Wall clock time and date at job start Tue Mar 31 2020 13:38:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.47304 * 2 1 4 4 C 1.52994 * 109.47462 * 179.97438 * 3 2 1 5 5 C 1.52998 * 109.47149 * 179.97438 * 4 3 2 6 6 C 1.52998 * 109.47225 * 174.96444 * 5 4 3 7 7 H 1.09000 * 109.87538 * 304.14410 * 6 5 4 8 8 C 1.54322 * 109.88130 * 65.31746 * 6 5 4 9 9 C 1.55157 * 102.94223 * 141.61108 * 8 6 5 10 10 C 1.54907 * 101.58315 * 324.49851 * 9 8 6 11 11 N 1.47017 * 109.88391 * 183.12420 * 6 5 4 12 12 S 1.65606 * 125.64537 * 61.68067 * 11 6 5 13 13 O 1.42104 * 104.27422 * 212.22674 * 12 11 6 14 14 O 1.42093 * 104.27914 * 340.08148 * 12 11 6 15 15 C 1.81398 * 104.45132 * 96.15896 * 12 11 6 16 16 C 1.52999 * 109.47351 * 180.02562 * 15 12 11 17 17 C 1.52998 * 109.47521 * 179.97438 * 16 15 12 18 18 C 1.50698 * 109.47083 * 179.97438 * 17 16 15 19 19 H 1.07993 * 119.99954 * 0.02562 * 18 17 16 20 20 C 1.37884 * 119.99476 * 179.97438 * 18 17 16 21 21 N 1.31512 * 119.99769 * 179.97438 * 20 18 17 22 22 Si 1.86796 * 120.00229 * 0.02562 * 20 18 17 23 23 H 1.48500 * 109.47140 * 89.99695 * 22 20 18 24 24 H 1.48500 * 109.47066 * 209.99850 * 22 20 18 25 25 H 1.48504 * 109.47199 * 329.99467 * 22 20 18 26 26 H 1.09001 * 109.47208 * 60.00382 * 1 2 3 27 27 H 1.09007 * 109.46581 * 180.02562 * 1 2 3 28 28 H 1.08991 * 109.47633 * 300.00077 * 1 2 3 29 29 H 1.09002 * 109.47627 * 239.99397 * 2 1 3 30 30 H 1.09009 * 109.47063 * 119.99924 * 2 1 3 31 31 H 1.09001 * 109.46812 * 59.99449 * 3 2 1 32 32 H 1.09001 * 109.46676 * 299.99944 * 3 2 1 33 33 H 1.09001 * 109.47284 * 60.00073 * 4 3 2 34 34 H 1.09001 * 109.47402 * 299.99833 * 4 3 2 35 35 H 1.08993 * 109.47137 * 294.96598 * 5 4 3 36 36 H 1.09000 * 109.46939 * 54.96792 * 5 4 3 37 37 H 1.09001 * 110.71900 * 259.97307 * 8 6 5 38 38 H 1.08998 * 110.72268 * 23.24891 * 8 6 5 39 39 H 1.08997 * 111.00524 * 206.41801 * 9 8 6 40 40 H 1.09007 * 111.03838 * 82.58494 * 9 8 6 41 41 H 1.09003 * 110.36322 * 278.17131 * 10 9 8 42 42 H 1.08993 * 110.36542 * 155.84807 * 10 9 8 43 43 H 1.09006 * 109.47034 * 299.99763 * 15 12 11 44 44 H 1.09006 * 109.47324 * 59.99661 * 15 12 11 45 45 H 1.09006 * 109.46827 * 299.99852 * 16 15 12 46 46 H 1.08996 * 109.46996 * 59.99047 * 16 15 12 47 47 H 1.08996 * 109.47113 * 299.99946 * 17 16 15 48 48 H 1.09006 * 109.47067 * 59.99677 * 17 16 15 49 49 H 0.96992 * 120.00139 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 0.0006 5 6 4.0799 2.8850 0.0000 6 6 5.6046 2.8870 0.1273 7 1 5.9026 2.3378 1.0203 8 6 6.2366 2.2426 -1.1245 9 6 7.4930 3.1193 -1.3699 10 6 6.9815 4.5201 -0.9508 11 7 6.0983 4.2698 0.2027 12 16 5.7249 5.3646 1.3878 13 8 5.7380 6.6199 0.7220 14 8 4.5325 4.8570 1.9708 15 6 7.1048 5.2513 2.5598 16 6 6.8738 6.2269 3.7155 17 6 8.0374 6.1310 4.7043 18 6 7.8101 7.0924 5.8423 19 1 6.9242 7.7098 5.8588 20 6 8.7328 7.1830 6.8629 21 7 8.5347 8.0224 7.8557 22 14 10.2648 6.1146 6.8346 23 1 11.3535 6.8293 6.1211 24 1 10.6921 5.8251 8.2270 25 1 9.9665 4.8401 6.1332 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0278 0.0005 28 1 -0.3634 0.5138 0.8899 29 1 1.8934 -0.5139 -0.8899 30 1 1.8933 -0.5139 0.8901 31 1 1.6766 1.9563 0.8900 32 1 1.6767 1.9563 -0.8900 33 1 3.9337 0.9286 -0.8891 34 1 3.9330 0.9289 0.8909 35 1 3.7925 3.3716 -0.9320 36 1 3.6445 3.4247 0.8410 37 1 6.5203 1.2093 -0.9247 38 1 5.5550 2.2993 -1.9732 39 1 7.7791 3.1063 -2.4216 40 1 8.3219 2.8008 -0.7378 41 1 6.4208 4.9786 -1.7655 42 1 7.8163 5.1569 -0.6584 43 1 7.1679 4.2353 2.9496 44 1 8.0352 5.5037 2.0511 45 1 6.8104 7.2430 3.3260 46 1 5.9435 5.9741 4.2240 47 1 8.1004 5.1149 5.0937 48 1 8.9680 6.3836 4.1960 49 1 9.1836 8.0859 8.5739 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000362909436.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:38:11 Heat of formation + Delta-G solvation = -133.009942 kcal Electronic energy + Delta-G solvation = -25220.415903 eV Core-core repulsion = 21693.172390 eV Total energy + Delta-G solvation = -3527.243513 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.181 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -39.90219 -38.26106 -37.08676 -36.83858 -36.54419 -34.27931 -33.50092 -31.85692 -30.19373 -29.76176 -26.43970 -25.43368 -23.52591 -22.68546 -22.18969 -21.84608 -21.44888 -19.81141 -18.99320 -18.59481 -17.55949 -17.19465 -16.61123 -16.45976 -16.20719 -15.85202 -15.25711 -15.07340 -14.84470 -14.67856 -14.38815 -14.13043 -14.02201 -13.91306 -13.69233 -13.45177 -13.32272 -13.25413 -13.18594 -12.90577 -12.72644 -12.59182 -12.56010 -12.37870 -12.13106 -11.93382 -11.87123 -11.80330 -11.68519 -11.55929 -11.47317 -11.44603 -11.35352 -11.30701 -11.09598 -10.79768 -9.89122 -8.31999 -6.38320 -0.82047 1.35002 1.37846 1.49537 1.67149 2.34579 2.77974 3.02741 3.04898 3.51445 3.72428 3.76453 3.81152 3.93349 4.08867 4.15250 4.21916 4.28829 4.32736 4.42926 4.49265 4.54320 4.57560 4.64970 4.74107 4.78753 4.79042 4.90365 4.91309 5.00516 5.04030 5.05721 5.10292 5.11784 5.17111 5.23570 5.28335 5.29303 5.33399 5.41336 5.44305 5.48978 5.55001 5.55824 5.59652 5.62227 6.22658 6.69574 7.26264 8.85038 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.014645 B = 0.002926 C = 0.002712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1911.425398 B = 9567.571964 C =10322.061394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.122 4.122 3 C -0.124 4.124 4 C -0.107 4.107 5 C -0.156 4.156 6 C 0.144 3.856 7 H 0.081 0.919 8 C -0.116 4.116 9 C -0.124 4.124 10 C 0.106 3.894 11 N -1.010 6.010 12 S 2.628 3.372 13 O -0.992 6.992 14 O -0.979 6.979 15 C -0.609 4.609 16 C -0.103 4.103 17 C -0.004 4.004 18 C -0.545 4.545 19 H 0.029 0.971 20 C 0.000 4.000 21 N -0.952 5.952 22 Si 0.956 3.044 23 H -0.264 1.264 24 H -0.284 1.284 25 H -0.239 1.239 26 H 0.054 0.946 27 H 0.061 0.939 28 H 0.046 0.954 29 H 0.071 0.929 30 H 0.061 0.939 31 H 0.045 0.955 32 H 0.059 0.941 33 H 0.083 0.917 34 H 0.064 0.936 35 H 0.061 0.939 36 H 0.066 0.934 37 H 0.100 0.900 38 H 0.083 0.917 39 H 0.101 0.899 40 H 0.084 0.916 41 H 0.067 0.933 42 H 0.080 0.920 43 H 0.152 0.848 44 H 0.151 0.849 45 H 0.060 0.940 46 H 0.062 0.938 47 H 0.032 0.968 48 H 0.031 0.969 49 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.717 -20.419 -24.246 32.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.159 4.159 3 C -0.162 4.162 4 C -0.145 4.145 5 C -0.195 4.195 6 C 0.039 3.961 7 H 0.099 0.901 8 C -0.155 4.155 9 C -0.163 4.163 10 C -0.019 4.019 11 N -0.848 5.848 12 S 2.726 3.274 13 O -0.982 6.982 14 O -0.969 6.969 15 C -0.740 4.740 16 C -0.142 4.142 17 C -0.042 4.042 18 C -0.583 4.583 19 H 0.047 0.953 20 C -0.196 4.196 21 N -0.592 5.592 22 Si 0.778 3.222 23 H -0.189 1.189 24 H -0.210 1.210 25 H -0.162 1.162 26 H 0.073 0.927 27 H 0.080 0.920 28 H 0.065 0.935 29 H 0.090 0.910 30 H 0.079 0.921 31 H 0.064 0.936 32 H 0.078 0.922 33 H 0.101 0.899 34 H 0.083 0.917 35 H 0.079 0.921 36 H 0.085 0.915 37 H 0.119 0.881 38 H 0.101 0.899 39 H 0.120 0.880 40 H 0.103 0.897 41 H 0.086 0.914 42 H 0.099 0.901 43 H 0.170 0.830 44 H 0.170 0.830 45 H 0.079 0.921 46 H 0.081 0.919 47 H 0.050 0.950 48 H 0.049 0.951 49 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -5.467 -19.727 -24.029 31.567 hybrid contribution 0.767 0.360 1.041 1.342 sum -4.700 -19.367 -22.988 30.424 Atomic orbital electron populations 1.21804 0.96014 1.01909 1.01586 1.21520 0.95833 0.96178 1.02392 1.21640 0.95855 0.97261 1.01399 1.21487 0.95059 0.94977 1.02980 1.22379 0.95488 0.98936 1.02744 1.21625 0.93314 0.80356 1.00849 0.90112 1.22734 0.96855 1.00033 0.95876 1.22821 0.97732 0.92332 1.03372 1.22271 0.92623 0.99538 0.87426 1.58565 1.62451 1.25999 1.37832 1.04271 0.76206 0.72533 0.74342 1.93525 1.87759 1.43455 1.73487 1.93497 1.44263 1.79889 1.79298 1.30555 1.20615 1.09892 1.12984 1.21175 1.00915 0.97385 0.94750 1.19495 0.94836 0.96589 0.93319 1.21540 1.07311 1.22610 1.06888 0.95277 1.26134 1.02281 0.96752 0.94477 1.70080 1.38127 1.38813 1.12159 0.85574 0.78404 0.80331 0.77844 1.18859 1.20980 1.16213 0.92699 0.92032 0.93472 0.91020 0.92057 0.93629 0.92198 0.89889 0.91706 0.92060 0.91545 0.88141 0.89879 0.88026 0.89695 0.91444 0.90145 0.83014 0.83047 0.92088 0.91949 0.94954 0.95090 0.92367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.02 9.91 71.98 0.71 -1.31 16 2 C -0.12 -1.60 5.93 30.59 0.18 -1.42 16 3 C -0.12 -2.01 5.21 30.59 0.16 -1.85 16 4 C -0.11 -1.59 4.96 30.59 0.15 -1.44 16 5 C -0.16 -3.12 4.65 30.59 0.14 -2.98 16 6 C 0.14 2.46 3.06 45.34 0.14 2.60 16 7 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 8 C -0.12 -1.16 5.61 31.78 0.18 -0.98 16 9 C -0.12 -1.16 7.08 31.99 0.23 -0.93 16 10 C 0.11 1.68 6.97 86.85 0.61 2.29 16 11 N -1.01 -21.23 3.32 -484.30 -1.61 -22.83 16 12 S 2.63 77.18 5.61 -56.49 -0.32 76.86 16 13 O -0.99 -35.70 17.70 -127.65 -2.26 -37.96 16 14 O -0.98 -33.92 14.99 -127.65 -1.91 -35.83 16 15 C -0.61 -17.02 6.18 71.98 0.44 -16.57 16 16 C -0.10 -4.08 5.16 30.59 0.16 -3.92 16 17 C 0.00 -0.18 4.04 29.85 0.12 -0.06 16 18 C -0.55 -32.09 9.66 25.60 0.25 -31.84 16 19 H 0.03 1.90 7.99 -2.91 -0.02 1.87 16 20 C 0.00 0.02 5.47 84.66 0.46 0.48 16 21 N -0.95 -60.50 13.96 21.45 0.30 -60.20 16 22 Si 0.96 43.47 27.47 68.60 1.88 45.35 16 23 H -0.26 -11.41 7.11 99.48 0.71 -10.70 16 24 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16 25 H -0.24 -9.76 6.54 99.48 0.65 -9.11 16 26 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 27 H 0.06 0.67 8.14 -2.38 -0.02 0.66 16 28 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 29 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 30 H 0.06 0.81 8.14 -2.38 -0.02 0.79 16 31 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 32 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 33 H 0.08 0.88 7.57 -2.39 -0.02 0.86 16 34 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 35 H 0.06 1.21 8.07 -2.39 -0.02 1.19 16 36 H 0.07 1.80 5.53 -2.39 -0.01 1.79 16 37 H 0.10 0.63 8.14 -2.39 -0.02 0.61 16 38 H 0.08 0.75 7.79 -2.39 -0.02 0.74 16 39 H 0.10 0.58 8.14 -2.39 -0.02 0.56 16 40 H 0.08 0.69 8.14 -2.38 -0.02 0.67 16 41 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 42 H 0.08 1.16 8.14 -2.39 -0.02 1.15 16 43 H 0.15 3.49 8.14 -2.39 -0.02 3.48 16 44 H 0.15 3.44 8.14 -2.39 -0.02 3.43 16 45 H 0.06 2.48 8.14 -2.38 -0.02 2.46 16 46 H 0.06 2.53 8.14 -2.39 -0.02 2.51 16 47 H 0.03 1.41 7.20 -2.39 -0.02 1.39 16 48 H 0.03 1.33 7.57 -2.38 -0.02 1.32 16 49 H 0.27 15.75 8.31 -92.71 -0.77 14.98 16 Total: -1.00 -77.60 394.27 0.83 -76.76 By element: Atomic # 1 Polarization: 14.96 SS G_CDS: 0.82 Total: 15.77 kcal Atomic # 6 Polarization: -61.86 SS G_CDS: 3.93 Total: -57.93 kcal Atomic # 7 Polarization: -81.72 SS G_CDS: -1.31 Total: -83.03 kcal Atomic # 8 Polarization: -69.62 SS G_CDS: -4.17 Total: -73.79 kcal Atomic # 14 Polarization: 43.47 SS G_CDS: 1.88 Total: 45.35 kcal Atomic # 16 Polarization: 77.18 SS G_CDS: -0.32 Total: 76.86 kcal Total: -77.60 0.83 -76.76 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362909436.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.248 kcal (2) G-P(sol) polarization free energy of solvation -77.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.762 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds