Wall clock time and date at job start Tue Mar 31 2020 13:29:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47149 * 2 1 4 4 C 1.53000 * 109.47350 * 239.99677 * 2 1 3 5 5 C 1.52994 * 109.47044 * 119.99396 * 2 1 3 6 6 C 1.53005 * 109.47051 * 70.66767 * 5 2 1 7 7 C 1.53000 * 109.46792 * 79.16358 * 6 5 2 8 8 C 1.52995 * 109.46964 * 319.16257 * 6 5 2 9 9 N 1.46501 * 109.47161 * 199.16027 * 6 5 2 10 10 S 1.65603 * 120.00042 * 200.59088 * 9 6 5 11 11 O 1.42096 * 104.27759 * 321.69608 * 10 9 6 12 12 O 1.42095 * 104.27361 * 193.83447 * 10 9 6 13 13 C 1.81405 * 104.44346 * 77.76506 * 10 9 6 14 14 C 1.53001 * 109.46882 * 182.38931 * 13 10 9 15 15 C 1.50705 * 115.55078 * 296.08609 * 14 13 10 16 16 H 1.08001 * 119.99708 * 95.25452 * 15 14 13 17 17 C 1.37873 * 119.99901 * 274.98615 * 15 14 13 18 18 N 1.31516 * 120.00040 * 355.52264 * 17 15 14 19 19 Si 1.86802 * 120.00163 * 175.51963 * 17 15 14 20 20 H 1.48503 * 109.46668 * 359.97438 * 19 17 15 21 21 H 1.48498 * 109.46782 * 119.99974 * 19 17 15 22 22 H 1.48493 * 109.47016 * 239.99811 * 19 17 15 23 23 C 1.52999 * 117.49735 * 81.75247 * 14 13 10 24 24 C 1.52994 * 117.50127 * 150.41558 * 14 13 10 25 25 H 1.08995 * 109.47377 * 260.65469 * 1 2 3 26 26 H 1.09000 * 109.47335 * 20.65964 * 1 2 3 27 27 H 1.09001 * 109.46736 * 140.65132 * 1 2 3 28 28 H 1.09001 * 109.47654 * 180.02562 * 3 2 1 29 29 H 1.09008 * 109.46882 * 299.99507 * 3 2 1 30 30 H 1.09006 * 109.47350 * 59.99251 * 3 2 1 31 31 H 1.08999 * 109.47251 * 304.60416 * 4 2 1 32 32 H 1.09005 * 109.46792 * 64.60587 * 4 2 1 33 33 H 1.09002 * 109.46958 * 184.60073 * 4 2 1 34 34 H 1.09003 * 109.47422 * 310.67114 * 5 2 1 35 35 H 1.09001 * 109.47516 * 190.66703 * 5 2 1 36 36 H 1.09003 * 109.46726 * 187.54061 * 7 6 5 37 37 H 1.08997 * 109.47448 * 307.54232 * 7 6 5 38 38 H 1.09002 * 109.47120 * 67.54860 * 7 6 5 39 39 H 1.08997 * 109.47662 * 307.10113 * 8 6 5 40 40 H 1.09005 * 109.46801 * 67.10547 * 8 6 5 41 41 H 1.08999 * 109.47051 * 187.10032 * 8 6 5 42 42 H 0.97007 * 119.99712 * 20.60107 * 9 6 5 43 43 H 1.08992 * 109.47307 * 62.39006 * 13 10 9 44 44 H 1.09000 * 109.46837 * 302.38773 * 13 10 9 45 45 H 0.96996 * 119.99916 * 185.00672 * 18 17 15 46 46 H 1.09006 * 117.49829 * 215.00141 * 23 14 13 47 47 H 1.08997 * 117.50315 * 0.02562 * 23 14 13 48 48 H 1.09006 * 117.49652 * 359.97419 * 24 14 13 49 49 H 1.09000 * 117.50161 * 144.97498 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0399 -0.7211 1.2493 6 6 1.7597 -2.2200 1.1231 7 6 2.8133 -2.8613 0.2178 8 6 0.3706 -2.4298 0.5171 9 7 1.8127 -2.8400 2.4493 10 16 2.0578 -4.4716 2.5914 11 8 1.3135 -5.0325 1.5187 12 8 1.7259 -4.7594 3.9427 13 6 3.8372 -4.6878 2.3130 14 6 4.1835 -6.1774 2.3604 15 6 3.9548 -6.8560 3.6864 16 1 3.0306 -7.3836 3.8706 17 6 4.9276 -6.8080 4.6623 18 7 6.0889 -6.2466 4.4060 19 14 4.5960 -7.5402 6.3485 20 1 3.2237 -8.1068 6.3809 21 1 5.5826 -8.6153 6.6240 22 1 4.7178 -6.4801 7.3811 23 6 3.9383 -7.0003 1.0941 24 6 5.3681 -6.6545 1.5178 25 1 -0.3634 -0.1669 1.0140 26 1 -0.3634 0.9616 -0.3626 27 1 -0.3633 -0.7947 -0.6516 28 1 3.1300 1.4426 -0.0005 29 1 1.6767 1.9563 -0.8901 30 1 1.6766 1.9564 0.8900 31 1 1.6110 -1.7224 -1.2914 32 1 1.7456 -0.1620 -2.1373 33 1 3.1269 -0.7932 -1.2089 34 1 1.5296 -0.3289 2.1290 35 1 3.1132 -0.5594 1.3496 36 1 2.5396 -3.8975 0.0194 37 1 2.8666 -2.3130 -0.7227 38 1 3.7844 -2.8303 0.7120 39 1 -0.3653 -1.8676 1.0919 40 1 0.3684 -2.0812 -0.5157 41 1 0.1192 -3.4900 0.5432 42 1 1.7041 -2.2948 3.2443 43 1 4.3930 -4.1608 3.0884 44 1 4.1039 -4.2837 1.3364 45 1 6.7985 -6.2768 5.0667 46 1 3.6116 -8.0326 1.2201 47 1 3.5307 -6.4805 0.2271 48 1 5.9004 -5.9072 0.9292 49 1 5.9822 -7.4589 1.9226 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000450973013.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:29:09 Heat of formation + Delta-G solvation = -45.566242 kcal Electronic energy + Delta-G solvation = -27307.419512 eV Core-core repulsion = 23783.967842 eV Total energy + Delta-G solvation = -3523.451669 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.181 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.96269 -38.57588 -37.93524 -36.77765 -36.13158 -34.08626 -31.53674 -30.41237 -29.47591 -28.74313 -27.60463 -27.15054 -26.43128 -22.96698 -21.82690 -21.06586 -20.18825 -19.68910 -18.36655 -18.17563 -17.39507 -16.80681 -16.63579 -16.12810 -15.94987 -15.61671 -15.39842 -15.16262 -14.98657 -14.66465 -14.25966 -13.89156 -13.70056 -13.64831 -13.18589 -13.13977 -13.03075 -12.91805 -12.87641 -12.77433 -12.56280 -12.51568 -12.44914 -12.28558 -12.24219 -12.01296 -11.98425 -11.75533 -11.54452 -11.45961 -11.27435 -11.22409 -10.94601 -10.57306 -10.52970 -10.38429 -9.84167 -8.19597 -6.35107 -0.43744 1.33574 1.38185 1.50088 2.07644 2.38187 3.02521 3.06946 3.36855 3.47246 3.73199 3.87201 3.92959 4.00603 4.12044 4.17424 4.20904 4.33457 4.51887 4.53686 4.62276 4.69394 4.72126 4.77278 4.83087 4.84629 4.90591 4.97538 4.98966 5.00247 5.08230 5.13019 5.17194 5.22571 5.23121 5.28465 5.33891 5.45888 5.48568 5.54706 5.56342 5.62191 5.63605 5.71213 5.76691 6.22056 6.25815 6.71463 7.37116 8.86607 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.022192 B = 0.004125 C = 0.004004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1261.388137 B = 6785.768411 C = 6991.290576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.061 4.061 3 C -0.138 4.138 4 C -0.173 4.173 5 C -0.106 4.106 6 C 0.183 3.817 7 C -0.250 4.250 8 C -0.199 4.199 9 N -1.113 6.113 10 S 2.624 3.376 11 O -0.983 6.983 12 O -1.005 7.005 13 C -0.564 4.564 14 C 0.006 3.994 15 C -0.530 4.530 16 H 0.045 0.955 17 C 0.041 3.959 18 N -0.893 5.893 19 Si 0.933 3.067 20 H -0.276 1.276 21 H -0.269 1.269 22 H -0.275 1.275 23 C -0.196 4.196 24 C -0.131 4.131 25 H 0.056 0.944 26 H 0.056 0.944 27 H 0.072 0.928 28 H 0.055 0.945 29 H 0.063 0.937 30 H 0.054 0.946 31 H 0.078 0.922 32 H 0.065 0.935 33 H 0.068 0.932 34 H 0.073 0.927 35 H 0.074 0.926 36 H 0.060 0.940 37 H 0.140 0.860 38 H 0.072 0.928 39 H 0.072 0.928 40 H 0.108 0.892 41 H 0.048 0.952 42 H 0.418 0.582 43 H 0.114 0.886 44 H 0.143 0.857 45 H 0.265 0.735 46 H 0.079 0.921 47 H 0.100 0.900 48 H 0.086 0.914 49 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.379 16.398 -11.738 21.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.062 4.062 3 C -0.196 4.196 4 C -0.229 4.229 5 C -0.145 4.145 6 C 0.096 3.904 7 C -0.307 4.307 8 C -0.256 4.256 9 N -0.872 5.872 10 S 2.722 3.278 11 O -0.973 6.973 12 O -0.995 6.995 13 C -0.696 4.696 14 C 0.004 3.996 15 C -0.568 4.568 16 H 0.063 0.937 17 C -0.162 4.162 18 N -0.529 5.529 19 Si 0.758 3.242 20 H -0.200 1.200 21 H -0.194 1.194 22 H -0.201 1.201 23 C -0.233 4.233 24 C -0.170 4.170 25 H 0.075 0.925 26 H 0.075 0.925 27 H 0.090 0.910 28 H 0.074 0.926 29 H 0.082 0.918 30 H 0.073 0.927 31 H 0.096 0.904 32 H 0.084 0.916 33 H 0.086 0.914 34 H 0.092 0.908 35 H 0.093 0.907 36 H 0.079 0.921 37 H 0.158 0.842 38 H 0.091 0.909 39 H 0.091 0.909 40 H 0.126 0.874 41 H 0.067 0.933 42 H 0.252 0.748 43 H 0.133 0.867 44 H 0.161 0.839 45 H 0.074 0.926 46 H 0.098 0.902 47 H 0.118 0.882 48 H 0.105 0.895 49 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -6.905 15.753 -11.584 20.737 hybrid contribution 0.717 -0.309 1.679 1.851 sum -6.189 15.443 -9.905 19.362 Atomic orbital electron populations 1.22625 0.94409 1.02188 1.02304 1.20444 0.95898 0.95530 0.94279 1.21900 1.01068 0.94528 1.02058 1.22686 1.01681 1.01248 0.97267 1.22046 1.02277 0.91376 0.98847 1.20182 0.95828 0.94162 0.80217 1.23850 0.98745 1.03336 1.04724 1.23461 0.96309 1.02657 1.03214 1.55822 1.89676 1.27351 1.14372 1.04318 0.78003 0.72885 0.72638 1.93437 1.69113 1.77856 1.56897 1.93469 1.83960 1.83564 1.38489 1.30346 1.23294 1.05175 1.10782 1.18427 1.02620 0.87810 0.90720 1.20753 1.02883 1.35220 0.97910 0.93660 1.25500 0.94933 0.94776 1.00973 1.70052 1.03400 1.43484 1.35969 0.85886 0.78446 0.78765 0.81093 1.20027 1.19368 1.20089 1.23234 1.00596 1.00878 0.98630 1.22431 0.90002 1.02382 1.02176 0.92494 0.92541 0.90959 0.92563 0.91823 0.92669 0.90381 0.91597 0.91371 0.90790 0.90691 0.92067 0.84216 0.90890 0.90874 0.87410 0.93288 0.74754 0.86740 0.83941 0.92600 0.90206 0.88163 0.89518 0.91568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.16 7.43 71.98 0.54 -1.63 16 2 C -0.06 -0.84 0.77 -52.18 -0.04 -0.88 16 3 C -0.14 -1.65 8.21 71.98 0.59 -1.05 16 4 C -0.17 -2.24 6.33 71.98 0.46 -1.79 16 5 C -0.11 -1.87 3.98 30.59 0.12 -1.74 16 6 C 0.18 4.30 0.81 3.60 0.00 4.30 16 7 C -0.25 -5.82 6.12 71.98 0.44 -5.38 16 8 C -0.20 -4.60 6.69 71.98 0.48 -4.12 16 9 N -1.11 -32.78 5.38 -152.21 -0.82 -33.60 16 10 S 2.62 107.31 4.74 -56.49 -0.27 107.04 16 11 O -0.98 -41.82 14.04 -127.65 -1.79 -43.61 16 12 O -1.00 -50.49 17.50 -127.65 -2.23 -52.72 16 13 C -0.56 -23.49 5.38 71.98 0.39 -23.10 16 14 C 0.01 0.31 1.43 -52.93 -0.08 0.23 16 15 C -0.53 -30.15 7.94 25.60 0.20 -29.94 16 16 H 0.05 2.70 7.82 -2.91 -0.02 2.68 16 17 C 0.04 2.28 5.43 84.65 0.46 2.74 16 18 N -0.89 -49.99 12.65 21.45 0.27 -49.72 16 19 Si 0.93 45.24 29.54 68.60 2.03 47.26 16 20 H -0.28 -13.62 7.11 99.48 0.71 -12.91 16 21 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 22 H -0.28 -13.05 7.11 99.48 0.71 -12.35 16 23 C -0.20 -8.51 9.96 30.62 0.30 -8.21 16 24 C -0.13 -5.95 9.15 30.62 0.28 -5.67 16 25 H 0.06 0.84 6.06 -2.39 -0.01 0.83 16 26 H 0.06 0.66 7.71 -2.39 -0.02 0.64 16 27 H 0.07 0.97 5.24 -2.39 -0.01 0.96 16 28 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 29 H 0.06 0.66 8.13 -2.38 -0.02 0.64 16 30 H 0.05 0.65 8.14 -2.38 -0.02 0.63 16 31 H 0.08 1.11 3.58 -2.39 -0.01 1.10 16 32 H 0.07 0.71 8.14 -2.38 -0.02 0.69 16 33 H 0.07 0.84 7.06 -2.39 -0.02 0.82 16 34 H 0.07 1.24 7.66 -2.39 -0.02 1.22 16 35 H 0.07 1.27 7.96 -2.39 -0.02 1.25 16 36 H 0.06 1.69 5.97 -2.39 -0.01 1.67 16 37 H 0.14 2.38 3.22 -2.39 -0.01 2.38 16 38 H 0.07 1.68 6.03 -2.39 -0.01 1.67 16 39 H 0.07 1.53 5.85 -2.39 -0.01 1.51 16 40 H 0.11 1.92 3.05 -2.38 -0.01 1.92 16 41 H 0.05 1.46 6.07 -2.39 -0.01 1.44 16 42 H 0.42 10.79 8.54 -96.73 -0.83 9.96 16 43 H 0.11 5.03 8.14 -2.39 -0.02 5.01 16 44 H 0.14 4.84 4.61 -2.39 -0.01 4.83 16 45 H 0.26 14.03 8.32 -92.71 -0.77 13.26 16 46 H 0.08 3.50 8.14 -2.38 -0.02 3.48 16 47 H 0.10 3.78 8.14 -2.39 -0.02 3.76 16 48 H 0.09 3.49 8.14 -2.38 -0.02 3.47 16 49 H 0.07 3.28 8.14 -2.39 -0.02 3.26 16 Total: -1.00 -70.14 362.81 1.47 -68.68 By element: Atomic # 1 Polarization: 32.77 SS G_CDS: 0.13 Total: 32.90 kcal Atomic # 6 Polarization: -80.38 SS G_CDS: 4.15 Total: -76.23 kcal Atomic # 7 Polarization: -82.77 SS G_CDS: -0.55 Total: -83.32 kcal Atomic # 8 Polarization: -92.30 SS G_CDS: -4.03 Total: -96.33 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 2.03 Total: 47.26 kcal Atomic # 16 Polarization: 107.31 SS G_CDS: -0.27 Total: 107.04 kcal Total: -70.14 1.47 -68.68 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000450973013.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.110 kcal (2) G-P(sol) polarization free energy of solvation -70.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.676 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds