Wall clock time and date at job start Tue Mar 31 2020 12:39:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52995 * 109.47419 * 2 1 4 4 C 1.53004 * 109.46987 * 120.00080 * 2 1 3 5 5 C 1.53004 * 109.46929 * 179.97438 * 4 2 1 6 6 C 1.53004 * 109.46929 * 180.02562 * 5 4 2 7 7 C 1.53004 * 109.47016 * 59.99877 * 6 5 4 8 8 N 1.46504 * 109.47024 * 60.00289 * 7 6 5 9 9 C 1.46499 * 119.99801 * 241.87084 * 8 7 6 10 10 S 1.65597 * 120.00262 * 61.86500 * 8 7 6 11 11 O 1.42095 * 104.28074 * 206.07509 * 10 8 7 12 12 O 1.42108 * 104.27855 * 333.93141 * 10 8 7 13 13 C 1.81398 * 104.44941 * 89.99746 * 10 8 7 14 14 C 1.52999 * 109.47173 * 179.97438 * 13 10 8 15 15 C 1.50707 * 109.47214 * 180.02562 * 14 13 10 16 16 H 1.08005 * 119.99528 * 0.02562 * 15 14 13 17 17 C 1.37871 * 119.99932 * 180.02562 * 15 14 13 18 18 N 1.31516 * 120.00122 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 119.99780 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.47144 * 60.00544 * 19 17 15 21 21 H 1.48504 * 109.46949 * 180.02562 * 19 17 15 22 22 H 1.48501 * 109.47253 * 300.00632 * 19 17 15 23 23 C 1.52991 * 109.47389 * 300.00088 * 7 6 5 24 24 C 1.53000 * 109.47053 * 60.00076 * 4 2 1 25 25 H 1.09001 * 109.47155 * 59.99945 * 1 2 3 26 26 H 1.09000 * 109.47380 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.46727 * 300.00064 * 1 2 3 28 28 H 1.09001 * 109.46997 * 239.99499 * 2 1 3 29 29 H 1.08995 * 109.47384 * 180.02562 * 3 2 1 30 30 H 1.09001 * 109.47002 * 300.00149 * 3 2 1 31 31 H 1.09004 * 109.47223 * 60.00239 * 3 2 1 32 32 H 1.08995 * 109.47453 * 299.99511 * 4 2 1 33 33 H 1.08995 * 109.46930 * 300.00171 * 5 4 2 34 34 H 1.09000 * 109.47132 * 60.00017 * 5 4 2 35 35 H 1.09001 * 109.46808 * 300.00450 * 6 5 4 36 36 H 1.08995 * 109.46951 * 180.02562 * 6 5 4 37 37 H 1.09001 * 109.46911 * 179.97438 * 7 6 5 38 38 H 1.08994 * 109.47616 * 95.51746 * 9 8 7 39 39 H 1.09004 * 109.47067 * 215.52151 * 9 8 7 40 40 H 1.09000 * 109.47182 * 335.51526 * 9 8 7 41 41 H 1.08998 * 109.47721 * 300.00599 * 13 10 8 42 42 H 1.08998 * 109.46688 * 60.00280 * 13 10 8 43 43 H 1.08998 * 109.47613 * 300.01066 * 14 13 10 44 44 H 1.08998 * 109.46758 * 60.00723 * 14 13 10 45 45 H 0.97002 * 119.99753 * 179.97438 * 18 17 15 46 46 H 1.09001 * 109.47542 * 300.00105 * 23 7 6 47 47 H 1.09000 * 109.47149 * 180.02562 * 23 7 6 48 48 H 1.09008 * 109.47102 * 299.99420 * 24 4 2 49 49 H 1.08991 * 109.47674 * 59.99900 * 24 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5700 -0.7218 1.2489 6 6 4.0800 -1.4437 2.4979 7 6 3.5694 -2.8860 2.4975 8 7 4.0573 -3.5765 1.3010 9 6 3.1056 -4.0965 0.3162 10 16 5.6845 -3.7689 1.0617 11 8 5.8216 -3.8725 -0.3488 12 8 6.2739 -2.6922 1.7779 13 6 6.0750 -5.3517 1.8573 14 6 7.5684 -5.6458 1.7021 15 6 7.8926 -6.9611 2.3625 16 1 7.1115 -7.5305 2.8442 17 6 9.1864 -7.4375 2.3516 18 7 10.1376 -6.7439 1.7653 19 14 9.5881 -9.0682 3.1695 20 1 8.8016 -10.1514 2.5267 21 1 11.0379 -9.3529 3.0201 22 1 9.2443 -8.9962 4.6124 23 6 2.0395 -2.8855 2.4978 24 6 1.5300 -2.1638 1.2492 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.8933 -0.5139 -0.8899 29 1 3.1300 1.4424 -0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6768 1.9563 0.8900 32 1 1.6767 -0.2075 2.1392 33 1 3.9329 -1.2359 0.3590 34 1 3.9337 0.3057 1.2487 35 1 3.7169 -0.9300 3.3881 36 1 5.1699 -1.4437 2.4979 37 1 3.9331 -3.4004 3.3871 38 1 2.9763 -3.3680 -0.4842 39 1 3.4863 -5.0294 -0.0996 40 1 2.1459 -4.2793 0.7996 41 1 5.8229 -5.2981 2.9163 42 1 5.4975 -6.1472 1.3862 43 1 7.8201 -5.6996 0.6429 44 1 8.1461 -4.8504 2.1729 45 1 11.0479 -7.0789 1.7580 46 1 1.6764 -2.3718 3.3880 47 1 1.6758 -3.9130 2.4980 48 1 0.4399 -2.1638 1.2493 49 1 1.8932 -2.6776 0.3593 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000432341790.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:39:16 Heat of formation + Delta-G solvation = -81.640004 kcal Electronic energy + Delta-G solvation = -26613.355102 eV Core-core repulsion = 23088.339157 eV Total energy + Delta-G solvation = -3525.015945 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.181 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.03996 -36.68235 -36.41244 -35.39006 -33.87944 -32.88898 -31.28956 -31.12901 -29.32526 -27.37239 -25.97160 -25.48869 -22.68571 -22.41371 -21.59197 -20.22516 -19.85667 -18.32679 -17.22948 -16.61547 -16.20788 -15.73984 -15.38759 -14.87089 -14.55668 -14.42590 -14.35927 -14.14015 -13.69535 -13.39923 -13.28864 -13.20739 -12.69886 -12.50004 -12.40961 -12.36439 -11.91802 -11.75404 -11.74518 -11.56447 -11.51122 -11.42959 -11.26936 -11.07484 -11.06279 -10.96375 -10.80056 -10.73793 -10.42355 -10.36951 -10.18406 -10.09561 -9.75970 -9.54284 -9.26143 -8.64481 -8.49870 -6.12047 -4.17756 0.80183 3.05937 3.27119 3.31885 3.33764 4.30290 4.38664 4.47118 4.56686 4.63369 4.65900 4.77629 4.92762 5.06571 5.11411 5.22881 5.27021 5.31310 5.40758 5.44077 5.49122 5.52770 5.55954 5.57027 5.61463 5.66157 5.69676 5.72479 5.77003 5.80375 5.83763 5.90899 5.97239 5.99699 6.10797 6.18382 6.21342 6.28325 6.39244 6.47778 6.50993 6.78212 6.82513 7.30428 7.36827 7.80708 8.18212 8.85408 9.46916 10.98964 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.031571 B = 0.003105 C = 0.003031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 886.676061 B = 9014.574645 C = 9235.490137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.094 4.094 3 C -0.149 4.149 4 C -0.079 4.079 5 C -0.110 4.110 6 C -0.167 4.167 7 C 0.159 3.841 8 N -1.002 6.002 9 C 0.088 3.912 10 S 2.590 3.410 11 O -0.965 6.965 12 O -0.958 6.958 13 C -0.592 4.592 14 C 0.029 3.971 15 C -0.521 4.521 16 H 0.060 0.940 17 C 0.058 3.942 18 N -0.891 5.891 19 Si 0.900 3.100 20 H -0.275 1.275 21 H -0.285 1.285 22 H -0.275 1.275 23 C -0.118 4.118 24 C -0.147 4.147 25 H 0.050 0.950 26 H 0.057 0.943 27 H 0.051 0.949 28 H 0.068 0.932 29 H 0.059 0.941 30 H 0.050 0.950 31 H 0.052 0.948 32 H 0.065 0.935 33 H 0.059 0.941 34 H 0.062 0.938 35 H 0.065 0.935 36 H 0.120 0.880 37 H 0.072 0.928 38 H 0.059 0.941 39 H 0.063 0.937 40 H 0.082 0.918 41 H 0.118 0.882 42 H 0.117 0.883 43 H 0.032 0.968 44 H 0.033 0.967 45 H 0.266 0.734 46 H 0.072 0.928 47 H 0.068 0.932 48 H 0.061 0.939 49 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.612 11.480 -0.514 23.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.112 4.112 3 C -0.207 4.207 4 C -0.097 4.097 5 C -0.147 4.147 6 C -0.206 4.206 7 C 0.053 3.947 8 N -0.839 5.839 9 C -0.057 4.057 10 S 2.689 3.311 11 O -0.955 6.955 12 O -0.948 6.948 13 C -0.725 4.725 14 C -0.010 4.010 15 C -0.561 4.561 16 H 0.079 0.921 17 C -0.145 4.145 18 N -0.529 5.529 19 Si 0.727 3.273 20 H -0.201 1.201 21 H -0.210 1.210 22 H -0.201 1.201 23 C -0.157 4.157 24 C -0.184 4.184 25 H 0.069 0.931 26 H 0.076 0.924 27 H 0.070 0.930 28 H 0.087 0.913 29 H 0.078 0.922 30 H 0.069 0.931 31 H 0.071 0.929 32 H 0.083 0.917 33 H 0.078 0.922 34 H 0.080 0.920 35 H 0.084 0.916 36 H 0.138 0.862 37 H 0.090 0.910 38 H 0.077 0.923 39 H 0.081 0.919 40 H 0.100 0.900 41 H 0.136 0.864 42 H 0.135 0.865 43 H 0.050 0.950 44 H 0.051 0.949 45 H 0.075 0.925 46 H 0.091 0.909 47 H 0.087 0.913 48 H 0.079 0.921 49 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -19.901 12.118 -1.042 23.323 hybrid contribution -0.020 -1.445 0.838 1.670 sum -19.921 10.674 -0.203 22.601 Atomic orbital electron populations 1.21885 0.95591 1.01670 1.01290 1.21154 0.95362 0.96174 0.98545 1.21894 1.01511 0.95999 1.01262 1.21187 0.95754 0.95418 0.97363 1.21531 0.94370 1.00174 0.98666 1.22633 1.05720 0.94261 0.98013 1.20798 0.94791 0.92801 0.86310 1.57676 1.24732 1.70781 1.30728 1.21754 0.94409 0.98235 0.91304 1.05758 0.72171 0.78017 0.75133 1.93531 1.84477 1.88011 1.29521 1.93411 1.75818 1.50758 1.74838 1.30487 1.10611 1.19054 1.12344 1.18943 0.83971 0.99210 0.98873 1.20975 0.94108 1.04491 1.36479 0.92134 1.25067 0.96296 0.97742 0.95360 1.69947 1.01449 1.38398 1.43078 0.86533 0.77399 0.83473 0.79890 1.20074 1.21043 1.20073 1.21726 0.94174 1.00775 0.99013 1.22371 1.00080 0.96092 0.99870 0.93135 0.92431 0.92982 0.91313 0.92199 0.93113 0.92924 0.91684 0.92177 0.91968 0.91611 0.86215 0.90968 0.92295 0.91866 0.89975 0.86382 0.86473 0.94979 0.94873 0.92464 0.90945 0.91296 0.92061 0.88877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.09 8.84 37.16 0.33 -0.76 16 2 C -0.09 -0.82 2.51 -90.62 -0.23 -1.04 16 3 C -0.15 -1.27 8.84 37.16 0.33 -0.94 16 4 C -0.08 -0.74 1.78 -90.62 -0.16 -0.90 16 5 C -0.11 -1.30 4.69 -26.73 -0.13 -1.42 16 6 C -0.17 -2.11 5.19 -26.73 -0.14 -2.25 16 7 C 0.16 1.86 3.13 -67.93 -0.21 1.65 16 8 N -1.00 -13.37 2.45 -114.61 -0.28 -13.65 16 9 C 0.09 0.97 7.97 59.85 0.48 1.45 16 10 S 2.59 46.68 5.35 -107.50 -0.58 46.11 16 11 O -0.97 -20.15 17.19 -57.54 -0.99 -21.14 16 12 O -0.96 -19.01 14.14 -57.54 -0.81 -19.82 16 13 C -0.59 -11.50 6.12 37.16 0.23 -11.27 16 14 C 0.03 0.75 4.98 -27.88 -0.14 0.61 16 15 C -0.52 -14.53 9.11 -34.44 -0.31 -14.84 16 16 H 0.06 1.60 7.74 -52.48 -0.41 1.19 16 17 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 18 N -0.89 -26.63 13.29 55.43 0.74 -25.89 16 19 Si 0.90 21.28 29.54 -169.99 -5.02 16.26 16 20 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 21 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 22 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 23 C -0.12 -1.05 4.92 -26.76 -0.13 -1.18 16 24 C -0.15 -1.28 4.14 -26.76 -0.11 -1.39 16 25 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 26 H 0.06 0.40 6.43 -51.93 -0.33 0.07 16 27 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.06 0.55 6.43 -51.93 -0.33 0.21 16 30 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 33 H 0.06 0.81 7.60 -51.93 -0.39 0.42 16 34 H 0.06 0.71 6.43 -51.93 -0.33 0.38 16 35 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.12 1.88 4.88 -51.93 -0.25 1.62 16 37 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.06 0.64 6.81 -51.93 -0.35 0.29 16 39 H 0.06 0.70 7.99 -51.93 -0.41 0.28 16 40 H 0.08 0.69 4.82 -51.93 -0.25 0.44 16 41 H 0.12 2.07 8.14 -51.93 -0.42 1.65 16 42 H 0.12 2.07 8.14 -51.92 -0.42 1.64 16 43 H 0.03 0.88 8.14 -51.93 -0.42 0.45 16 44 H 0.03 0.90 8.14 -51.93 -0.42 0.48 16 45 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 46 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 47 H 0.07 0.55 7.02 -51.93 -0.36 0.19 16 48 H 0.06 0.46 6.43 -51.92 -0.33 0.13 16 49 H 0.09 0.84 3.51 -51.93 -0.18 0.66 16 LS Contribution 371.20 15.07 5.59 5.59 Total: -1.00 -32.95 371.20 -10.23 -43.18 By element: Atomic # 1 Polarization: 8.70 SS G_CDS: -8.59 Total: 0.12 kcal Atomic # 6 Polarization: -30.44 SS G_CDS: -0.30 Total: -30.74 kcal Atomic # 7 Polarization: -40.00 SS G_CDS: 0.46 Total: -39.55 kcal Atomic # 8 Polarization: -39.16 SS G_CDS: -1.80 Total: -40.96 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Atomic # 16 Polarization: 46.68 SS G_CDS: -0.58 Total: 46.11 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -32.95 -10.23 -43.18 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000432341790.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.463 kcal (2) G-P(sol) polarization free energy of solvation -32.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.177 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds