Wall clock time and date at job start Tue Mar 31 2020 13:36:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50705 * 119.99996 * 2 1 4 4 C 1.50702 * 120.00100 * 179.97438 * 2 1 3 5 5 C 1.52998 * 109.47071 * 0.02562 * 4 2 1 6 6 C 1.52998 * 109.47295 * 239.99928 * 4 2 1 7 7 C 1.50705 * 109.46865 * 120.00268 * 4 2 1 8 8 O 1.21289 * 119.99873 * 0.02562 * 7 4 2 9 9 N 1.34774 * 119.99979 * 180.02562 * 7 4 2 10 10 C 1.39920 * 119.99878 * 184.62039 * 9 7 4 11 11 C 1.38932 * 120.04125 * 324.88039 * 10 9 7 12 12 C 1.38125 * 120.03581 * 180.02562 * 11 10 9 13 13 C 1.38211 * 120.12597 * 359.68642 * 12 11 10 14 14 C 1.38761 * 120.08348 * 0.59562 * 13 12 11 15 15 O 1.35897 * 120.01904 * 179.70144 * 14 13 12 16 16 C 1.42904 * 117.00310 * 359.72241 * 15 14 13 17 17 C 1.52993 * 109.47317 * 180.02562 * 16 15 14 18 18 C 1.50702 * 109.47111 * 179.97438 * 17 16 15 19 19 H 1.08001 * 119.99760 * 359.97438 * 18 17 16 20 20 C 1.37882 * 120.00211 * 180.02562 * 18 17 16 21 21 N 1.31515 * 119.99560 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 120.00045 * 180.02562 * 20 18 17 23 23 H 1.48495 * 109.47217 * 90.00054 * 22 20 18 24 24 H 1.48505 * 109.47009 * 210.00237 * 22 20 18 25 25 H 1.48502 * 109.47146 * 329.99902 * 22 20 18 26 26 C 1.38621 * 119.95974 * 359.42482 * 14 13 12 27 27 H 1.08003 * 120.00115 * 179.97438 * 1 2 3 28 28 H 1.07997 * 120.00718 * 0.02562 * 1 2 3 29 29 H 1.08997 * 109.46946 * 269.99632 * 3 2 1 30 30 H 1.08997 * 109.46577 * 29.99559 * 3 2 1 31 31 H 1.08995 * 109.46765 * 149.99662 * 3 2 1 32 32 H 1.09001 * 109.46982 * 179.97438 * 5 4 2 33 33 H 1.08990 * 109.47284 * 299.99603 * 5 4 2 34 34 H 1.09000 * 109.47278 * 59.99950 * 5 4 2 35 35 H 1.08991 * 109.47567 * 300.00307 * 6 4 2 36 36 H 1.09003 * 109.46730 * 60.00875 * 6 4 2 37 37 H 1.09001 * 109.47197 * 180.02562 * 6 4 2 38 38 H 0.97004 * 120.00302 * 4.62050 * 9 7 4 39 39 H 1.07992 * 119.98065 * 0.02979 * 11 10 9 40 40 H 1.08003 * 119.93580 * 179.97438 * 12 11 10 41 41 H 1.08007 * 119.95397 * 180.29435 * 13 12 11 42 42 H 1.09007 * 109.47235 * 300.00500 * 16 15 14 43 43 H 1.09000 * 109.46918 * 59.99884 * 16 15 14 44 44 H 1.08997 * 109.47698 * 300.00054 * 17 16 15 45 45 H 1.09004 * 109.47119 * 60.00439 * 17 16 15 46 46 H 0.96999 * 119.99294 * 179.97438 * 21 20 18 47 47 H 1.08007 * 120.05986 * 180.25755 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0635 -1.3051 0.0006 5 6 1.0693 -2.4680 0.0005 6 6 2.9431 -1.3856 1.2498 7 6 2.9299 -1.3854 -1.2299 8 8 2.9354 -0.4724 -2.0284 9 7 3.6988 -2.4716 -1.4430 10 6 4.5751 -2.5055 -2.5332 11 6 4.2198 -1.8965 -3.7303 12 6 5.0847 -1.9305 -4.8067 13 6 6.3078 -2.5641 -4.6940 14 6 6.6655 -3.1790 -3.5026 15 8 7.8659 -3.8070 -3.3952 16 6 8.7073 -3.8003 -4.5502 17 6 10.0045 -4.5499 -4.2406 18 6 10.8915 -4.5434 -5.4589 19 1 10.5626 -4.0539 -6.3637 20 6 12.1225 -5.1633 -5.4188 21 7 12.5223 -5.7606 -4.3175 22 14 13.2223 -5.1546 -6.9288 23 1 14.1009 -3.9580 -6.8943 24 1 14.0578 -6.3822 -6.9396 25 1 12.3822 -5.1168 -8.1528 26 6 5.8000 -3.1475 -2.4203 27 1 -0.5400 -0.9353 -0.0004 28 1 -0.5401 0.9352 -0.0004 29 1 2.2452 1.6197 -1.0276 30 1 1.4743 2.0647 0.5138 31 1 3.0158 1.1748 0.5139 32 1 1.6143 -3.4120 0.0004 33 1 0.4423 -2.4102 0.8901 34 1 0.4429 -2.4105 -0.8898 35 1 3.6514 -0.5572 1.2495 36 1 2.3164 -1.3276 2.1398 37 1 3.4885 -2.3294 1.2500 38 1 3.6446 -3.2300 -0.8405 39 1 3.2668 -1.3963 -3.8193 40 1 4.8067 -1.4569 -5.7367 41 1 6.9841 -2.5849 -5.5359 42 1 8.1932 -4.2905 -5.3771 43 1 8.9386 -2.7713 -4.8253 44 1 10.5188 -4.0602 -3.4137 45 1 9.7728 -5.5790 -3.9659 46 1 13.3882 -6.1970 -4.2894 47 1 6.0785 -3.6220 -1.4908 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424602794.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:36:33 Heat of formation + Delta-G solvation = -43.297277 kcal Electronic energy + Delta-G solvation = -25717.376144 eV Core-core repulsion = 22058.578913 eV Total energy + Delta-G solvation = -3658.797231 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.09933 -39.58454 -37.76326 -36.59936 -34.78907 -33.37484 -32.34085 -30.88551 -29.58471 -28.97516 -28.75062 -26.38446 -25.17352 -24.46674 -22.66724 -22.54848 -21.04112 -20.24368 -18.76263 -18.00717 -16.92296 -16.50019 -16.21362 -15.78558 -15.61946 -15.35073 -15.28712 -14.96317 -14.70948 -14.47987 -14.12595 -13.52709 -13.41213 -13.09043 -12.85208 -12.78318 -12.67930 -12.59138 -12.42119 -12.32149 -12.09509 -11.84094 -11.65471 -11.39539 -11.34806 -11.08497 -10.93469 -10.79016 -10.53494 -10.28170 -9.95447 -9.80048 -9.66417 -9.32263 -9.29440 -8.46701 -8.33072 -7.77889 -6.11323 -4.15829 1.32467 1.68662 1.85229 2.39425 2.86171 3.27077 3.33072 3.35937 3.87037 3.95071 4.04772 4.27555 4.40903 4.41542 4.58441 4.88337 5.01207 5.05734 5.18299 5.25204 5.25337 5.28388 5.33018 5.35766 5.39213 5.49087 5.50093 5.55005 5.66183 5.70112 5.74114 5.80132 5.86880 6.03170 6.04340 6.26291 6.30753 6.38324 6.52760 6.54283 6.62480 6.73339 7.00326 7.20967 7.49224 7.62805 7.79922 7.90343 8.04194 8.22860 8.89708 9.48491 11.00238 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.032560 B = 0.002062 C = 0.002013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 859.731864 B =13574.805705 C =13904.914839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.092 4.092 3 C -0.118 4.118 4 C -0.046 4.046 5 C -0.146 4.146 6 C -0.141 4.141 7 C 0.525 3.475 8 O -0.509 6.509 9 N -0.669 5.669 10 C 0.175 3.825 11 C -0.169 4.169 12 C -0.064 4.064 13 C -0.223 4.223 14 C 0.162 3.838 15 O -0.315 6.315 16 C 0.065 3.935 17 C 0.025 3.975 18 C -0.526 4.526 19 H 0.058 0.942 20 C 0.060 3.940 21 N -0.889 5.889 22 Si 0.899 3.101 23 H -0.279 1.279 24 H -0.285 1.285 25 H -0.273 1.273 26 C -0.188 4.188 27 H 0.104 0.896 28 H 0.100 0.900 29 H 0.080 0.920 30 H 0.060 0.940 31 H 0.059 0.941 32 H 0.064 0.936 33 H 0.075 0.925 34 H 0.066 0.934 35 H 0.066 0.934 36 H 0.072 0.928 37 H 0.065 0.935 38 H 0.409 0.591 39 H 0.134 0.866 40 H 0.124 0.876 41 H 0.131 0.869 42 H 0.052 0.948 43 H 0.051 0.949 44 H 0.028 0.972 45 H 0.028 0.972 46 H 0.263 0.737 47 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.011 8.600 10.703 28.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.093 4.093 3 C -0.174 4.174 4 C -0.049 4.049 5 C -0.203 4.203 6 C -0.198 4.198 7 C 0.312 3.688 8 O -0.383 6.383 9 N -0.314 5.314 10 C 0.081 3.919 11 C -0.189 4.189 12 C -0.083 4.083 13 C -0.242 4.242 14 C 0.115 3.885 15 O -0.228 6.228 16 C -0.009 4.009 17 C -0.012 4.012 18 C -0.564 4.564 19 H 0.077 0.923 20 C -0.142 4.142 21 N -0.528 5.528 22 Si 0.727 3.273 23 H -0.205 1.205 24 H -0.211 1.211 25 H -0.198 1.198 26 C -0.209 4.209 27 H 0.122 0.878 28 H 0.118 0.882 29 H 0.098 0.902 30 H 0.079 0.921 31 H 0.078 0.922 32 H 0.083 0.917 33 H 0.094 0.906 34 H 0.085 0.915 35 H 0.085 0.915 36 H 0.091 0.909 37 H 0.084 0.916 38 H 0.245 0.755 39 H 0.152 0.848 40 H 0.142 0.858 41 H 0.149 0.851 42 H 0.070 0.930 43 H 0.070 0.930 44 H 0.046 0.954 45 H 0.046 0.954 46 H 0.073 0.927 47 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -24.780 9.075 10.414 28.370 hybrid contribution 0.727 -0.384 -0.710 1.087 sum -24.053 8.690 9.704 27.353 Atomic orbital electron populations 1.23805 0.95064 1.02289 1.02556 1.21220 0.94865 0.93952 0.99242 1.20869 0.99621 0.93780 1.03162 1.19854 0.95494 0.95702 0.93874 1.21987 0.98836 0.96083 1.03417 1.21885 0.99354 1.02947 0.95631 1.20559 0.79599 0.81409 0.87208 1.90700 1.64160 1.37512 1.45901 1.43458 1.40280 1.19303 1.28384 1.17305 0.88978 0.98733 0.86851 1.21018 1.01856 1.04602 0.91401 1.20807 0.92847 0.96578 0.98040 1.21400 0.99503 1.04921 0.98378 1.18804 0.86082 0.90765 0.92895 1.86159 1.25115 1.70288 1.41231 1.23352 0.91738 1.00750 0.85042 1.19127 0.88133 0.95855 0.98077 1.20973 1.01615 1.36055 0.97803 0.92336 1.24996 0.97839 0.95035 0.96367 1.69977 1.20636 1.35455 1.26691 0.86479 0.80448 0.77604 0.82810 1.20492 1.21054 1.19753 1.19998 0.92756 1.08898 0.99257 0.87833 0.88168 0.90182 0.92139 0.92161 0.91689 0.90642 0.91465 0.91474 0.90888 0.91591 0.75490 0.84792 0.85789 0.85068 0.93015 0.93027 0.95404 0.95392 0.92712 0.85164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.45 13.29 29.02 0.39 -1.07 16 2 C -0.09 -0.78 4.42 -101.06 -0.45 -1.22 16 3 C -0.12 -1.03 9.13 36.01 0.33 -0.71 16 4 C -0.05 -0.35 0.73 -156.81 -0.11 -0.47 16 5 C -0.15 -0.82 7.02 37.16 0.26 -0.56 16 6 C -0.14 -0.88 8.20 37.16 0.30 -0.57 16 7 C 0.53 5.73 6.22 -10.98 -0.07 5.66 16 8 O -0.51 -7.26 12.14 5.55 0.07 -7.20 16 9 N -0.67 -6.93 5.11 -9.88 -0.05 -6.99 16 10 C 0.17 2.39 6.30 -83.72 -0.53 1.86 16 11 C -0.17 -2.42 8.70 -39.37 -0.34 -2.76 16 12 C -0.06 -0.91 10.03 -39.63 -0.40 -1.31 16 13 C -0.22 -3.57 9.04 -39.40 -0.36 -3.93 16 14 C 0.16 2.84 6.68 -39.25 -0.26 2.58 16 15 O -0.31 -6.44 10.13 -19.42 -0.20 -6.64 16 16 C 0.07 1.39 4.68 37.15 0.17 1.57 16 17 C 0.03 0.66 5.34 -27.89 -0.15 0.51 16 18 C -0.53 -14.64 9.11 -34.44 -0.31 -14.95 16 19 H 0.06 1.55 7.74 -52.49 -0.41 1.15 16 20 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 21 N -0.89 -26.38 13.29 55.43 0.74 -25.65 16 22 Si 0.90 21.26 29.54 -169.99 -5.02 16.23 16 23 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 24 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 25 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 26 C -0.19 -2.83 9.90 -39.25 -0.39 -3.22 16 27 H 0.10 0.62 5.69 -52.48 -0.30 0.32 16 28 H 0.10 0.65 8.04 -52.49 -0.42 0.23 16 29 H 0.08 0.85 7.38 -51.93 -0.38 0.47 16 30 H 0.06 0.43 8.06 -51.93 -0.42 0.01 16 31 H 0.06 0.52 6.63 -51.93 -0.34 0.17 16 32 H 0.06 0.28 7.46 -51.93 -0.39 -0.10 16 33 H 0.07 0.33 7.50 -51.93 -0.39 -0.06 16 34 H 0.07 0.42 7.50 -51.93 -0.39 0.03 16 35 H 0.07 0.48 6.80 -51.93 -0.35 0.13 16 36 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 37 H 0.07 0.34 7.68 -51.93 -0.40 -0.06 16 38 H 0.41 2.98 7.68 -40.82 -0.31 2.67 16 39 H 0.13 1.93 6.22 -52.49 -0.33 1.61 16 40 H 0.12 1.46 8.06 -52.48 -0.42 1.04 16 41 H 0.13 2.05 6.29 -52.48 -0.33 1.72 16 42 H 0.05 1.05 7.67 -51.93 -0.40 0.65 16 43 H 0.05 1.06 7.65 -51.93 -0.40 0.66 16 44 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 45 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 46 H 0.26 7.32 8.31 -40.82 -0.34 6.99 16 47 H 0.13 1.75 8.06 -52.48 -0.42 1.33 16 LS Contribution 380.59 15.07 5.74 5.74 Total: -1.00 -32.20 380.59 -7.94 -40.14 By element: Atomic # 1 Polarization: 8.54 SS G_CDS: -7.20 Total: 1.34 kcal Atomic # 6 Polarization: -14.97 SS G_CDS: -2.01 Total: -16.98 kcal Atomic # 7 Polarization: -33.32 SS G_CDS: 0.69 Total: -32.63 kcal Atomic # 8 Polarization: -13.70 SS G_CDS: -0.13 Total: -13.83 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -32.20 -7.94 -40.14 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424602794.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.158 kcal (2) G-P(sol) polarization free energy of solvation -32.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.139 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds