377 4.39246 4.39858 4.45136 4.61120 4.67336 4.82064 4.84797 4.94908 5.01659 5.02551 5.04689 5.06232 5.18250 5.22246 5.31299 5.37743 5.41830 5.45772 5.53320 5.68878 5.70289 5.72610 5.87058 5.92155 6.02172 6.38229 6.60480 6.69738 7.20864 7.35538 8.82719 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.015898 B = 0.002752 C = 0.002486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1760.778587 B =10170.431135 C =11260.816889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.189 4.189 3 C 0.128 3.872 4 N -0.591 5.591 5 C 0.265 3.735 6 C -0.545 4.545 7 H 0.055 0.945 8 C 0.008 3.992 9 N -0.927 5.927 10 Si 0.968 3.032 11 H -0.260 1.260 12 H -0.282 1.282 13 H -0.274 1.274 14 C 0.497 3.503 15 O -0.583 6.583 16 C 0.058 3.942 17 O -0.326 6.326 18 C 0.108 3.892 19 C -0.220 4.220 20 C -0.074 4.074 21 C -0.154 4.154 22 C -0.039 4.039 23 C -0.061 4.061 24 C -0.140 4.140 25 C -0.140 4.140 26 C -0.176 4.176 27 H 0.117 0.883 28 H 0.100 0.900 29 H 0.115 0.885 30 H 0.084 0.916 31 H 0.110 0.890 32 H 0.029 0.971 33 H -0.005 1.005 34 H 0.268 0.732 35 H 0.120 0.880 36 H 0.116 0.884 37 H 0.147 0.853 38 H 0.157 0.843 39 H 0.148 0.852 40 H 0.070 0.930 41 H 0.068 0.932 42 H 0.071 0.929 43 H 0.046 0.954 44 H 0.045 0.955 45 H 0.071 0.929 46 H 0.068 0.932 47 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.448 -12.591 -23.431 27.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.208 4.208 3 C 0.006 3.994 4 N -0.322 5.322 5 C 0.144 3.856 6 C -0.583 4.583 7 H 0.073 0.927 8 C -0.191 4.191 9 N -0.567 5.567 10 Si 0.792 3.208 11 H -0.185 1.185 12 H -0.207 1.207 13 H -0.199 1.199 14 C 0.285 3.715 15 O -0.463 6.463 16 C -0.020 4.020 17 O -0.239 6.239 18 C 0.063 3.937 19 C -0.238 4.238 20 C -0.092 4.092 21 C -0.172 4.172 22 C -0.040 4.040 23 C -0.079 4.079 24 C -0.197 4.197 25 C -0.197 4.197 26 C -0.195 4.195 27 H 0.135 0.865 28 H 0.119 0.881 29 H 0.133 0.867 30 H 0.103 0.897 31 H 0.128 0.872 32 H 0.047 0.953 33 H 0.013 0.987 34 H 0.077 0.923 35 H 0.138 0.862 36 H 0.134 0.866 37 H 0.164 0.836 38 H 0.174 0.826 39 H 0.166 0.834 40 H 0.088 0.912 41 H 0.087 0.913 42 H 0.090 0.910 43 H 0.065 0.935 44 H 0.064 0.936 45 H 0.090 0.910 46 H 0.087 0.913 47 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 7.851 -12.506 -22.567 26.968 hybrid contribution -0.171 1.062 1.059 1.510 sum 7.680 -11.444 -21.508 25.544 Atomic orbital electron populations 1.24073 0.95494 1.03005 0.97606 1.23313 0.96910 0.98111 1.02500 1.20968 0.92883 0.96854 0.88687 1.48133 1.10843 1.59540 1.13713 1.18753 0.94145 0.92753 0.79954 1.21694 1.40768 0.94297 1.01568 0.92712 1.25860 0.94611 1.03839 0.94788 1.70049 1.42720 1.38150 1.05785 0.85409 0.78906 0.79017 0.77449 1.18509 1.20699 1.19890 1.20763 0.82204 0.78477 0.90097 1.90681 1.53999 1.57709 1.43946 1.22590 0.82347 1.01949 0.95139 1.86135 1.27289 1.76030 1.34461 1.19376 0.93526 0.94846 0.85924 1.21529 1.01629 1.07656 0.93006 1.21312 0.95184 0.94851 0.97813 1.21193 0.94571 1.03177 0.98282 1.19880 0.96486 0.95443 0.92145 1.20217 0.90213 0.96727 1.00766 1.21830 1.02569 0.93219 1.02053 1.21832 1.00006 0.99314 0.98570 1.20489 0.93221 1.05634 1.00111 0.86511 0.88129 0.86723 0.89732 0.87234 0.95317 0.98665 0.92344 0.86218 0.86602 0.83573 0.82554 0.83437 0.91160 0.91304 0.91031 0.93461 0.93556 0.91016 0.91299 0.86760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.65 14.32 67.79 0.97 -2.68 16 2 C -0.19 -4.74 9.74 25.65 0.25 -4.49 16 3 C 0.13 3.79 5.65 85.63 0.48 4.27 16 4 N -0.59 -25.21 2.44 -830.50 -2.03 -27.24 16 5 C 0.26 14.47 5.16 85.63 0.44 14.91 16 6 C -0.54 -31.69 9.39 25.60 0.24 -31.45 16 7 H 0.05 3.14 7.81 -2.91 -0.02 3.12 16 8 C 0.01 0.48 5.46 84.65 0.46 0.94 16 9 N -0.93 -56.60 13.29 21.45 0.28 -56.32 16 10 Si 0.97 45.33 29.54 68.60 2.03 47.35 16 11 H -0.26 -11.31 7.11 99.48 0.71 -10.60 16 12 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 13 H -0.27 -12.75 7.11 99.48 0.71 -12.05 16 14 C 0.50 21.84 7.75 87.65 0.68 22.52 16 15 O -0.58 -32.95 16.08 16.00 0.26 -32.69 16 16 C 0.06 1.76 3.78 71.24 0.27 2.03 16 17 O -0.33 -11.70 9.67 -73.32 -0.71 -12.41 16 18 C 0.11 3.10 6.69 22.51 0.15 3.25 16 19 C -0.22 -4.65 9.04 22.37 0.20 -4.45 16 20 C -0.07 -1.21 10.04 22.26 0.22 -0.99 16 21 C -0.15 -2.55 8.71 22.28 0.19 -2.36 16 22 C -0.04 -0.81 4.78 -19.88 -0.10 -0.90 16 23 C -0.06 -0.96 3.09 -11.54 -0.04 -1.00 16 24 C -0.14 -1.75 9.01 71.98 0.65 -1.10 16 25 C -0.14 -1.79 9.01 71.98 0.65 -1.14 16 26 C -0.18 -4.78 9.61 22.36 0.21 -4.56 16 27 H 0.12 2.11 8.06 -2.91 -0.02 2.09 16 28 H 0.10 2.23 7.84 -2.91 -0.02 2.21 16 29 H 0.11 2.64 7.81 -2.91 -0.02 2.62 16 30 H 0.08 2.63 7.72 -2.39 -0.02 2.62 16 31 H 0.11 2.39 6.44 -2.38 -0.02 2.37 16 32 H 0.03 1.58 8.07 -2.39 -0.02 1.56 16 33 H 0.00 -0.31 7.42 -2.39 -0.02 -0.32 16 34 H 0.27 15.29 8.31 -92.71 -0.77 14.52 16 35 H 0.12 2.79 7.26 -2.39 -0.02 2.78 16 36 H 0.12 2.81 6.93 -2.39 -0.02 2.80 16 37 H 0.15 2.41 6.30 -2.91 -0.02 2.39 16 38 H 0.16 1.52 8.06 -2.91 -0.02 1.50 16 39 H 0.15 1.61 7.09 -2.91 -0.02 1.59 16 40 H 0.07 1.23 7.87 -2.39 -0.02 1.21 16 41 H 0.07 0.71 7.39 -2.39 -0.02 0.69 16 42 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 43 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 44 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 45 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 46 H 0.07 0.72 7.38 -2.39 -0.02 0.70 16 47 H 0.11 3.30 7.94 -2.91 -0.02 3.28 16 Total: -1.00 -79.67 391.82 6.72 -72.95 By element: Atomic # 1 Polarization: 14.61 SS G_CDS: 0.94 Total: 15.55 kcal Atomic # 6 Polarization: -13.14 SS G_CDS: 5.95 Total: -7.19 kcal Atomic # 7 Polarization: -81.82 SS G_CDS: -1.74 Total: -83.56 kcal Atomic # 8 Polarization: -44.65 SS G_CDS: -0.45 Total: -45.10 kcal Atomic # 14 Polarization: 45.33 SS G_CDS: 2.03 Total: 47.35 kcal Total: -79.67 6.72 -72.95 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359379282.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.701 kcal (2) G-P(sol) polarization free energy of solvation -79.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.949 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds