Wall clock time and date at job start Tue Mar 31 2020 13:29:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47149 * 2 1 4 4 C 1.53000 * 109.47350 * 239.99677 * 2 1 3 5 5 C 1.52994 * 109.47044 * 119.99396 * 2 1 3 6 6 C 1.53005 * 109.47051 * 70.66767 * 5 2 1 7 7 C 1.53000 * 109.46792 * 79.16358 * 6 5 2 8 8 C 1.52995 * 109.46964 * 319.16257 * 6 5 2 9 9 N 1.46501 * 109.47161 * 199.16027 * 6 5 2 10 10 S 1.65603 * 120.00042 * 200.59088 * 9 6 5 11 11 O 1.42096 * 104.27759 * 321.69608 * 10 9 6 12 12 O 1.42095 * 104.27361 * 193.83447 * 10 9 6 13 13 C 1.81405 * 104.44346 * 77.76506 * 10 9 6 14 14 C 1.53001 * 109.46882 * 182.38931 * 13 10 9 15 15 C 1.50705 * 115.55078 * 296.08609 * 14 13 10 16 16 H 1.08001 * 119.99708 * 95.25452 * 15 14 13 17 17 C 1.37873 * 119.99901 * 274.98615 * 15 14 13 18 18 N 1.31516 * 120.00040 * 355.52264 * 17 15 14 19 19 Si 1.86802 * 120.00163 * 175.51963 * 17 15 14 20 20 H 1.48503 * 109.46668 * 359.97438 * 19 17 15 21 21 H 1.48498 * 109.46782 * 119.99974 * 19 17 15 22 22 H 1.48493 * 109.47016 * 239.99811 * 19 17 15 23 23 C 1.52999 * 117.49735 * 81.75247 * 14 13 10 24 24 C 1.52994 * 117.50127 * 150.41558 * 14 13 10 25 25 H 1.08995 * 109.47377 * 260.65469 * 1 2 3 26 26 H 1.09000 * 109.47335 * 20.65964 * 1 2 3 27 27 H 1.09001 * 109.46736 * 140.65132 * 1 2 3 28 28 H 1.09001 * 109.47654 * 180.02562 * 3 2 1 29 29 H 1.09008 * 109.46882 * 299.99507 * 3 2 1 30 30 H 1.09006 * 109.47350 * 59.99251 * 3 2 1 31 31 H 1.08999 * 109.47251 * 304.60416 * 4 2 1 32 32 H 1.09005 * 109.46792 * 64.60587 * 4 2 1 33 33 H 1.09002 * 109.46958 * 184.60073 * 4 2 1 34 34 H 1.09003 * 109.47422 * 310.67114 * 5 2 1 35 35 H 1.09001 * 109.47516 * 190.66703 * 5 2 1 36 36 H 1.09003 * 109.46726 * 187.54061 * 7 6 5 37 37 H 1.08997 * 109.47448 * 307.54232 * 7 6 5 38 38 H 1.09002 * 109.47120 * 67.54860 * 7 6 5 39 39 H 1.08997 * 109.47662 * 307.10113 * 8 6 5 40 40 H 1.09005 * 109.46801 * 67.10547 * 8 6 5 41 41 H 1.08999 * 109.47051 * 187.10032 * 8 6 5 42 42 H 0.97007 * 119.99712 * 20.60107 * 9 6 5 43 43 H 1.08992 * 109.47307 * 62.39006 * 13 10 9 44 44 H 1.09000 * 109.46837 * 302.38773 * 13 10 9 45 45 H 0.96996 * 119.99916 * 185.00672 * 18 17 15 46 46 H 1.09006 * 117.49829 * 215.00141 * 23 14 13 47 47 H 1.08997 * 117.50315 * 0.02562 * 23 14 13 48 48 H 1.09006 * 117.49652 * 359.97419 * 24 14 13 49 49 H 1.09000 * 117.50161 * 144.97498 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0399 -0.7211 1.2493 6 6 1.7597 -2.2200 1.1231 7 6 2.8133 -2.8613 0.2178 8 6 0.3706 -2.4298 0.5171 9 7 1.8127 -2.8400 2.4493 10 16 2.0578 -4.4716 2.5914 11 8 1.3135 -5.0325 1.5187 12 8 1.7259 -4.7594 3.9427 13 6 3.8372 -4.6878 2.3130 14 6 4.1835 -6.1774 2.3604 15 6 3.9548 -6.8560 3.6864 16 1 3.0306 -7.3836 3.8706 17 6 4.9276 -6.8080 4.6623 18 7 6.0889 -6.2466 4.4060 19 14 4.5960 -7.5402 6.3485 20 1 3.2237 -8.1068 6.3809 21 1 5.5826 -8.6153 6.6240 22 1 4.7178 -6.4801 7.3811 23 6 3.9383 -7.0003 1.0941 24 6 5.3681 -6.6545 1.5178 25 1 -0.3634 -0.1669 1.0140 26 1 -0.3634 0.9616 -0.3626 27 1 -0.3633 -0.7947 -0.6516 28 1 3.1300 1.4426 -0.0005 29 1 1.6767 1.9563 -0.8901 30 1 1.6766 1.9564 0.8900 31 1 1.6110 -1.7224 -1.2914 32 1 1.7456 -0.1620 -2.1373 33 1 3.1269 -0.7932 -1.2089 34 1 1.5296 -0.3289 2.1290 35 1 3.1132 -0.5594 1.3496 36 1 2.5396 -3.8975 0.0194 37 1 2.8666 -2.3130 -0.7227 38 1 3.7844 -2.8303 0.7120 39 1 -0.3653 -1.8676 1.0919 40 1 0.3684 -2.0812 -0.5157 41 1 0.1192 -3.4900 0.5432 42 1 1.7041 -2.2948 3.2443 43 1 4.3930 -4.1608 3.0884 44 1 4.1039 -4.2837 1.3364 45 1 6.7985 -6.2768 5.0667 46 1 3.6116 -8.0326 1.2201 47 1 3.5307 -6.4805 0.2271 48 1 5.9004 -5.9072 0.9292 49 1 5.9822 -7.4589 1.9226 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000450973013.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:29:10 Heat of formation + Delta-G solvation = -24.519081 kcal Electronic energy + Delta-G solvation = -27306.506838 eV Core-core repulsion = 23783.967842 eV Total energy + Delta-G solvation = -3522.538996 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.181 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.10822 -36.74305 -36.28346 -35.24307 -34.92815 -32.00088 -30.46692 -29.29439 -28.19391 -27.91222 -26.49849 -25.81973 -25.21667 -21.16104 -20.56353 -19.38905 -19.17856 -18.39543 -16.83328 -16.40781 -16.13613 -15.19646 -15.03517 -14.88244 -14.63075 -14.57866 -14.16178 -13.91405 -13.72581 -13.40772 -13.12493 -12.90052 -12.28258 -12.10817 -11.95130 -11.85423 -11.79443 -11.67526 -11.51732 -11.21882 -11.12061 -11.09364 -11.00117 -10.94549 -10.91532 -10.74560 -10.58907 -10.46239 -10.42850 -10.36738 -10.03123 -9.75817 -9.58976 -9.11051 -8.98466 -8.50945 -8.03983 -6.09708 -4.21209 1.17104 3.30650 3.38958 3.48134 3.49694 4.40675 4.52428 4.60429 4.63869 4.70939 4.90386 4.97800 5.07108 5.17007 5.18802 5.25579 5.38735 5.41983 5.44021 5.48161 5.54892 5.61348 5.69797 5.72794 5.75763 5.81320 5.82810 5.92917 6.00197 6.05848 6.07841 6.15743 6.20424 6.25276 6.30124 6.34584 6.39547 6.53980 6.66612 6.69174 6.75707 7.03633 7.26789 7.41125 7.48506 7.83748 8.24031 8.84790 9.50010 10.96948 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.022192 B = 0.004125 C = 0.004004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1261.388137 B = 6785.768411 C = 6991.290576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.064 4.064 3 C -0.140 4.140 4 C -0.168 4.168 5 C -0.109 4.109 6 C 0.191 3.809 7 C -0.241 4.241 8 C -0.197 4.197 9 N -1.126 6.126 10 S 2.611 3.389 11 O -0.971 6.971 12 O -0.956 6.956 13 C -0.568 4.568 14 C 0.039 3.961 15 C -0.511 4.511 16 H 0.068 0.932 17 C 0.079 3.921 18 N -0.876 5.876 19 Si 0.891 3.109 20 H -0.267 1.267 21 H -0.284 1.284 22 H -0.280 1.280 23 C -0.210 4.210 24 C -0.134 4.134 25 H 0.062 0.938 26 H 0.045 0.955 27 H 0.071 0.929 28 H 0.054 0.946 29 H 0.054 0.946 30 H 0.053 0.947 31 H 0.084 0.916 32 H 0.052 0.948 33 H 0.063 0.937 34 H 0.068 0.932 35 H 0.070 0.930 36 H 0.080 0.920 37 H 0.110 0.890 38 H 0.072 0.928 39 H 0.063 0.937 40 H 0.083 0.917 41 H 0.079 0.921 42 H 0.408 0.592 43 H 0.126 0.874 44 H 0.110 0.890 45 H 0.261 0.739 46 H 0.085 0.915 47 H 0.073 0.927 48 H 0.064 0.936 49 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.388 14.366 -10.305 18.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.064 4.064 3 C -0.197 4.197 4 C -0.225 4.225 5 C -0.148 4.148 6 C 0.102 3.898 7 C -0.298 4.298 8 C -0.255 4.255 9 N -0.882 5.882 10 S 2.708 3.292 11 O -0.961 6.961 12 O -0.946 6.946 13 C -0.700 4.700 14 C 0.037 3.963 15 C -0.548 4.548 16 H 0.086 0.914 17 C -0.125 4.125 18 N -0.512 5.512 19 Si 0.718 3.282 20 H -0.191 1.191 21 H -0.210 1.210 22 H -0.206 1.206 23 C -0.247 4.247 24 C -0.173 4.173 25 H 0.081 0.919 26 H 0.064 0.936 27 H 0.090 0.910 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.103 0.897 32 H 0.071 0.929 33 H 0.082 0.918 34 H 0.087 0.913 35 H 0.088 0.912 36 H 0.099 0.901 37 H 0.128 0.872 38 H 0.091 0.909 39 H 0.082 0.918 40 H 0.101 0.899 41 H 0.098 0.902 42 H 0.241 0.759 43 H 0.145 0.855 44 H 0.128 0.872 45 H 0.071 0.929 46 H 0.103 0.897 47 H 0.092 0.908 48 H 0.082 0.918 49 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -6.921 13.732 -10.154 18.428 hybrid contribution 0.767 0.271 1.306 1.539 sum -6.154 14.003 -8.848 17.670 Atomic orbital electron populations 1.22623 0.94568 1.01543 1.02569 1.20454 0.95794 0.95083 0.95094 1.21920 1.00972 0.95305 1.01535 1.22681 1.01394 1.01516 0.96864 1.22035 1.01735 0.93514 0.97555 1.19857 0.95474 0.92599 0.81833 1.23719 0.98980 1.03996 1.03128 1.23382 0.96290 1.04504 1.01321 1.56194 1.90259 1.29190 1.12524 1.05011 0.78465 0.71713 0.74005 1.93452 1.69051 1.76621 1.57024 1.93539 1.83307 1.81871 1.35884 1.30412 1.22829 1.07449 1.09311 1.18296 1.00823 0.85919 0.91248 1.20589 1.03684 1.34786 0.95766 0.91398 1.24954 0.94885 0.94151 0.98539 1.70015 1.03110 1.42876 1.35164 0.86527 0.78817 0.78846 0.83996 1.19100 1.20975 1.20601 1.23191 1.01398 1.01188 0.98933 1.22496 0.89951 1.02580 1.02322 0.91948 0.93586 0.90984 0.92694 0.92727 0.92746 0.89742 0.92941 0.91834 0.91293 0.91175 0.90134 0.87157 0.90907 0.91817 0.89915 0.90213 0.75927 0.85538 0.87163 0.92901 0.89669 0.90812 0.91781 0.89323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.29 7.43 37.16 0.28 -1.01 16 2 C -0.06 -0.54 0.77 -154.51 -0.12 -0.66 16 3 C -0.14 -1.06 8.21 37.16 0.31 -0.75 16 4 C -0.17 -1.38 6.33 37.16 0.24 -1.14 16 5 C -0.11 -1.10 3.98 -26.73 -0.11 -1.21 16 6 C 0.19 2.41 0.81 -131.82 -0.11 2.31 16 7 C -0.24 -3.07 6.12 37.16 0.23 -2.85 16 8 C -0.20 -2.44 6.69 37.16 0.25 -2.19 16 9 N -1.13 -17.06 5.38 0.54 0.00 -17.06 16 10 S 2.61 53.14 4.74 -107.50 -0.51 52.63 16 11 O -0.97 -20.63 14.04 -57.54 -0.81 -21.44 16 12 O -0.96 -23.41 17.50 -57.54 -1.01 -24.41 16 13 C -0.57 -11.92 5.38 37.16 0.20 -11.72 16 14 C 0.04 0.97 1.43 -155.66 -0.22 0.74 16 15 C -0.51 -14.21 7.94 -34.44 -0.27 -14.48 16 16 H 0.07 1.94 7.82 -52.49 -0.41 1.53 16 17 C 0.08 2.20 5.43 -17.82 -0.10 2.10 16 18 N -0.88 -24.39 12.65 55.43 0.70 -23.69 16 19 Si 0.89 21.88 29.54 -169.99 -5.02 16.85 16 20 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 21 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 22 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 23 C -0.21 -4.62 9.96 -26.69 -0.27 -4.89 16 24 C -0.13 -3.09 9.15 -26.69 -0.24 -3.34 16 25 H 0.06 0.54 6.06 -51.93 -0.31 0.22 16 26 H 0.05 0.34 7.71 -51.93 -0.40 -0.06 16 27 H 0.07 0.58 5.24 -51.93 -0.27 0.31 16 28 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.05 0.38 8.13 -51.92 -0.42 -0.05 16 30 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.08 0.74 3.58 -51.93 -0.19 0.55 16 32 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.06 0.51 7.06 -51.93 -0.37 0.14 16 34 H 0.07 0.66 7.66 -51.93 -0.40 0.27 16 35 H 0.07 0.69 7.96 -51.93 -0.41 0.28 16 36 H 0.08 1.18 5.97 -51.93 -0.31 0.87 16 37 H 0.11 1.11 3.22 -51.93 -0.17 0.94 16 38 H 0.07 0.92 6.03 -51.93 -0.31 0.61 16 39 H 0.06 0.72 5.85 -51.93 -0.30 0.41 16 40 H 0.08 0.83 3.05 -51.93 -0.16 0.68 16 41 H 0.08 1.21 6.07 -51.93 -0.31 0.90 16 42 H 0.41 5.44 8.54 -34.48 -0.29 5.15 16 43 H 0.13 2.77 8.14 -51.93 -0.42 2.35 16 44 H 0.11 1.96 4.61 -51.92 -0.24 1.72 16 45 H 0.26 6.92 8.32 -40.82 -0.34 6.58 16 46 H 0.08 1.87 8.14 -51.93 -0.42 1.44 16 47 H 0.07 1.46 8.14 -51.93 -0.42 1.04 16 48 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 49 H 0.09 2.18 8.14 -51.93 -0.42 1.76 16 LS Contribution 362.81 15.07 5.47 5.47 Total: -1.00 -32.30 362.81 -8.92 -41.22 By element: Atomic # 1 Polarization: 17.33 SS G_CDS: -7.80 Total: 9.52 kcal Atomic # 6 Polarization: -39.15 SS G_CDS: 0.06 Total: -39.09 kcal Atomic # 7 Polarization: -41.46 SS G_CDS: 0.70 Total: -40.75 kcal Atomic # 8 Polarization: -44.04 SS G_CDS: -1.82 Total: -45.85 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.85 kcal Atomic # 16 Polarization: 53.14 SS G_CDS: -0.51 Total: 52.63 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -32.30 -8.92 -41.22 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000450973013.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.704 kcal (2) G-P(sol) polarization free energy of solvation -32.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.223 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds