Wall clock time and date at job start Tue Mar 31 2020 12:39:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52995 * 109.47419 * 2 1 4 4 C 1.53004 * 109.46987 * 120.00080 * 2 1 3 5 5 C 1.53004 * 109.46929 * 179.97438 * 4 2 1 6 6 C 1.53004 * 109.46929 * 180.02562 * 5 4 2 7 7 C 1.53004 * 109.47016 * 59.99877 * 6 5 4 8 8 N 1.46504 * 109.47024 * 60.00289 * 7 6 5 9 9 C 1.46499 * 119.99801 * 241.87084 * 8 7 6 10 10 S 1.65597 * 120.00262 * 61.86500 * 8 7 6 11 11 O 1.42095 * 104.28074 * 206.07509 * 10 8 7 12 12 O 1.42108 * 104.27855 * 333.93141 * 10 8 7 13 13 C 1.81398 * 104.44941 * 89.99746 * 10 8 7 14 14 C 1.52999 * 109.47173 * 179.97438 * 13 10 8 15 15 C 1.50707 * 109.47214 * 180.02562 * 14 13 10 16 16 H 1.08005 * 119.99528 * 0.02562 * 15 14 13 17 17 C 1.37871 * 119.99932 * 180.02562 * 15 14 13 18 18 N 1.31516 * 120.00122 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 119.99780 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.47144 * 60.00544 * 19 17 15 21 21 H 1.48504 * 109.46949 * 180.02562 * 19 17 15 22 22 H 1.48501 * 109.47253 * 300.00632 * 19 17 15 23 23 C 1.52991 * 109.47389 * 300.00088 * 7 6 5 24 24 C 1.53000 * 109.47053 * 60.00076 * 4 2 1 25 25 H 1.09001 * 109.47155 * 59.99945 * 1 2 3 26 26 H 1.09000 * 109.47380 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.46727 * 300.00064 * 1 2 3 28 28 H 1.09001 * 109.46997 * 239.99499 * 2 1 3 29 29 H 1.08995 * 109.47384 * 180.02562 * 3 2 1 30 30 H 1.09001 * 109.47002 * 300.00149 * 3 2 1 31 31 H 1.09004 * 109.47223 * 60.00239 * 3 2 1 32 32 H 1.08995 * 109.47453 * 299.99511 * 4 2 1 33 33 H 1.08995 * 109.46930 * 300.00171 * 5 4 2 34 34 H 1.09000 * 109.47132 * 60.00017 * 5 4 2 35 35 H 1.09001 * 109.46808 * 300.00450 * 6 5 4 36 36 H 1.08995 * 109.46951 * 180.02562 * 6 5 4 37 37 H 1.09001 * 109.46911 * 179.97438 * 7 6 5 38 38 H 1.08994 * 109.47616 * 95.51746 * 9 8 7 39 39 H 1.09004 * 109.47067 * 215.52151 * 9 8 7 40 40 H 1.09000 * 109.47182 * 335.51526 * 9 8 7 41 41 H 1.08998 * 109.47721 * 300.00599 * 13 10 8 42 42 H 1.08998 * 109.46688 * 60.00280 * 13 10 8 43 43 H 1.08998 * 109.47613 * 300.01066 * 14 13 10 44 44 H 1.08998 * 109.46758 * 60.00723 * 14 13 10 45 45 H 0.97002 * 119.99753 * 179.97438 * 18 17 15 46 46 H 1.09001 * 109.47542 * 300.00105 * 23 7 6 47 47 H 1.09000 * 109.47149 * 180.02562 * 23 7 6 48 48 H 1.09008 * 109.47102 * 299.99420 * 24 4 2 49 49 H 1.08991 * 109.47674 * 59.99900 * 24 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5700 -0.7218 1.2489 6 6 4.0800 -1.4437 2.4979 7 6 3.5694 -2.8860 2.4975 8 7 4.0573 -3.5765 1.3010 9 6 3.1056 -4.0965 0.3162 10 16 5.6845 -3.7689 1.0617 11 8 5.8216 -3.8725 -0.3488 12 8 6.2739 -2.6922 1.7779 13 6 6.0750 -5.3517 1.8573 14 6 7.5684 -5.6458 1.7021 15 6 7.8926 -6.9611 2.3625 16 1 7.1115 -7.5305 2.8442 17 6 9.1864 -7.4375 2.3516 18 7 10.1376 -6.7439 1.7653 19 14 9.5881 -9.0682 3.1695 20 1 8.8016 -10.1514 2.5267 21 1 11.0379 -9.3529 3.0201 22 1 9.2443 -8.9962 4.6124 23 6 2.0395 -2.8855 2.4978 24 6 1.5300 -2.1638 1.2492 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.8933 -0.5139 -0.8899 29 1 3.1300 1.4424 -0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6768 1.9563 0.8900 32 1 1.6767 -0.2075 2.1392 33 1 3.9329 -1.2359 0.3590 34 1 3.9337 0.3057 1.2487 35 1 3.7169 -0.9300 3.3881 36 1 5.1699 -1.4437 2.4979 37 1 3.9331 -3.4004 3.3871 38 1 2.9763 -3.3680 -0.4842 39 1 3.4863 -5.0294 -0.0996 40 1 2.1459 -4.2793 0.7996 41 1 5.8229 -5.2981 2.9163 42 1 5.4975 -6.1472 1.3862 43 1 7.8201 -5.6996 0.6429 44 1 8.1461 -4.8504 2.1729 45 1 11.0479 -7.0789 1.7580 46 1 1.6764 -2.3718 3.3880 47 1 1.6758 -3.9130 2.4980 48 1 0.4399 -2.1638 1.2493 49 1 1.8932 -2.6776 0.3593 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000432341790.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:39:15 Heat of formation + Delta-G solvation = -102.034979 kcal Electronic energy + Delta-G solvation = -26614.239494 eV Core-core repulsion = 23088.339157 eV Total energy + Delta-G solvation = -3525.900337 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.181 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.88453 -38.20783 -37.27865 -36.92325 -35.90810 -33.80639 -33.13236 -32.09128 -30.14362 -28.01636 -27.63403 -26.76655 -23.71474 -23.34479 -23.20583 -21.20609 -20.58284 -19.74275 -18.86115 -18.10880 -17.33365 -17.13802 -16.69034 -16.53570 -15.95094 -15.34291 -15.22628 -15.11442 -14.94775 -14.54854 -14.44355 -14.08792 -14.06501 -13.79052 -13.72234 -13.20774 -13.11191 -13.05884 -12.91756 -12.88813 -12.77894 -12.65275 -12.45676 -12.40034 -12.26170 -12.18957 -12.06200 -11.88551 -11.75778 -11.65541 -11.51782 -11.17609 -10.94349 -10.82382 -10.65748 -10.42384 -9.76850 -8.27448 -6.42295 -0.67007 1.39414 1.43292 1.51556 1.78833 2.36972 2.87943 3.05441 3.20026 3.65087 3.77643 3.86869 3.99021 4.07938 4.08634 4.18418 4.30051 4.33907 4.47286 4.52130 4.64216 4.68588 4.72707 4.72892 4.76912 4.82047 4.86367 4.89699 4.94381 4.96022 5.07022 5.13835 5.16860 5.23414 5.24752 5.26967 5.27944 5.35392 5.40742 5.44696 5.51265 5.58585 5.66135 5.67418 5.77495 5.87497 6.04432 6.71101 7.28077 8.84694 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.031571 B = 0.003105 C = 0.003031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 886.676061 B = 9014.574645 C = 9235.490137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.094 4.094 3 C -0.150 4.150 4 C -0.072 4.072 5 C -0.110 4.110 6 C -0.171 4.171 7 C 0.149 3.851 8 N -0.988 5.988 9 C 0.077 3.923 10 S 2.608 3.392 11 O -0.998 6.998 12 O -0.981 6.981 13 C -0.592 4.592 14 C 0.023 3.977 15 C -0.542 4.542 16 H 0.075 0.925 17 C -0.004 4.004 18 N -0.935 5.935 19 Si 0.975 3.025 20 H -0.262 1.262 21 H -0.283 1.283 22 H -0.262 1.262 23 C -0.111 4.111 24 C -0.149 4.149 25 H 0.052 0.948 26 H 0.065 0.935 27 H 0.057 0.943 28 H 0.056 0.944 29 H 0.045 0.955 30 H 0.055 0.945 31 H 0.058 0.942 32 H 0.074 0.926 33 H 0.035 0.965 34 H 0.057 0.943 35 H 0.085 0.915 36 H 0.084 0.916 37 H 0.079 0.921 38 H 0.060 0.940 39 H 0.062 0.938 40 H 0.119 0.881 41 H 0.139 0.861 42 H 0.137 0.863 43 H 0.002 0.998 44 H 0.005 0.995 45 H 0.268 0.732 46 H 0.090 0.910 47 H 0.087 0.913 48 H 0.083 0.917 49 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.930 10.540 0.857 26.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.113 4.113 3 C -0.207 4.207 4 C -0.091 4.091 5 C -0.148 4.148 6 C -0.210 4.210 7 C 0.044 3.956 8 N -0.827 5.827 9 C -0.067 4.067 10 S 2.706 3.294 11 O -0.989 6.989 12 O -0.971 6.971 13 C -0.724 4.724 14 C -0.016 4.016 15 C -0.581 4.581 16 H 0.093 0.907 17 C -0.203 4.203 18 N -0.574 5.574 19 Si 0.798 3.202 20 H -0.187 1.187 21 H -0.209 1.209 22 H -0.187 1.187 23 C -0.150 4.150 24 C -0.185 4.185 25 H 0.071 0.929 26 H 0.083 0.917 27 H 0.076 0.924 28 H 0.075 0.925 29 H 0.064 0.936 30 H 0.074 0.926 31 H 0.078 0.922 32 H 0.092 0.908 33 H 0.054 0.946 34 H 0.076 0.924 35 H 0.104 0.896 36 H 0.102 0.898 37 H 0.097 0.903 38 H 0.078 0.922 39 H 0.081 0.919 40 H 0.137 0.863 41 H 0.157 0.843 42 H 0.155 0.845 43 H 0.021 0.979 44 H 0.023 0.977 45 H 0.077 0.923 46 H 0.109 0.891 47 H 0.105 0.895 48 H 0.101 0.899 49 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -23.219 11.167 0.331 25.767 hybrid contribution 0.975 -1.031 0.391 1.472 sum -22.243 10.136 0.722 24.454 Atomic orbital electron populations 1.21843 0.94073 1.02316 1.01732 1.21148 0.96559 0.95844 0.97747 1.21894 1.00638 0.96307 1.01871 1.21138 0.93471 0.96481 0.97997 1.21524 0.96597 0.99459 0.97218 1.22599 1.03564 0.95637 0.99240 1.21108 0.97198 0.91820 0.85512 1.57282 1.22856 1.70610 1.31989 1.22098 0.95225 0.98182 0.91219 1.04967 0.73494 0.76966 0.73945 1.93478 1.85747 1.88158 1.31488 1.93413 1.77547 1.51093 1.75022 1.30404 1.06323 1.21279 1.14359 1.18786 0.88167 0.98114 0.96548 1.21498 0.94822 1.05313 1.36434 0.90651 1.26149 0.96199 1.02000 0.95930 1.70102 1.01967 1.40645 1.44710 0.85351 0.77205 0.78389 0.79243 1.18686 1.20861 1.18662 1.21748 0.91186 1.02227 0.99842 1.22401 1.01367 0.95182 0.99590 0.92881 0.91651 0.92399 0.92522 0.93601 0.92584 0.92245 0.90770 0.94587 0.92430 0.89636 0.89751 0.90258 0.92182 0.91924 0.86337 0.84309 0.84511 0.97937 0.97658 0.92333 0.89147 0.89452 0.89864 0.89380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.70 8.84 71.98 0.64 -1.06 16 2 C -0.09 -1.49 2.51 -10.79 -0.03 -1.51 16 3 C -0.15 -2.40 8.84 71.98 0.64 -1.76 16 4 C -0.07 -1.20 1.78 -10.79 -0.02 -1.22 16 5 C -0.11 -2.57 4.69 30.60 0.14 -2.43 16 6 C -0.17 -4.21 5.19 30.60 0.16 -4.05 16 7 C 0.15 3.18 3.13 44.99 0.14 3.32 16 8 N -0.99 -25.26 2.45 -516.52 -1.26 -26.52 16 9 C 0.08 1.54 7.97 127.77 1.02 2.55 16 10 S 2.61 96.41 5.35 -56.49 -0.30 96.11 16 11 O -1.00 -43.26 17.19 -127.65 -2.19 -45.46 16 12 O -0.98 -40.72 14.14 -127.65 -1.81 -42.53 16 13 C -0.59 -23.16 6.12 71.98 0.44 -22.72 16 14 C 0.02 1.22 4.98 29.85 0.15 1.37 16 15 C -0.54 -30.57 9.11 25.60 0.23 -30.34 16 16 H 0.08 3.91 7.74 -2.91 -0.02 3.89 16 17 C 0.00 -0.25 5.46 84.65 0.46 0.21 16 18 N -0.93 -57.67 13.29 21.45 0.28 -57.39 16 19 Si 0.98 43.56 29.54 68.60 2.03 45.58 16 20 H -0.26 -11.09 7.11 99.48 0.71 -10.39 16 21 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 22 H -0.26 -11.07 7.11 99.48 0.71 -10.37 16 23 C -0.11 -1.53 4.92 30.58 0.15 -1.38 16 24 C -0.15 -2.05 4.14 30.58 0.13 -1.92 16 25 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 26 H 0.06 0.68 6.43 -2.39 -0.02 0.67 16 27 H 0.06 0.64 8.14 -2.38 -0.02 0.62 16 28 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 29 H 0.04 0.85 6.43 -2.39 -0.02 0.83 16 30 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 31 H 0.06 0.86 8.14 -2.38 -0.02 0.84 16 32 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 33 H 0.04 0.99 7.60 -2.39 -0.02 0.98 16 34 H 0.06 1.35 6.43 -2.39 -0.02 1.33 16 35 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 36 H 0.08 2.73 4.88 -2.43 -0.01 2.72 16 37 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 38 H 0.06 1.22 6.81 -2.39 -0.02 1.21 16 39 H 0.06 1.28 7.99 -2.38 -0.02 1.26 16 40 H 0.12 1.52 4.82 -2.39 -0.01 1.51 16 41 H 0.14 4.76 8.14 -2.39 -0.02 4.74 16 42 H 0.14 4.72 8.14 -2.39 -0.02 4.70 16 43 H 0.00 0.13 8.14 -2.39 -0.02 0.12 16 44 H 0.01 0.30 8.14 -2.39 -0.02 0.28 16 45 H 0.27 15.44 8.31 -92.71 -0.77 14.67 16 46 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 47 H 0.09 0.94 7.02 -2.39 -0.02 0.92 16 48 H 0.08 0.85 6.43 -2.38 -0.02 0.83 16 49 H 0.09 1.33 3.51 -2.39 -0.01 1.32 16 Total: -1.00 -74.35 371.20 1.91 -72.44 By element: Atomic # 1 Polarization: 17.79 SS G_CDS: 0.91 Total: 18.70 kcal Atomic # 6 Polarization: -65.19 SS G_CDS: 4.25 Total: -60.94 kcal Atomic # 7 Polarization: -82.93 SS G_CDS: -0.98 Total: -83.91 kcal Atomic # 8 Polarization: -83.98 SS G_CDS: -4.00 Total: -87.98 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 2.03 Total: 45.58 kcal Atomic # 16 Polarization: 96.41 SS G_CDS: -0.30 Total: 96.11 kcal Total: -74.35 1.91 -72.44 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000432341790.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.593 kcal (2) G-P(sol) polarization free energy of solvation -74.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.442 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds