Wall clock time and date at job start Tue Mar 31 2020 13:36:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50705 * 119.99996 * 2 1 4 4 C 1.50702 * 120.00100 * 179.97438 * 2 1 3 5 5 C 1.52998 * 109.47071 * 0.02562 * 4 2 1 6 6 C 1.52998 * 109.47295 * 239.99928 * 4 2 1 7 7 C 1.50705 * 109.46865 * 120.00268 * 4 2 1 8 8 O 1.21289 * 119.99873 * 0.02562 * 7 4 2 9 9 N 1.34774 * 119.99979 * 180.02562 * 7 4 2 10 10 C 1.39920 * 119.99878 * 184.62039 * 9 7 4 11 11 C 1.38932 * 120.04125 * 324.88039 * 10 9 7 12 12 C 1.38125 * 120.03581 * 180.02562 * 11 10 9 13 13 C 1.38211 * 120.12597 * 359.68642 * 12 11 10 14 14 C 1.38761 * 120.08348 * 0.59562 * 13 12 11 15 15 O 1.35897 * 120.01904 * 179.70144 * 14 13 12 16 16 C 1.42904 * 117.00310 * 359.72241 * 15 14 13 17 17 C 1.52993 * 109.47317 * 180.02562 * 16 15 14 18 18 C 1.50702 * 109.47111 * 179.97438 * 17 16 15 19 19 H 1.08001 * 119.99760 * 359.97438 * 18 17 16 20 20 C 1.37882 * 120.00211 * 180.02562 * 18 17 16 21 21 N 1.31515 * 119.99560 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 120.00045 * 180.02562 * 20 18 17 23 23 H 1.48495 * 109.47217 * 90.00054 * 22 20 18 24 24 H 1.48505 * 109.47009 * 210.00237 * 22 20 18 25 25 H 1.48502 * 109.47146 * 329.99902 * 22 20 18 26 26 C 1.38621 * 119.95974 * 359.42482 * 14 13 12 27 27 H 1.08003 * 120.00115 * 179.97438 * 1 2 3 28 28 H 1.07997 * 120.00718 * 0.02562 * 1 2 3 29 29 H 1.08997 * 109.46946 * 269.99632 * 3 2 1 30 30 H 1.08997 * 109.46577 * 29.99559 * 3 2 1 31 31 H 1.08995 * 109.46765 * 149.99662 * 3 2 1 32 32 H 1.09001 * 109.46982 * 179.97438 * 5 4 2 33 33 H 1.08990 * 109.47284 * 299.99603 * 5 4 2 34 34 H 1.09000 * 109.47278 * 59.99950 * 5 4 2 35 35 H 1.08991 * 109.47567 * 300.00307 * 6 4 2 36 36 H 1.09003 * 109.46730 * 60.00875 * 6 4 2 37 37 H 1.09001 * 109.47197 * 180.02562 * 6 4 2 38 38 H 0.97004 * 120.00302 * 4.62050 * 9 7 4 39 39 H 1.07992 * 119.98065 * 0.02979 * 11 10 9 40 40 H 1.08003 * 119.93580 * 179.97438 * 12 11 10 41 41 H 1.08007 * 119.95397 * 180.29435 * 13 12 11 42 42 H 1.09007 * 109.47235 * 300.00500 * 16 15 14 43 43 H 1.09000 * 109.46918 * 59.99884 * 16 15 14 44 44 H 1.08997 * 109.47698 * 300.00054 * 17 16 15 45 45 H 1.09004 * 109.47119 * 60.00439 * 17 16 15 46 46 H 0.96999 * 119.99294 * 179.97438 * 21 20 18 47 47 H 1.08007 * 120.05986 * 180.25755 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0635 -1.3051 0.0006 5 6 1.0693 -2.4680 0.0005 6 6 2.9431 -1.3856 1.2498 7 6 2.9299 -1.3854 -1.2299 8 8 2.9354 -0.4724 -2.0284 9 7 3.6988 -2.4716 -1.4430 10 6 4.5751 -2.5055 -2.5332 11 6 4.2198 -1.8965 -3.7303 12 6 5.0847 -1.9305 -4.8067 13 6 6.3078 -2.5641 -4.6940 14 6 6.6655 -3.1790 -3.5026 15 8 7.8659 -3.8070 -3.3952 16 6 8.7073 -3.8003 -4.5502 17 6 10.0045 -4.5499 -4.2406 18 6 10.8915 -4.5434 -5.4589 19 1 10.5626 -4.0539 -6.3637 20 6 12.1225 -5.1633 -5.4188 21 7 12.5223 -5.7606 -4.3175 22 14 13.2223 -5.1546 -6.9288 23 1 14.1009 -3.9580 -6.8943 24 1 14.0578 -6.3822 -6.9396 25 1 12.3822 -5.1168 -8.1528 26 6 5.8000 -3.1475 -2.4203 27 1 -0.5400 -0.9353 -0.0004 28 1 -0.5401 0.9352 -0.0004 29 1 2.2452 1.6197 -1.0276 30 1 1.4743 2.0647 0.5138 31 1 3.0158 1.1748 0.5139 32 1 1.6143 -3.4120 0.0004 33 1 0.4423 -2.4102 0.8901 34 1 0.4429 -2.4105 -0.8898 35 1 3.6514 -0.5572 1.2495 36 1 2.3164 -1.3276 2.1398 37 1 3.4885 -2.3294 1.2500 38 1 3.6446 -3.2300 -0.8405 39 1 3.2668 -1.3963 -3.8193 40 1 4.8067 -1.4569 -5.7367 41 1 6.9841 -2.5849 -5.5359 42 1 8.1932 -4.2905 -5.3771 43 1 8.9386 -2.7713 -4.8253 44 1 10.5188 -4.0602 -3.4137 45 1 9.7728 -5.5790 -3.9659 46 1 13.3882 -6.1970 -4.2894 47 1 6.0785 -3.6220 -1.4908 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424602794.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:36:32 Heat of formation + Delta-G solvation = -61.339361 kcal Electronic energy + Delta-G solvation = -25718.158507 eV Core-core repulsion = 22058.578913 eV Total energy + Delta-G solvation = -3659.579594 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.00596 -40.83716 -38.85197 -37.54221 -35.85056 -35.39788 -33.00322 -32.60423 -31.00773 -30.01823 -29.43308 -27.05359 -26.92177 -25.31380 -23.95307 -23.71673 -22.52282 -21.39574 -19.71167 -19.20239 -18.30863 -17.67234 -17.28956 -16.98177 -16.93527 -16.75620 -16.42358 -16.25638 -15.84650 -15.49653 -14.91195 -14.60164 -14.44746 -14.32944 -14.29413 -14.01676 -13.49988 -13.38648 -13.25337 -13.18629 -13.11376 -13.05438 -12.79176 -12.69400 -12.57164 -12.54283 -12.11979 -11.95897 -11.72906 -11.63228 -11.58228 -11.39762 -11.23439 -10.78203 -10.61567 -9.94724 -9.49243 -9.03270 -8.26461 -6.39669 0.19028 0.45632 1.22305 1.41353 1.43310 1.51086 1.54437 1.94626 2.32985 2.57006 2.77915 3.08081 3.43169 3.66879 3.82647 3.88536 4.02497 4.14257 4.19298 4.26656 4.28269 4.31845 4.43293 4.52173 4.64655 4.67605 4.68167 4.75279 4.76544 4.80120 4.84500 4.86499 5.06688 5.14515 5.21938 5.23175 5.24494 5.27693 5.33341 5.38517 5.48028 5.49960 5.68238 5.70331 5.88266 5.92997 6.07919 6.36068 6.51943 6.74982 7.05463 7.30224 8.86527 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.032560 B = 0.002062 C = 0.002013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 859.731864 B =13574.805705 C =13904.914839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.116 4.116 3 C -0.116 4.116 4 C -0.039 4.039 5 C -0.146 4.146 6 C -0.141 4.141 7 C 0.522 3.478 8 O -0.546 6.546 9 N -0.659 5.659 10 C 0.181 3.819 11 C -0.171 4.171 12 C -0.061 4.061 13 C -0.232 4.232 14 C 0.132 3.868 15 O -0.336 6.336 16 C 0.083 3.917 17 C 0.028 3.972 18 C -0.546 4.546 19 H 0.070 0.930 20 C 0.001 3.999 21 N -0.930 5.930 22 Si 0.975 3.025 23 H -0.271 1.271 24 H -0.281 1.281 25 H -0.260 1.260 26 C -0.189 4.189 27 H 0.119 0.881 28 H 0.105 0.895 29 H 0.055 0.945 30 H 0.073 0.927 31 H 0.055 0.945 32 H 0.079 0.921 33 H 0.094 0.906 34 H 0.060 0.940 35 H 0.052 0.948 36 H 0.089 0.911 37 H 0.078 0.922 38 H 0.425 0.575 39 H 0.135 0.865 40 H 0.150 0.850 41 H 0.133 0.867 42 H 0.063 0.937 43 H 0.060 0.940 44 H -0.001 1.001 45 H 0.001 0.999 46 H 0.267 0.733 47 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.713 8.785 10.539 30.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.117 4.117 3 C -0.173 4.173 4 C -0.042 4.042 5 C -0.203 4.203 6 C -0.198 4.198 7 C 0.311 3.689 8 O -0.421 6.421 9 N -0.305 5.305 10 C 0.086 3.914 11 C -0.192 4.192 12 C -0.079 4.079 13 C -0.251 4.251 14 C 0.085 3.915 15 O -0.250 6.250 16 C 0.009 3.991 17 C -0.009 4.009 18 C -0.583 4.583 19 H 0.088 0.912 20 C -0.197 4.197 21 N -0.569 5.569 22 Si 0.799 3.201 23 H -0.197 1.197 24 H -0.206 1.206 25 H -0.184 1.184 26 C -0.210 4.210 27 H 0.137 0.863 28 H 0.124 0.876 29 H 0.073 0.927 30 H 0.092 0.908 31 H 0.074 0.926 32 H 0.098 0.902 33 H 0.112 0.888 34 H 0.079 0.921 35 H 0.071 0.929 36 H 0.108 0.892 37 H 0.097 0.903 38 H 0.264 0.736 39 H 0.153 0.847 40 H 0.168 0.832 41 H 0.151 0.849 42 H 0.081 0.919 43 H 0.078 0.922 44 H 0.017 0.983 45 H 0.019 0.981 46 H 0.075 0.925 47 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -26.518 9.252 10.277 29.907 hybrid contribution 1.098 -0.376 -0.567 1.292 sum -25.420 8.876 9.710 28.623 Atomic orbital electron populations 1.24026 0.94718 1.03347 1.00499 1.21316 0.95427 0.93942 1.00979 1.20823 0.99957 0.94822 1.01666 1.19874 0.95465 0.96365 0.92475 1.22036 0.98573 0.95636 1.04029 1.21924 0.99279 1.03067 0.95536 1.21283 0.79245 0.80594 0.87764 1.90685 1.65303 1.38749 1.47411 1.43450 1.39368 1.20014 1.27698 1.17352 0.88892 0.97522 0.87644 1.21195 1.01917 1.04291 0.91758 1.21071 0.91918 0.95806 0.99105 1.21484 1.00326 1.05320 0.97965 1.19101 0.85535 0.92268 0.94564 1.86075 1.26545 1.71654 1.40693 1.22901 0.90147 1.00432 0.85603 1.18966 0.90423 0.94616 0.96895 1.21400 1.02237 1.36132 0.98567 0.91152 1.26031 0.99542 0.94397 0.99765 1.70117 1.21317 1.36341 1.29133 0.85296 0.78244 0.77797 0.78796 1.19650 1.20646 1.18361 1.20136 0.92773 1.08926 0.99155 0.86293 0.87639 0.92671 0.90810 0.92556 0.90244 0.88764 0.92087 0.92854 0.89173 0.90322 0.73585 0.84686 0.83234 0.84934 0.91926 0.92193 0.98285 0.98095 0.92459 0.83951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.34 13.29 67.79 0.90 -1.44 16 2 C -0.12 -1.79 4.42 -16.48 -0.07 -1.87 16 3 C -0.12 -2.01 9.13 71.24 0.65 -1.36 16 4 C -0.04 -0.52 0.73 -53.67 -0.04 -0.56 16 5 C -0.15 -1.21 7.02 71.98 0.51 -0.70 16 6 C -0.14 -1.46 8.20 71.98 0.59 -0.87 16 7 C 0.52 10.78 6.22 87.66 0.54 11.33 16 8 O -0.55 -15.38 12.14 -3.06 -0.04 -15.42 16 9 N -0.66 -12.65 5.11 -303.55 -1.55 -14.20 16 10 C 0.18 4.75 6.30 38.14 0.24 4.99 16 11 C -0.17 -4.74 8.70 22.41 0.19 -4.55 16 12 C -0.06 -1.65 10.03 22.24 0.22 -1.43 16 13 C -0.23 -7.32 9.04 22.39 0.20 -7.12 16 14 C 0.13 4.62 6.68 22.49 0.15 4.77 16 15 O -0.34 -14.05 10.13 -92.39 -0.94 -14.98 16 16 C 0.08 3.64 4.68 71.98 0.34 3.97 16 17 C 0.03 1.53 5.34 29.85 0.16 1.69 16 18 C -0.55 -30.70 9.11 25.60 0.23 -30.47 16 19 H 0.07 3.70 7.74 -2.91 -0.02 3.68 16 20 C 0.00 0.07 5.46 84.66 0.46 0.53 16 21 N -0.93 -56.34 13.29 21.45 0.28 -56.05 16 22 Si 0.98 43.46 29.54 68.60 2.03 45.49 16 23 H -0.27 -11.68 7.11 99.48 0.71 -10.98 16 24 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 25 H -0.26 -10.94 7.11 99.48 0.71 -10.23 16 26 C -0.19 -5.58 9.90 22.48 0.22 -5.36 16 27 H 0.12 1.08 5.69 -2.91 -0.02 1.06 16 28 H 0.11 1.17 8.04 -2.91 -0.02 1.14 16 29 H 0.05 1.22 7.38 -2.39 -0.02 1.20 16 30 H 0.07 1.01 8.06 -2.39 -0.02 0.99 16 31 H 0.06 0.98 6.63 -2.39 -0.02 0.96 16 32 H 0.08 0.43 7.46 -2.39 -0.02 0.42 16 33 H 0.09 0.46 7.50 -2.39 -0.02 0.45 16 34 H 0.06 0.60 7.50 -2.39 -0.02 0.59 16 35 H 0.05 0.71 6.80 -2.39 -0.02 0.69 16 36 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 37 H 0.08 0.60 7.68 -2.39 -0.02 0.58 16 38 H 0.42 5.27 7.68 -92.71 -0.71 4.56 16 39 H 0.14 3.77 6.22 -2.91 -0.02 3.75 16 40 H 0.15 3.22 8.06 -2.91 -0.02 3.20 16 41 H 0.13 4.07 6.29 -2.91 -0.02 4.05 16 42 H 0.06 2.56 7.67 -2.38 -0.02 2.54 16 43 H 0.06 2.48 7.65 -2.39 -0.02 2.46 16 44 H 0.00 -0.07 8.14 -2.39 -0.02 -0.09 16 45 H 0.00 0.04 8.14 -2.39 -0.02 0.02 16 46 H 0.27 15.07 8.31 -92.71 -0.77 14.30 16 47 H 0.14 3.74 8.06 -2.91 -0.02 3.72 16 Total: -1.00 -71.02 380.59 5.55 -65.47 By element: Atomic # 1 Polarization: 17.87 SS G_CDS: 0.26 Total: 18.12 kcal Atomic # 6 Polarization: -33.93 SS G_CDS: 5.50 Total: -28.43 kcal Atomic # 7 Polarization: -68.99 SS G_CDS: -1.27 Total: -70.25 kcal Atomic # 8 Polarization: -29.43 SS G_CDS: -0.97 Total: -30.40 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 2.03 Total: 45.49 kcal Total: -71.02 5.55 -65.47 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424602794.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.135 kcal (2) G-P(sol) polarization free energy of solvation -71.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.475 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds