Wall clock time and date at job start Tue Mar 31 2020 13:38:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.47304 * 2 1 4 4 C 1.52994 * 109.47462 * 179.97438 * 3 2 1 5 5 C 1.52998 * 109.47149 * 179.97438 * 4 3 2 6 6 C 1.52998 * 109.47225 * 174.96444 * 5 4 3 7 7 H 1.09000 * 109.87538 * 304.14410 * 6 5 4 8 8 C 1.54322 * 109.88130 * 65.31746 * 6 5 4 9 9 C 1.55157 * 102.94223 * 141.61108 * 8 6 5 10 10 C 1.54907 * 101.58315 * 324.49851 * 9 8 6 11 11 N 1.47017 * 109.88391 * 183.12420 * 6 5 4 12 12 S 1.65606 * 125.64537 * 61.68067 * 11 6 5 13 13 O 1.42104 * 104.27422 * 212.22674 * 12 11 6 14 14 O 1.42093 * 104.27914 * 340.08148 * 12 11 6 15 15 C 1.81398 * 104.45132 * 96.15896 * 12 11 6 16 16 C 1.52999 * 109.47351 * 180.02562 * 15 12 11 17 17 C 1.52998 * 109.47521 * 179.97438 * 16 15 12 18 18 C 1.50698 * 109.47083 * 179.97438 * 17 16 15 19 19 H 1.07993 * 119.99954 * 0.02562 * 18 17 16 20 20 C 1.37884 * 119.99476 * 179.97438 * 18 17 16 21 21 N 1.31512 * 119.99769 * 179.97438 * 20 18 17 22 22 Si 1.86796 * 120.00229 * 0.02562 * 20 18 17 23 23 H 1.48500 * 109.47140 * 89.99695 * 22 20 18 24 24 H 1.48500 * 109.47066 * 209.99850 * 22 20 18 25 25 H 1.48504 * 109.47199 * 329.99467 * 22 20 18 26 26 H 1.09001 * 109.47208 * 60.00382 * 1 2 3 27 27 H 1.09007 * 109.46581 * 180.02562 * 1 2 3 28 28 H 1.08991 * 109.47633 * 300.00077 * 1 2 3 29 29 H 1.09002 * 109.47627 * 239.99397 * 2 1 3 30 30 H 1.09009 * 109.47063 * 119.99924 * 2 1 3 31 31 H 1.09001 * 109.46812 * 59.99449 * 3 2 1 32 32 H 1.09001 * 109.46676 * 299.99944 * 3 2 1 33 33 H 1.09001 * 109.47284 * 60.00073 * 4 3 2 34 34 H 1.09001 * 109.47402 * 299.99833 * 4 3 2 35 35 H 1.08993 * 109.47137 * 294.96598 * 5 4 3 36 36 H 1.09000 * 109.46939 * 54.96792 * 5 4 3 37 37 H 1.09001 * 110.71900 * 259.97307 * 8 6 5 38 38 H 1.08998 * 110.72268 * 23.24891 * 8 6 5 39 39 H 1.08997 * 111.00524 * 206.41801 * 9 8 6 40 40 H 1.09007 * 111.03838 * 82.58494 * 9 8 6 41 41 H 1.09003 * 110.36322 * 278.17131 * 10 9 8 42 42 H 1.08993 * 110.36542 * 155.84807 * 10 9 8 43 43 H 1.09006 * 109.47034 * 299.99763 * 15 12 11 44 44 H 1.09006 * 109.47324 * 59.99661 * 15 12 11 45 45 H 1.09006 * 109.46827 * 299.99852 * 16 15 12 46 46 H 1.08996 * 109.46996 * 59.99047 * 16 15 12 47 47 H 1.08996 * 109.47113 * 299.99946 * 17 16 15 48 48 H 1.09006 * 109.47067 * 59.99677 * 17 16 15 49 49 H 0.96992 * 120.00139 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 0.0006 5 6 4.0799 2.8850 0.0000 6 6 5.6046 2.8870 0.1273 7 1 5.9026 2.3378 1.0203 8 6 6.2366 2.2426 -1.1245 9 6 7.4930 3.1193 -1.3699 10 6 6.9815 4.5201 -0.9508 11 7 6.0983 4.2698 0.2027 12 16 5.7249 5.3646 1.3878 13 8 5.7380 6.6199 0.7220 14 8 4.5325 4.8570 1.9708 15 6 7.1048 5.2513 2.5598 16 6 6.8738 6.2269 3.7155 17 6 8.0374 6.1310 4.7043 18 6 7.8101 7.0924 5.8423 19 1 6.9242 7.7098 5.8588 20 6 8.7328 7.1830 6.8629 21 7 8.5347 8.0224 7.8557 22 14 10.2648 6.1146 6.8346 23 1 11.3535 6.8293 6.1211 24 1 10.6921 5.8251 8.2270 25 1 9.9665 4.8401 6.1332 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0278 0.0005 28 1 -0.3634 0.5138 0.8899 29 1 1.8934 -0.5139 -0.8899 30 1 1.8933 -0.5139 0.8901 31 1 1.6766 1.9563 0.8900 32 1 1.6767 1.9563 -0.8900 33 1 3.9337 0.9286 -0.8891 34 1 3.9330 0.9289 0.8909 35 1 3.7925 3.3716 -0.9320 36 1 3.6445 3.4247 0.8410 37 1 6.5203 1.2093 -0.9247 38 1 5.5550 2.2993 -1.9732 39 1 7.7791 3.1063 -2.4216 40 1 8.3219 2.8008 -0.7378 41 1 6.4208 4.9786 -1.7655 42 1 7.8163 5.1569 -0.6584 43 1 7.1679 4.2353 2.9496 44 1 8.0352 5.5037 2.0511 45 1 6.8104 7.2430 3.3260 46 1 5.9435 5.9741 4.2240 47 1 8.1004 5.1149 5.0937 48 1 8.9680 6.3836 4.1960 49 1 9.1836 8.0859 8.5739 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000362909436.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:38:12 Heat of formation + Delta-G solvation = -111.356690 kcal Electronic energy + Delta-G solvation = -25219.476947 eV Core-core repulsion = 21693.172390 eV Total energy + Delta-G solvation = -3526.304557 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.181 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -39.19120 -37.00416 -36.19484 -35.79060 -34.81353 -32.83740 -32.21596 -31.15192 -29.13701 -28.37156 -25.76526 -23.68224 -22.73631 -22.00803 -21.27170 -20.77968 -20.37553 -18.71667 -17.62012 -16.95473 -16.49052 -15.95952 -15.87061 -15.45802 -14.62502 -14.45863 -14.24435 -14.20017 -13.92679 -13.69807 -13.37084 -13.30659 -12.91747 -12.76634 -12.44809 -12.34849 -12.14073 -11.90143 -11.86520 -11.78081 -11.68175 -11.58811 -11.52504 -11.36118 -11.19011 -11.01713 -10.96708 -10.94287 -10.80438 -10.70414 -10.39372 -10.10168 -9.88330 -9.71912 -9.28678 -8.98137 -8.59454 -6.09063 -4.08307 0.35465 2.70273 3.25835 3.33376 3.35528 3.93083 4.08067 4.24105 4.39650 4.45483 4.54089 4.68751 4.72245 4.84110 4.94016 5.00924 5.06306 5.09273 5.12271 5.22089 5.24012 5.25242 5.38260 5.44120 5.52878 5.53914 5.59408 5.60423 5.68780 5.71633 5.75635 5.78640 5.88208 5.88403 5.94198 6.06579 6.10666 6.12970 6.23144 6.26085 6.33112 6.39958 6.66248 7.11672 7.25750 7.70341 8.47077 8.95370 9.52001 11.04255 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.014645 B = 0.002926 C = 0.002712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1911.425398 B = 9567.571964 C =10322.061394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.125 4.125 3 C -0.122 4.122 4 C -0.113 4.113 5 C -0.155 4.155 6 C 0.154 3.846 7 H 0.074 0.926 8 C -0.123 4.123 9 C -0.133 4.133 10 C 0.121 3.879 11 N -1.014 6.014 12 S 2.614 3.386 13 O -0.956 6.956 14 O -0.951 6.951 15 C -0.616 4.616 16 C -0.097 4.097 17 C -0.004 4.004 18 C -0.527 4.527 19 H 0.075 0.925 20 C 0.067 3.933 21 N -0.900 5.900 22 Si 0.880 3.120 23 H -0.276 1.276 24 H -0.286 1.286 25 H -0.266 1.266 26 H 0.052 0.948 27 H 0.051 0.949 28 H 0.054 0.946 29 H 0.058 0.942 30 H 0.061 0.939 31 H 0.065 0.935 32 H 0.060 0.940 33 H 0.060 0.940 34 H 0.063 0.937 35 H 0.063 0.937 36 H 0.100 0.900 37 H 0.078 0.922 38 H 0.076 0.924 39 H 0.080 0.920 40 H 0.076 0.924 41 H 0.069 0.931 42 H 0.074 0.926 43 H 0.127 0.873 44 H 0.125 0.875 45 H 0.071 0.929 46 H 0.072 0.928 47 H 0.020 0.980 48 H 0.015 0.985 49 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.924 -17.077 -21.908 28.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.162 4.162 3 C -0.160 4.160 4 C -0.151 4.151 5 C -0.194 4.194 6 C 0.048 3.952 7 H 0.092 0.908 8 C -0.162 4.162 9 C -0.172 4.172 10 C -0.005 4.005 11 N -0.850 5.850 12 S 2.712 3.288 13 O -0.947 6.947 14 O -0.942 6.942 15 C -0.748 4.748 16 C -0.137 4.137 17 C -0.043 4.043 18 C -0.565 4.565 19 H 0.093 0.907 20 C -0.134 4.134 21 N -0.539 5.539 22 Si 0.708 3.292 23 H -0.202 1.202 24 H -0.212 1.212 25 H -0.191 1.191 26 H 0.071 0.929 27 H 0.070 0.930 28 H 0.074 0.926 29 H 0.077 0.923 30 H 0.080 0.920 31 H 0.084 0.916 32 H 0.078 0.922 33 H 0.079 0.921 34 H 0.082 0.918 35 H 0.082 0.918 36 H 0.118 0.882 37 H 0.097 0.903 38 H 0.095 0.905 39 H 0.099 0.901 40 H 0.094 0.906 41 H 0.087 0.913 42 H 0.092 0.908 43 H 0.145 0.855 44 H 0.144 0.856 45 H 0.089 0.911 46 H 0.090 0.910 47 H 0.038 0.962 48 H 0.034 0.966 49 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -7.653 -16.390 -21.676 28.232 hybrid contribution 1.568 -0.749 0.328 1.769 sum -6.084 -17.139 -21.347 28.044 Atomic orbital electron populations 1.21785 0.96063 1.01390 1.01885 1.21539 0.95754 0.97112 1.01814 1.21632 0.95428 0.96521 1.02376 1.21518 0.95460 0.96288 1.01881 1.22405 0.94627 0.97931 1.04397 1.21336 0.93839 0.81220 0.98785 0.90800 1.22715 0.96908 0.99200 0.97382 1.22812 0.97830 0.94612 1.01962 1.21950 0.92745 0.97387 0.88375 1.58875 1.61995 1.25737 1.38429 1.05014 0.76681 0.72921 0.74224 1.93574 1.87338 1.41103 1.72656 1.93521 1.42684 1.79582 1.78415 1.30654 1.19360 1.10012 1.14731 1.21311 1.02578 0.96209 0.93570 1.19528 0.92863 0.97662 0.94219 1.21133 1.08693 1.22013 1.04647 0.90719 1.25029 0.98083 0.95127 0.95198 1.69907 1.36364 1.36566 1.11021 0.86772 0.83583 0.81562 0.77325 1.20219 1.21244 1.19070 0.92863 0.92975 0.92643 0.92283 0.92048 0.91606 0.92163 0.92145 0.91838 0.91780 0.88179 0.90310 0.90494 0.90116 0.90556 0.91254 0.90778 0.85477 0.85624 0.91066 0.90962 0.96190 0.96648 0.92615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 9.91 37.16 0.37 -0.70 16 2 C -0.12 -0.91 5.93 -26.73 -0.16 -1.06 16 3 C -0.12 -1.02 5.21 -26.73 -0.14 -1.16 16 4 C -0.11 -0.94 4.96 -26.73 -0.13 -1.07 16 5 C -0.15 -1.60 4.65 -26.73 -0.12 -1.73 16 6 C 0.15 1.49 3.06 -66.96 -0.20 1.29 16 7 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 8 C -0.12 -0.85 5.61 -24.90 -0.14 -0.99 16 9 C -0.13 -0.89 7.08 -24.58 -0.17 -1.07 16 10 C 0.12 1.11 6.97 -2.53 -0.02 1.09 16 11 N -1.01 -11.50 3.32 -104.43 -0.35 -11.85 16 12 S 2.61 38.73 5.61 -107.50 -0.60 38.12 16 13 O -0.96 -17.00 17.70 -57.54 -1.02 -18.01 16 14 O -0.95 -16.08 14.99 -57.54 -0.86 -16.94 16 15 C -0.62 -9.19 6.18 37.16 0.23 -8.96 16 16 C -0.10 -1.93 5.16 -26.73 -0.14 -2.07 16 17 C 0.00 -0.10 4.04 -27.89 -0.11 -0.21 16 18 C -0.53 -15.10 9.66 -34.44 -0.33 -15.44 16 19 H 0.07 2.29 7.99 -52.49 -0.42 1.87 16 20 C 0.07 1.96 5.47 -17.82 -0.10 1.87 16 21 N -0.90 -27.80 13.96 55.43 0.77 -27.02 16 22 Si 0.88 21.51 27.47 -169.99 -4.67 16.84 16 23 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 24 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 25 H -0.27 -6.18 6.54 56.52 0.37 -5.81 16 26 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 27 H 0.05 0.32 8.14 -51.92 -0.42 -0.10 16 28 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.06 0.45 8.14 -51.92 -0.42 0.02 16 31 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.06 0.42 7.57 -51.93 -0.39 0.02 16 34 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.06 0.65 8.07 -51.93 -0.42 0.23 16 36 H 0.10 1.32 5.53 -51.93 -0.29 1.03 16 37 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.08 0.50 7.79 -51.93 -0.40 0.09 16 39 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 40 H 0.08 0.49 8.14 -51.92 -0.42 0.07 16 41 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.13 1.66 8.14 -51.92 -0.42 1.24 16 44 H 0.13 1.63 8.14 -51.92 -0.42 1.21 16 45 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 46 H 0.07 1.42 8.14 -51.93 -0.42 0.99 16 47 H 0.02 0.46 7.20 -51.93 -0.37 0.09 16 48 H 0.02 0.35 7.57 -51.93 -0.39 -0.04 16 49 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 LS Contribution 394.27 15.07 5.94 5.94 Total: -1.00 -34.36 394.27 -11.42 -45.78 By element: Atomic # 1 Polarization: 6.81 SS G_CDS: -9.47 Total: -2.65 kcal Atomic # 6 Polarization: -29.03 SS G_CDS: -1.17 Total: -30.21 kcal Atomic # 7 Polarization: -39.30 SS G_CDS: 0.43 Total: -38.88 kcal Atomic # 8 Polarization: -33.07 SS G_CDS: -1.88 Total: -34.95 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -4.67 Total: 16.84 kcal Atomic # 16 Polarization: 38.73 SS G_CDS: -0.60 Total: 38.12 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -34.36 -11.42 -45.78 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362909436.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.575 kcal (2) G-P(sol) polarization free energy of solvation -34.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.782 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds