Wall clock time and date at job start Tue Mar 31 2020 12:20:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.53006 * 109.45960 * 59.99880 * 3 2 1 5 5 C 1.53037 * 109.46046 * 300.02849 * 3 2 1 6 6 C 1.53201 * 109.31127 * 178.59697 * 5 3 2 7 7 N 1.46921 * 108.76377 * 54.66142 * 6 5 3 8 8 S 1.65593 * 120.63350 * 126.36227 * 7 6 5 9 9 O 1.42099 * 104.27819 * 26.08763 * 8 7 6 10 10 O 1.42100 * 104.28111 * 153.94836 * 8 7 6 11 11 C 1.81398 * 104.45007 * 270.01717 * 8 7 6 12 12 C 1.53000 * 109.47587 * 179.97438 * 11 8 7 13 13 C 1.53001 * 109.47075 * 300.00299 * 12 11 8 14 14 C 1.53005 * 109.46915 * 59.99944 * 12 11 8 15 15 C 1.50700 * 109.47386 * 179.97438 * 12 11 8 16 16 H 1.08003 * 120.00052 * 0.02562 * 15 12 11 17 17 C 1.37877 * 119.99922 * 179.97438 * 15 12 11 18 18 N 1.31509 * 120.00191 * 0.02562 * 17 15 12 19 19 Si 1.86799 * 119.99806 * 180.02562 * 17 15 12 20 20 H 1.48500 * 109.47097 * 90.00347 * 19 17 15 21 21 H 1.48499 * 109.47358 * 210.00124 * 19 17 15 22 22 H 1.48500 * 109.47452 * 330.00399 * 19 17 15 23 23 C 1.46932 * 118.73592 * 306.37486 * 7 6 5 24 24 C 1.53043 * 109.46339 * 179.97438 * 3 2 1 25 25 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 26 26 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 27 27 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 29 29 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 30 30 H 1.09002 * 109.46887 * 60.00551 * 4 3 2 31 31 H 1.08998 * 109.46950 * 180.02562 * 4 3 2 32 32 H 1.08996 * 109.47354 * 300.00196 * 4 3 2 33 33 H 1.08996 * 109.49850 * 298.55996 * 5 3 2 34 34 H 1.08997 * 109.49675 * 58.66461 * 5 3 2 35 35 H 1.08997 * 109.59941 * 294.86415 * 6 5 3 36 36 H 1.09004 * 109.58094 * 174.43573 * 6 5 3 37 37 H 1.09005 * 109.47168 * 299.99980 * 11 8 7 38 38 H 1.08999 * 109.47097 * 59.99888 * 11 8 7 39 39 H 1.08993 * 109.47241 * 59.99304 * 13 12 11 40 40 H 1.09002 * 109.46994 * 180.02562 * 13 12 11 41 41 H 1.08999 * 109.46896 * 299.99584 * 13 12 11 42 42 H 1.09005 * 109.47099 * 60.00383 * 14 12 11 43 43 H 1.08998 * 109.46884 * 180.02562 * 14 12 11 44 44 H 1.08996 * 109.47339 * 300.00120 * 14 12 11 45 45 H 0.96998 * 120.00351 * 179.97438 * 18 17 15 46 46 H 1.09000 * 109.58765 * 293.82873 * 23 7 6 47 47 H 1.09006 * 109.70332 * 173.46858 * 23 7 6 48 48 H 1.08999 * 109.50071 * 301.33691 * 24 3 2 49 49 H 1.08998 * 109.49573 * 61.40479 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 1.5299 2.1634 1.2494 5 6 1.5292 2.1638 -1.2493 6 6 2.0128 3.6174 -1.2282 7 7 3.4746 3.6270 -1.0816 8 16 4.4249 4.4556 -2.1552 9 8 3.5779 5.4823 -2.6530 10 8 5.5981 4.7676 -1.4167 11 6 4.7949 3.2483 -3.4575 12 6 5.6774 3.9017 -4.5230 13 6 4.9422 5.0981 -5.1305 14 6 6.9830 4.3771 -3.8824 15 6 5.9852 2.8985 -5.6046 16 1 5.5906 1.8954 -5.5389 17 6 6.7699 3.2617 -6.6786 18 7 7.2500 4.4834 -6.7589 19 14 7.1509 2.0184 -8.0197 20 1 6.1081 2.0927 -9.0743 21 1 8.4778 2.3218 -8.6135 22 1 7.1697 0.6524 -7.4375 23 6 4.0774 2.8873 0.0357 24 6 3.5705 1.4421 0.0006 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8933 -0.5139 0.8900 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 1.6495 2.1393 31 1 1.8928 3.1912 1.2493 32 1 0.4399 2.1634 1.2493 33 1 1.9128 1.6655 -2.1395 34 1 0.4395 2.1433 -1.2612 35 1 1.5577 4.1420 -0.3882 36 1 1.7359 4.1080 -2.1614 37 1 5.3182 2.3958 -3.0246 38 1 3.8648 2.9100 -3.9142 39 1 4.7199 5.8235 -4.3480 40 1 5.5708 5.5633 -5.8899 41 1 4.0121 4.7595 -5.5869 42 1 7.5067 3.5247 -3.4496 43 1 7.6115 4.8430 -4.6413 44 1 6.7607 5.1025 -3.0999 45 1 7.8024 4.7388 -7.5142 46 1 3.7906 3.3524 0.9789 47 1 5.1631 2.8961 -0.0609 48 1 3.9339 0.9078 0.8785 49 1 3.9345 0.9501 -0.9013 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451145126.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:20:25 Heat of formation + Delta-G solvation = -91.143214 kcal Electronic energy + Delta-G solvation = -27184.126570 eV Core-core repulsion = 23658.698535 eV Total energy + Delta-G solvation = -3525.428035 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.181 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -39.73245 -36.58313 -36.25818 -35.37247 -34.99712 -31.65448 -31.28909 -30.38347 -27.56597 -26.65216 -25.70700 -25.22394 -24.93948 -23.36872 -21.66276 -19.54370 -18.97720 -17.93844 -17.22812 -15.99222 -15.81367 -15.46157 -15.20966 -14.98510 -14.70157 -14.51113 -14.30911 -14.14497 -13.44266 -13.19744 -12.98945 -12.70807 -12.49541 -12.30594 -12.23910 -12.08756 -11.94028 -11.89079 -11.48577 -11.37778 -11.24111 -11.12505 -11.05621 -10.95349 -10.82867 -10.70590 -10.68377 -10.38130 -10.29295 -10.28513 -10.22760 -10.07574 -9.64279 -9.53292 -8.84429 -8.56519 -8.39682 -6.02764 -4.14697 0.87475 3.13438 3.25746 3.33069 3.35049 4.34265 4.41910 4.48963 4.57127 4.58936 4.71794 4.88649 5.10899 5.13791 5.20669 5.22491 5.31349 5.37774 5.39441 5.49600 5.51977 5.65762 5.67914 5.68962 5.77077 5.79505 5.82501 5.87905 5.92591 5.97120 6.03028 6.09831 6.23139 6.30215 6.38343 6.43412 6.71856 6.76941 6.81014 6.92050 7.05614 7.32319 7.51341 7.68315 7.98730 8.10497 8.33955 8.83737 9.50632 10.98541 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.017764 B = 0.004220 C = 0.003755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1575.862218 B = 6633.988888 C = 7454.016237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.113 4.113 3 C -0.058 4.058 4 C -0.149 4.149 5 C -0.129 4.129 6 C 0.120 3.880 7 N -1.007 6.007 8 S 2.593 3.407 9 O -0.963 6.963 10 O -0.963 6.963 11 C -0.581 4.581 12 C 0.081 3.919 13 C -0.163 4.163 14 C -0.163 4.163 15 C -0.501 4.501 16 H 0.058 0.942 17 C 0.064 3.936 18 N -0.884 5.884 19 Si 0.895 3.105 20 H -0.280 1.280 21 H -0.286 1.286 22 H -0.275 1.275 23 C 0.121 3.879 24 C -0.127 4.127 25 H 0.058 0.942 26 H 0.056 0.944 27 H 0.049 0.951 28 H 0.060 0.940 29 H 0.062 0.938 30 H 0.052 0.948 31 H 0.061 0.939 32 H 0.056 0.944 33 H 0.069 0.931 34 H 0.075 0.925 35 H 0.068 0.932 36 H 0.089 0.911 37 H 0.116 0.884 38 H 0.116 0.884 39 H 0.027 0.973 40 H 0.095 0.905 41 H 0.035 0.965 42 H 0.036 0.964 43 H 0.095 0.905 44 H 0.027 0.973 45 H 0.262 0.738 46 H 0.068 0.932 47 H 0.090 0.910 48 H 0.072 0.928 49 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.585 -6.930 14.235 19.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.151 4.151 3 C -0.058 4.058 4 C -0.206 4.206 5 C -0.168 4.168 6 C -0.005 4.005 7 N -0.843 5.843 8 S 2.692 3.308 9 O -0.954 6.954 10 O -0.954 6.954 11 C -0.715 4.715 12 C 0.079 3.921 13 C -0.221 4.221 14 C -0.220 4.220 15 C -0.540 4.540 16 H 0.076 0.924 17 C -0.137 4.137 18 N -0.522 5.522 19 Si 0.723 3.277 20 H -0.207 1.207 21 H -0.211 1.211 22 H -0.200 1.200 23 C -0.005 4.005 24 C -0.166 4.166 25 H 0.077 0.923 26 H 0.075 0.925 27 H 0.068 0.932 28 H 0.079 0.921 29 H 0.081 0.919 30 H 0.071 0.929 31 H 0.080 0.920 32 H 0.075 0.925 33 H 0.088 0.912 34 H 0.094 0.906 35 H 0.087 0.913 36 H 0.108 0.892 37 H 0.134 0.866 38 H 0.134 0.866 39 H 0.046 0.954 40 H 0.113 0.887 41 H 0.055 0.945 42 H 0.055 0.945 43 H 0.113 0.887 44 H 0.046 0.954 45 H 0.072 0.928 46 H 0.087 0.913 47 H 0.108 0.892 48 H 0.090 0.910 49 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -11.223 -5.877 14.261 19.075 hybrid contribution 0.127 -1.469 -1.039 1.804 sum -11.096 -7.346 13.221 18.759 Atomic orbital electron populations 1.21892 0.96054 1.01300 1.02076 1.21571 0.95848 0.95780 1.01902 1.20476 0.94942 0.94960 0.95414 1.22038 1.00971 1.00808 0.96740 1.22084 1.00836 0.95787 0.98051 1.21393 0.79557 0.96665 1.02897 1.57989 1.15834 1.68855 1.41638 1.05707 0.73388 0.76490 0.75198 1.93527 1.67034 1.53872 1.80938 1.93527 1.48547 1.83029 1.70272 1.30569 1.09973 1.15561 1.15354 1.17931 0.89978 0.93710 0.90462 1.22266 0.99979 0.97776 1.02043 1.22265 1.00455 0.99549 0.99778 1.20937 1.31364 0.96905 1.04800 0.92382 1.24935 0.95520 0.95361 0.97916 1.69799 1.34352 1.17445 1.30599 0.86546 0.77730 0.81481 0.81935 1.20655 1.21126 1.19985 1.21372 0.98258 0.91201 0.89645 1.22019 0.95049 0.96832 1.02694 0.92331 0.92516 0.93173 0.92132 0.91931 0.92852 0.91962 0.92457 0.91192 0.90630 0.91341 0.89230 0.86590 0.86597 0.95396 0.88679 0.94546 0.94531 0.88686 0.95414 0.92758 0.91344 0.89201 0.90965 0.91167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.14 9.21 37.16 0.34 -0.79 16 2 C -0.11 -0.92 4.99 -26.74 -0.13 -1.05 16 3 C -0.06 -0.52 0.54 -154.47 -0.08 -0.60 16 4 C -0.15 -1.22 7.36 37.16 0.27 -0.95 16 5 C -0.13 -1.28 4.59 -26.61 -0.12 -1.40 16 6 C 0.12 1.46 5.85 -3.71 -0.02 1.44 16 7 N -1.01 -14.35 3.22 -113.51 -0.37 -14.72 16 8 S 2.59 48.95 4.45 -107.50 -0.48 48.47 16 9 O -0.96 -20.40 14.34 -57.54 -0.83 -21.22 16 10 O -0.96 -20.40 14.35 -57.54 -0.83 -21.23 16 11 C -0.58 -11.46 5.12 37.16 0.19 -11.27 16 12 C 0.08 1.99 0.52 -155.66 -0.08 1.91 16 13 C -0.16 -4.05 7.78 37.16 0.29 -3.76 16 14 C -0.16 -4.04 7.77 37.16 0.29 -3.75 16 15 C -0.50 -13.19 8.01 -34.44 -0.28 -13.46 16 16 H 0.06 1.49 7.74 -52.48 -0.41 1.09 16 17 C 0.06 1.72 5.15 -17.82 -0.09 1.63 16 18 N -0.88 -24.23 9.35 55.43 0.52 -23.71 16 19 Si 0.90 20.68 29.54 -169.99 -5.02 15.66 16 20 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 21 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 22 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 23 C 0.12 1.46 5.84 -3.71 -0.02 1.44 16 24 C -0.13 -1.26 4.91 -26.61 -0.13 -1.39 16 25 H 0.06 0.43 6.40 -51.93 -0.33 0.10 16 26 H 0.06 0.39 6.43 -51.93 -0.33 0.05 16 27 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 30 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.06 0.56 4.98 -51.93 -0.26 0.30 16 32 H 0.06 0.43 6.43 -51.93 -0.33 0.09 16 33 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.08 0.64 6.36 -51.93 -0.33 0.31 16 35 H 0.07 0.74 6.69 -51.93 -0.35 0.40 16 36 H 0.09 1.15 7.10 -51.93 -0.37 0.78 16 37 H 0.12 2.09 8.14 -51.92 -0.42 1.67 16 38 H 0.12 2.09 8.14 -51.92 -0.42 1.67 16 39 H 0.03 0.66 5.46 -51.93 -0.28 0.38 16 40 H 0.09 2.54 6.07 -51.93 -0.32 2.23 16 41 H 0.04 0.86 8.14 -51.93 -0.42 0.43 16 42 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 43 H 0.09 2.54 6.07 -51.93 -0.32 2.22 16 44 H 0.03 0.65 5.47 -51.93 -0.28 0.37 16 45 H 0.26 6.87 8.31 -40.82 -0.34 6.53 16 46 H 0.07 0.74 6.69 -51.93 -0.35 0.40 16 47 H 0.09 1.15 7.11 -51.93 -0.37 0.79 16 48 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 49 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 361.05 15.07 5.44 5.44 Total: -1.00 -30.77 361.05 -9.54 -40.32 By element: Atomic # 1 Polarization: 11.42 SS G_CDS: -8.41 Total: 3.01 kcal Atomic # 6 Polarization: -32.44 SS G_CDS: 0.42 Total: -32.02 kcal Atomic # 7 Polarization: -38.58 SS G_CDS: 0.15 Total: -38.42 kcal Atomic # 8 Polarization: -40.80 SS G_CDS: -1.65 Total: -42.45 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.66 kcal Atomic # 16 Polarization: 48.95 SS G_CDS: -0.48 Total: 48.47 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -30.77 -9.54 -40.32 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451145126.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.825 kcal (2) G-P(sol) polarization free energy of solvation -30.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.318 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds