Wall clock time and date at job start Tue Mar 31 2020 12:47:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52999 * 109.47383 * 2 1 4 4 C 1.50699 * 109.47357 * 120.00187 * 2 1 3 5 5 C 1.38261 * 119.94786 * 119.99906 * 4 2 1 6 6 C 1.38149 * 120.05760 * 180.02562 * 5 4 2 7 7 C 1.38728 * 119.94322 * 359.97438 * 6 5 4 8 8 O 1.35898 * 120.05692 * 180.02562 * 7 6 5 9 9 C 1.42895 * 117.00373 * 180.02562 * 8 7 6 10 10 C 1.50698 * 109.47405 * 180.02562 * 9 8 7 11 11 O 1.21277 * 120.00330 * 359.97438 * 10 9 8 12 12 N 1.34782 * 120.00135 * 180.02562 * 10 9 8 13 13 C 1.46495 * 120.00258 * 180.02562 * 12 10 9 14 14 C 1.52992 * 109.47269 * 184.79147 * 13 12 10 15 15 C 1.50694 * 115.55114 * 294.81128 * 14 13 12 16 16 H 1.08008 * 119.99906 * 95.20873 * 15 14 13 17 17 C 1.37875 * 120.00314 * 274.92789 * 15 14 13 18 18 N 1.31509 * 119.99913 * 355.42420 * 17 15 14 19 19 Si 1.86807 * 120.00040 * 175.41703 * 17 15 14 20 20 H 1.48494 * 109.47052 * 60.00642 * 19 17 15 21 21 H 1.48500 * 109.47055 * 180.02562 * 19 17 15 22 22 H 1.48498 * 109.47106 * 300.00083 * 19 17 15 23 23 C 1.53003 * 117.49834 * 80.48431 * 14 13 12 24 24 C 1.53006 * 117.49908 * 149.14426 * 14 13 12 25 25 C 1.38733 * 119.88800 * 0.28034 * 7 6 5 26 26 C 1.38147 * 119.94485 * 359.46645 * 25 7 6 27 27 H 1.09005 * 109.47057 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.46817 * 299.99836 * 1 2 3 29 29 H 1.08996 * 109.47648 * 60.00029 * 1 2 3 30 30 H 1.09005 * 109.46909 * 239.99626 * 2 1 3 31 31 H 1.08997 * 109.47319 * 180.02562 * 3 2 1 32 32 H 1.09010 * 109.46830 * 299.99998 * 3 2 1 33 33 H 1.08997 * 109.47284 * 59.99638 * 3 2 1 34 34 H 1.08003 * 119.97398 * 0.02562 * 5 4 2 35 35 H 1.08001 * 120.02503 * 179.97438 * 6 5 4 36 36 H 1.09005 * 109.47210 * 59.99485 * 9 8 7 37 37 H 1.09009 * 109.47039 * 300.00261 * 9 8 7 38 38 H 0.96999 * 119.99637 * 359.97438 * 12 10 9 39 39 H 1.09001 * 109.47395 * 64.78624 * 13 12 10 40 40 H 1.09007 * 109.47080 * 304.78945 * 13 12 10 41 41 H 0.97001 * 119.99960 * 184.99387 * 18 17 15 42 42 H 1.09003 * 117.50034 * 214.99852 * 23 14 13 43 43 H 1.09002 * 117.49971 * 0.02686 * 23 14 13 44 44 H 1.08996 * 117.49810 * 359.97342 * 24 14 13 45 45 H 1.08995 * 117.50078 * 144.97442 * 24 14 13 46 46 H 1.08002 * 120.02632 * 179.71565 * 25 7 6 47 47 H 1.07999 * 119.97386 * 180.23047 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2304 5 6 2.8271 -1.8345 1.1022 6 6 3.2885 -2.4878 2.2287 7 6 2.9541 -2.0148 3.4892 8 8 3.4071 -2.6554 4.5988 9 6 3.0227 -2.1128 5.8636 10 6 3.6144 -2.9483 6.9695 11 8 4.2976 -3.9137 6.7010 12 7 3.3835 -2.6232 8.2570 13 6 3.9591 -3.4350 9.3320 14 6 3.4508 -2.9272 10.6827 15 6 3.8893 -1.5359 11.0608 16 1 3.2478 -0.6923 10.8528 17 6 5.1068 -1.3405 11.6776 18 7 5.8453 -2.3743 12.0172 19 14 5.7075 0.3928 12.0306 20 1 4.7394 1.0801 12.9223 21 1 7.0347 0.3312 12.6940 22 1 5.8264 1.1447 10.7556 23 6 2.0558 -3.3731 11.1256 24 6 3.2975 -3.9504 11.8099 25 6 2.1520 -0.8898 3.6151 26 6 1.6975 -0.2370 2.4857 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 1.8932 -0.5139 -0.8900 31 1 3.1300 1.4425 -0.0005 32 1 1.6766 1.9563 -0.8901 33 1 1.6766 1.9563 0.8899 34 1 3.0876 -2.2021 0.1207 35 1 3.9090 -3.3660 2.1279 36 1 1.9358 -2.1175 5.9459 37 1 3.3888 -1.0893 5.9463 38 1 2.8368 -1.8513 8.4717 39 1 5.0462 -3.3605 9.3015 40 1 3.6625 -4.4757 9.2001 41 1 6.6669 -2.2408 12.5153 42 1 1.4552 -2.6602 11.6905 43 1 1.5004 -4.0287 10.4548 44 1 3.5583 -4.9854 11.5891 45 1 3.5141 -3.6173 12.8249 46 1 1.8865 -0.5224 4.5954 47 1 1.0762 0.6409 2.5832 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000431161838.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:47:42 Heat of formation + Delta-G solvation = -57.126550 kcal Electronic energy + Delta-G solvation = -25452.002299 eV Core-core repulsion = 21792.605385 eV Total energy + Delta-G solvation = -3659.396913 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.45337 -40.50151 -39.00913 -38.34168 -35.63765 -35.06524 -33.96189 -32.02829 -30.82138 -29.36468 -27.91409 -27.79592 -26.67442 -24.25403 -23.41722 -22.92599 -21.50313 -21.12004 -20.90065 -19.34707 -18.60331 -17.73393 -17.40567 -17.15075 -16.65172 -16.37960 -16.25974 -15.85890 -15.46731 -15.30814 -15.05041 -14.75783 -14.41807 -14.34244 -14.20431 -13.89998 -13.78090 -13.49403 -13.37085 -13.25435 -12.96026 -12.90837 -12.78878 -12.39667 -12.16701 -12.10462 -12.01819 -11.70811 -11.65543 -11.48171 -11.41288 -10.98334 -10.94240 -10.44671 -10.09071 -9.94002 -9.91169 -9.03118 -8.09422 -6.24164 0.40669 0.45825 1.44025 1.45765 1.51764 1.53869 1.62495 2.42225 2.74485 2.80132 3.18593 3.46495 3.68200 3.81213 3.89152 3.93797 4.07369 4.10304 4.19869 4.23567 4.39293 4.45335 4.50644 4.53692 4.61681 4.64002 4.71461 4.74268 4.86904 4.97697 4.99988 5.02163 5.05809 5.11228 5.16902 5.28601 5.35944 5.39518 5.45186 5.47056 5.50350 5.55295 5.68646 5.75799 5.77873 5.85372 6.35506 6.38361 6.66281 6.84347 7.25328 7.46174 8.97350 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.017962 B = 0.002357 C = 0.002233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1558.476452 B =11878.395335 C =12537.848723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.051 4.051 3 C -0.144 4.144 4 C -0.118 4.118 5 C -0.081 4.081 6 C -0.167 4.167 7 C 0.102 3.898 8 O -0.322 6.322 9 C 0.051 3.949 10 C 0.503 3.497 11 O -0.586 6.586 12 N -0.690 5.690 13 C 0.179 3.821 14 C 0.002 3.998 15 C -0.504 4.504 16 H 0.068 0.932 17 C 0.022 3.978 18 N -0.909 5.909 19 Si 0.950 3.050 20 H -0.268 1.268 21 H -0.294 1.294 22 H -0.270 1.270 23 C -0.175 4.175 24 C -0.156 4.156 25 C -0.210 4.210 26 C -0.077 4.077 27 H 0.050 0.950 28 H 0.057 0.943 29 H 0.068 0.932 30 H 0.083 0.917 31 H 0.049 0.951 32 H 0.068 0.932 33 H 0.057 0.943 34 H 0.147 0.853 35 H 0.125 0.875 36 H 0.125 0.875 37 H 0.117 0.883 38 H 0.416 0.584 39 H 0.027 0.973 40 H 0.039 0.961 41 H 0.259 0.741 42 H 0.087 0.913 43 H 0.089 0.911 44 H 0.067 0.933 45 H 0.065 0.935 46 H 0.147 0.853 47 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.246 7.814 -22.275 26.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.069 4.069 3 C -0.201 4.201 4 C -0.118 4.118 5 C -0.099 4.099 6 C -0.185 4.185 7 C 0.057 3.943 8 O -0.235 6.235 9 C -0.027 4.027 10 C 0.289 3.711 11 O -0.466 6.466 12 N -0.341 5.341 13 C 0.055 3.945 14 C 0.002 3.998 15 C -0.542 4.542 16 H 0.086 0.914 17 C -0.178 4.178 18 N -0.546 5.546 19 Si 0.776 3.224 20 H -0.193 1.193 21 H -0.221 1.221 22 H -0.195 1.195 23 C -0.212 4.212 24 C -0.194 4.194 25 C -0.229 4.229 26 C -0.095 4.095 27 H 0.069 0.931 28 H 0.076 0.924 29 H 0.087 0.913 30 H 0.101 0.899 31 H 0.068 0.932 32 H 0.087 0.913 33 H 0.076 0.924 34 H 0.165 0.835 35 H 0.143 0.857 36 H 0.143 0.857 37 H 0.134 0.866 38 H 0.252 0.748 39 H 0.046 0.954 40 H 0.058 0.942 41 H 0.068 0.932 42 H 0.106 0.894 43 H 0.107 0.893 44 H 0.086 0.914 45 H 0.083 0.917 46 H 0.164 0.836 47 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -11.437 6.918 -22.398 26.083 hybrid contribution 0.739 0.746 1.075 1.503 sum -10.698 7.665 -21.323 25.057 Atomic orbital electron populations 1.21860 0.93808 1.01867 1.02521 1.20095 0.96286 0.96061 0.94455 1.21866 1.00852 0.94890 1.02519 1.20083 0.99510 0.96622 0.95595 1.21108 0.96105 0.94594 0.98053 1.20625 1.04951 1.02969 0.89990 1.19356 0.95447 0.93029 0.86489 1.86110 1.71270 1.53354 1.12795 1.22536 1.02239 0.97664 0.80285 1.20718 0.80778 0.85187 0.84367 1.90685 1.41009 1.30812 1.84111 1.45666 1.52298 1.32130 1.04035 1.20619 0.95986 0.91829 0.86083 1.19059 0.95381 0.94914 0.90473 1.20661 1.02150 0.91506 1.39900 0.91357 1.25737 0.96763 0.99857 0.95476 1.70110 1.14802 1.31358 1.38356 0.85740 0.77227 0.80916 0.78501 1.19338 1.22061 1.19489 1.23013 0.90733 1.03381 1.04045 1.22399 1.02329 0.96728 0.97952 1.21514 1.02701 0.97225 1.01431 1.21037 0.98143 0.99249 0.91030 0.93090 0.92368 0.91276 0.89852 0.93228 0.91256 0.92386 0.83488 0.85729 0.85743 0.86557 0.74752 0.95430 0.94221 0.93246 0.89442 0.89313 0.91399 0.91657 0.83558 0.83791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.43 9.01 71.98 0.65 -0.78 16 2 C -0.05 -0.58 3.09 -11.54 -0.04 -0.62 16 3 C -0.14 -1.50 9.01 71.98 0.65 -0.85 16 4 C -0.12 -1.92 4.78 -19.85 -0.09 -2.02 16 5 C -0.08 -1.48 9.66 22.25 0.22 -1.26 16 6 C -0.17 -3.96 9.99 22.37 0.22 -3.73 16 7 C 0.10 2.62 6.69 22.51 0.15 2.77 16 8 O -0.32 -10.10 9.67 -73.36 -0.71 -10.81 16 9 C 0.05 1.32 5.22 71.24 0.37 1.69 16 10 C 0.50 18.46 7.91 87.66 0.69 19.15 16 11 O -0.59 -27.57 16.50 16.01 0.26 -27.31 16 12 N -0.69 -25.10 5.48 -463.07 -2.54 -27.64 16 13 C 0.18 8.03 5.50 86.38 0.48 8.50 16 14 C 0.00 0.11 1.47 -52.93 -0.08 0.03 16 15 C -0.50 -24.89 8.59 25.60 0.22 -24.67 16 16 H 0.07 3.18 7.82 -2.91 -0.02 3.16 16 17 C 0.02 1.16 5.43 84.65 0.46 1.62 16 18 N -0.91 -50.91 12.65 21.45 0.27 -50.64 16 19 Si 0.95 41.33 29.54 68.60 2.03 43.36 16 20 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 21 H -0.29 -13.08 7.11 99.48 0.71 -12.37 16 22 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 23 C -0.17 -6.72 9.96 30.62 0.30 -6.42 16 24 C -0.16 -7.03 9.14 30.62 0.28 -6.75 16 25 C -0.21 -4.20 9.04 22.37 0.20 -4.00 16 26 C -0.08 -1.29 8.70 22.26 0.19 -1.09 16 27 H 0.05 0.57 8.14 -2.38 -0.02 0.55 16 28 H 0.06 0.57 7.38 -2.39 -0.02 0.55 16 29 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16 30 H 0.08 0.84 7.87 -2.38 -0.02 0.82 16 31 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 32 H 0.07 0.55 8.14 -2.38 -0.02 0.53 16 33 H 0.06 0.59 7.38 -2.39 -0.02 0.57 16 34 H 0.15 1.95 7.94 -2.91 -0.02 1.92 16 35 H 0.12 2.97 8.06 -2.91 -0.02 2.95 16 36 H 0.12 2.34 7.65 -2.38 -0.02 2.32 16 37 H 0.12 2.43 7.67 -2.38 -0.02 2.41 16 38 H 0.42 12.75 8.33 -92.71 -0.77 11.97 16 39 H 0.03 1.45 8.14 -2.39 -0.02 1.43 16 40 H 0.04 1.78 8.09 -2.38 -0.02 1.76 16 41 H 0.26 14.07 8.32 -92.71 -0.77 13.29 16 42 H 0.09 3.23 8.14 -2.39 -0.02 3.21 16 43 H 0.09 3.02 8.14 -2.39 -0.02 3.00 16 44 H 0.07 2.95 8.14 -2.39 -0.02 2.94 16 45 H 0.06 3.21 8.14 -2.39 -0.02 3.19 16 46 H 0.15 2.28 6.30 -2.91 -0.02 2.26 16 47 H 0.14 1.75 7.09 -2.91 -0.02 1.72 16 Total: -1.00 -67.72 391.54 4.38 -63.35 By element: Atomic # 1 Polarization: 27.94 SS G_CDS: 0.18 Total: 28.12 kcal Atomic # 6 Polarization: -23.30 SS G_CDS: 4.88 Total: -18.42 kcal Atomic # 7 Polarization: -76.01 SS G_CDS: -2.27 Total: -78.28 kcal Atomic # 8 Polarization: -37.68 SS G_CDS: -0.45 Total: -38.12 kcal Atomic # 14 Polarization: 41.33 SS G_CDS: 2.03 Total: 43.36 kcal Total: -67.72 4.38 -63.35 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000431161838.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.220 kcal (2) G-P(sol) polarization free energy of solvation -67.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.347 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds