Wall clock time and date at job start Tue Mar 31 2020 13:40:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.53000 * 109.47049 * 2 1 4 4 C 1.53003 * 109.46700 * 65.00453 * 3 2 1 5 5 C 1.53001 * 109.46975 * 185.80778 * 4 3 2 6 6 C 1.52999 * 109.46920 * 185.00206 * 3 2 1 7 7 N 1.46899 * 109.46880 * 173.29056 * 6 3 2 8 8 C 1.46899 * 111.00231 * 287.92970 * 7 6 3 9 9 C 1.50701 * 109.47193 * 295.16060 * 8 7 6 10 10 H 1.08003 * 119.99770 * 4.63237 * 9 8 7 11 11 C 1.37876 * 120.00582 * 184.63524 * 9 8 7 12 12 N 1.31518 * 119.99519 * 359.97438 * 11 9 8 13 13 Si 1.86794 * 120.00258 * 180.02562 * 11 9 8 14 14 H 1.48499 * 109.47076 * 89.99897 * 13 11 9 15 15 H 1.48503 * 109.47117 * 209.99931 * 13 11 9 16 16 H 1.48501 * 109.47079 * 329.99546 * 13 11 9 17 17 C 1.46899 * 111.00079 * 163.97606 * 7 6 3 18 18 C 1.52998 * 109.47148 * 206.38587 * 17 7 6 19 19 H 1.09001 * 110.01633 * 52.39134 * 18 17 7 20 20 C 1.53883 * 110.02877 * 173.77300 * 18 17 7 21 21 C 1.54162 * 108.70543 * 166.46937 * 20 18 17 22 22 S 1.82915 * 105.08677 * 332.09020 * 21 20 18 23 23 O 1.42107 * 109.35369 * 115.52216 * 22 21 20 24 24 O 1.42099 * 109.35578 * 248.59027 * 22 21 20 25 25 C 1.55050 * 110.02834 * 290.96014 * 18 17 7 26 26 H 1.09004 * 109.47189 * 59.99694 * 1 2 3 27 27 H 1.09003 * 109.46927 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.46747 * 299.99618 * 1 2 3 29 29 H 1.09003 * 109.46647 * 240.00693 * 2 1 3 30 30 H 1.08996 * 109.47391 * 120.00549 * 2 1 3 31 31 H 1.08999 * 109.47457 * 305.00561 * 3 2 1 32 32 H 1.09003 * 109.47026 * 305.80632 * 4 3 2 33 33 H 1.08992 * 109.47435 * 65.80984 * 4 3 2 34 34 H 1.09001 * 109.47554 * 171.51257 * 5 4 3 35 35 H 1.08994 * 109.47091 * 291.51398 * 5 4 3 36 36 H 1.09007 * 109.47153 * 51.51267 * 5 4 3 37 37 H 1.08991 * 109.46937 * 53.29002 * 6 3 2 38 38 H 1.08997 * 109.47041 * 293.28652 * 6 3 2 39 39 H 1.09003 * 109.47020 * 55.15339 * 8 7 6 40 40 H 1.09001 * 109.47748 * 175.15818 * 8 7 6 41 41 H 0.96995 * 119.99866 * 179.97438 * 12 11 9 42 42 H 1.09001 * 109.47079 * 326.38357 * 17 7 6 43 43 H 1.09001 * 109.47267 * 86.38463 * 17 7 6 44 44 H 1.08999 * 109.64381 * 286.32430 * 20 18 17 45 45 H 1.08999 * 109.64105 * 46.74689 * 20 18 17 46 46 H 1.09005 * 110.32046 * 90.99193 * 21 20 18 47 47 H 1.09000 * 110.31658 * 213.08601 * 21 20 18 48 48 H 1.08999 * 110.78756 * 316.55044 * 25 18 17 49 49 H 1.09007 * 110.78516 * 80.00652 * 25 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 1.6353 2.1264 1.3075 5 6 2.0173 3.6068 1.2481 6 6 3.5649 1.4443 -0.1258 7 7 4.0412 2.8245 -0.2872 8 6 3.7073 3.3442 -1.6201 9 6 4.4514 2.5563 -2.6673 10 1 5.0478 1.7033 -2.3789 11 6 4.3709 2.9243 -3.9936 12 7 3.6443 3.9628 -4.3448 13 14 5.2926 1.9472 -5.2917 14 1 4.4234 0.8553 -5.7992 15 1 5.6663 2.8448 -6.4142 16 1 6.5208 1.3650 -4.6936 17 6 5.4851 2.9163 -0.0330 18 6 5.8313 4.3304 0.4375 19 1 5.1929 4.6116 1.2751 20 6 7.3105 4.3993 0.8559 21 6 7.7165 5.8800 0.9949 22 16 6.6216 6.7841 -0.1580 23 8 5.7759 7.6550 0.5809 24 8 7.3923 7.2937 -1.2376 25 6 5.6529 5.3366 -0.7286 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3632 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8901 30 1 1.8935 -0.5139 0.8899 31 1 1.6054 1.9816 -0.8417 32 1 0.5583 2.0344 1.4474 33 1 2.1520 1.6511 2.1412 34 1 1.5973 4.1253 2.1100 35 1 3.1029 3.7027 1.2599 36 1 1.6236 4.0472 0.3319 37 1 3.8585 0.8547 -0.9941 38 1 4.0041 1.0112 0.7729 39 1 2.6345 3.2498 -1.7886 40 1 3.9941 4.3939 -1.6832 41 1 3.5879 4.2219 -5.2778 42 1 5.7646 2.1982 0.7380 43 1 6.0304 2.6950 -0.9505 44 1 7.4453 3.8911 1.8107 45 1 7.9288 3.9215 0.0960 46 1 7.5552 6.2224 2.0172 47 1 8.7605 6.0143 0.7118 48 1 6.0666 4.9343 -1.6533 49 1 4.6026 5.5994 -0.8555 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000434543122.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:40:04 Heat of formation + Delta-G solvation = -82.506895 kcal Electronic energy + Delta-G solvation = -26926.658413 eV Core-core repulsion = 23401.604877 eV Total energy + Delta-G solvation = -3525.053536 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.181 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -38.57796 -36.77444 -36.62908 -35.68213 -34.51388 -32.43696 -31.12640 -29.99725 -27.83611 -27.62841 -25.52907 -23.52169 -23.30972 -22.25863 -20.77313 -19.81476 -19.04833 -18.55464 -16.86294 -16.48989 -15.93428 -15.42059 -15.13326 -14.75700 -14.66836 -14.43233 -14.16637 -14.02841 -13.54503 -13.33704 -12.96933 -12.59166 -12.50095 -12.04340 -11.99312 -11.83856 -11.77116 -11.74315 -11.68384 -11.50678 -11.38619 -11.07367 -11.04577 -10.88624 -10.78606 -10.62820 -10.47623 -10.39969 -10.24522 -10.10355 -10.05592 -9.89487 -9.75566 -9.54877 -9.32686 -8.43479 -7.11770 -6.09054 -4.17559 0.36273 2.84336 3.21835 3.30484 3.31111 3.87232 4.23232 4.34318 4.47861 4.73077 4.88329 4.96375 5.15017 5.20105 5.25514 5.30963 5.40764 5.52522 5.56299 5.63967 5.77270 5.81616 5.84264 5.91518 5.93482 6.03727 6.10817 6.15461 6.17814 6.26281 6.31097 6.34339 6.43077 6.47198 6.57326 6.61424 6.73956 6.75399 6.87006 7.01648 7.23164 7.29688 7.50423 7.84748 7.99813 8.21845 8.22977 8.92336 9.48512 10.94950 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.009964 B = 0.005673 C = 0.004130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2809.437025 B = 4934.153917 C = 6778.614500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.118 4.118 3 C -0.083 4.083 4 C -0.103 4.103 5 C -0.153 4.153 6 C 0.067 3.933 7 N -0.532 5.532 8 C 0.171 3.829 9 C -0.548 4.548 10 H 0.055 0.945 11 C 0.067 3.933 12 N -0.887 5.887 13 Si 0.882 3.118 14 H -0.282 1.282 15 H -0.286 1.286 16 H -0.275 1.275 17 C 0.066 3.934 18 C -0.077 4.077 19 H 0.094 0.906 20 C -0.108 4.108 21 C -0.596 4.596 22 S 2.365 3.635 23 O -0.948 6.948 24 O -0.950 6.950 25 C -0.555 4.555 26 H 0.053 0.947 27 H 0.045 0.955 28 H 0.054 0.946 29 H 0.059 0.941 30 H 0.053 0.947 31 H 0.078 0.922 32 H 0.044 0.956 33 H 0.046 0.954 34 H 0.023 0.977 35 H 0.096 0.904 36 H 0.048 0.952 37 H 0.044 0.956 38 H 0.048 0.952 39 H 0.029 0.971 40 H 0.051 0.949 41 H 0.263 0.737 42 H 0.055 0.945 43 H 0.065 0.935 44 H 0.086 0.914 45 H 0.083 0.917 46 H 0.129 0.871 47 H 0.130 0.870 48 H 0.148 0.852 49 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.693 -2.942 12.099 12.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.156 4.156 3 C -0.102 4.102 4 C -0.140 4.140 5 C -0.210 4.210 6 C -0.062 4.062 7 N -0.254 5.254 8 C 0.045 3.955 9 C -0.587 4.587 10 H 0.074 0.926 11 C -0.136 4.136 12 N -0.525 5.525 13 Si 0.710 3.290 14 H -0.208 1.208 15 H -0.211 1.211 16 H -0.200 1.200 17 C -0.064 4.064 18 C -0.097 4.097 19 H 0.112 0.888 20 C -0.147 4.147 21 C -0.725 4.725 22 S 2.552 3.448 23 O -0.945 6.945 24 O -0.947 6.947 25 C -0.686 4.686 26 H 0.072 0.928 27 H 0.064 0.936 28 H 0.073 0.927 29 H 0.078 0.922 30 H 0.072 0.928 31 H 0.096 0.904 32 H 0.063 0.937 33 H 0.065 0.935 34 H 0.042 0.958 35 H 0.114 0.886 36 H 0.067 0.933 37 H 0.063 0.937 38 H 0.066 0.934 39 H 0.047 0.953 40 H 0.069 0.931 41 H 0.073 0.927 42 H 0.073 0.927 43 H 0.083 0.917 44 H 0.105 0.895 45 H 0.102 0.898 46 H 0.148 0.852 47 H 0.148 0.852 48 H 0.166 0.834 49 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 2.376 -1.519 12.059 12.384 hybrid contribution 0.931 -1.872 -1.361 2.494 sum 3.308 -3.391 10.698 11.700 Atomic orbital electron populations 1.21802 0.96446 1.00680 1.01845 1.21516 0.95419 0.97380 1.01244 1.21212 0.95842 0.94590 0.98565 1.21434 0.99015 0.96987 0.96599 1.22033 1.05150 0.94506 0.99303 1.22002 0.94240 0.90665 0.99268 1.62586 1.11685 1.18932 1.32210 1.20170 0.96632 0.96718 0.81968 1.21674 1.30416 1.14006 0.92565 0.92644 1.24913 0.95227 0.94908 0.98518 1.69912 1.39382 1.25617 1.17583 0.86754 0.80228 0.80119 0.81870 1.20788 1.21140 1.20036 1.21931 0.91499 0.92731 1.00226 1.21827 0.94591 0.97525 0.95795 0.88803 1.21944 0.96467 0.92390 1.03925 1.30473 1.15398 1.09804 1.16803 1.09737 0.78350 0.79439 0.77320 1.93580 1.65726 1.62812 1.72417 1.93580 1.70356 1.78562 1.52178 1.30830 1.14825 1.14703 1.08267 0.92773 0.93584 0.92733 0.92239 0.92823 0.90384 0.93689 0.93534 0.95814 0.88578 0.93281 0.93733 0.93371 0.95312 0.93114 0.92723 0.92678 0.91696 0.89538 0.89835 0.85227 0.85158 0.83362 0.83062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.87 9.68 37.16 0.36 -1.51 16 2 C -0.12 -1.61 5.40 -26.73 -0.14 -1.75 16 3 C -0.08 -1.30 2.01 -90.62 -0.18 -1.48 16 4 C -0.10 -1.46 5.27 -26.73 -0.14 -1.60 16 5 C -0.15 -2.33 8.90 37.16 0.33 -2.00 16 6 C 0.07 1.10 4.16 -3.82 -0.02 1.09 16 7 N -0.53 -9.17 1.21 -236.08 -0.29 -9.46 16 8 C 0.17 3.72 4.67 -4.98 -0.02 3.69 16 9 C -0.55 -13.28 7.07 -34.44 -0.24 -13.52 16 10 H 0.06 1.34 6.19 -52.48 -0.32 1.02 16 11 C 0.07 1.75 5.46 -17.82 -0.10 1.65 16 12 N -0.89 -24.31 13.29 55.43 0.74 -23.57 16 13 Si 0.88 20.36 29.54 -169.99 -5.02 15.34 16 14 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 15 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 16 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 17 C 0.07 1.00 4.50 -3.83 -0.02 0.99 16 18 C -0.08 -1.00 2.81 -89.08 -0.25 -1.25 16 19 H 0.09 1.14 7.69 -51.93 -0.40 0.74 16 20 C -0.11 -1.10 5.75 -25.66 -0.15 -1.25 16 21 C -0.60 -5.89 7.26 37.76 0.27 -5.61 16 22 S 2.37 33.32 6.10 -107.50 -0.66 32.66 16 23 O -0.95 -16.18 18.15 -57.73 -1.05 -17.23 16 24 O -0.95 -17.00 18.15 -57.73 -1.05 -18.05 16 25 C -0.55 -8.39 4.87 38.24 0.19 -8.20 16 26 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.05 0.64 6.45 -51.93 -0.33 0.30 16 29 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.08 1.45 6.44 -51.93 -0.33 1.12 16 32 H 0.04 0.61 6.31 -51.93 -0.33 0.28 16 33 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 35 H 0.10 1.50 5.35 -51.93 -0.28 1.22 16 36 H 0.05 0.83 8.11 -51.93 -0.42 0.41 16 37 H 0.04 0.85 6.44 -51.93 -0.33 0.51 16 38 H 0.05 0.72 7.62 -51.93 -0.40 0.32 16 39 H 0.03 0.71 6.44 -51.93 -0.33 0.37 16 40 H 0.05 1.15 4.22 -51.93 -0.22 0.93 16 41 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 42 H 0.05 0.73 7.52 -51.93 -0.39 0.34 16 43 H 0.06 1.14 6.04 -51.93 -0.31 0.83 16 44 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 45 H 0.08 0.82 8.10 -51.93 -0.42 0.40 16 46 H 0.13 1.07 8.14 -51.93 -0.42 0.65 16 47 H 0.13 1.11 8.14 -51.93 -0.42 0.68 16 48 H 0.15 2.49 7.98 -51.93 -0.41 2.07 16 49 H 0.15 2.50 6.31 -51.93 -0.33 2.17 16 LS Contribution 374.34 15.07 5.64 5.64 Total: -1.00 -30.91 374.34 -10.30 -41.21 By element: Atomic # 1 Polarization: 12.72 SS G_CDS: -8.51 Total: 4.21 kcal Atomic # 6 Polarization: -30.64 SS G_CDS: -0.11 Total: -30.75 kcal Atomic # 7 Polarization: -33.48 SS G_CDS: 0.45 Total: -33.03 kcal Atomic # 8 Polarization: -33.18 SS G_CDS: -2.10 Total: -35.28 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -5.02 Total: 15.34 kcal Atomic # 16 Polarization: 33.32 SS G_CDS: -0.66 Total: 32.66 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -30.91 -10.30 -41.21 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000434543122.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.299 kcal (2) G-P(sol) polarization free energy of solvation -30.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.208 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds