Wall clock time and date at job start Tue Mar 31 2020 12:20:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.53006 * 109.45960 * 59.99880 * 3 2 1 5 5 C 1.53037 * 109.46046 * 300.02849 * 3 2 1 6 6 C 1.53201 * 109.31127 * 178.59697 * 5 3 2 7 7 N 1.46921 * 108.76377 * 54.66142 * 6 5 3 8 8 S 1.65593 * 120.63350 * 126.36227 * 7 6 5 9 9 O 1.42099 * 104.27819 * 26.08763 * 8 7 6 10 10 O 1.42100 * 104.28111 * 153.94836 * 8 7 6 11 11 C 1.81398 * 104.45007 * 270.01717 * 8 7 6 12 12 C 1.53000 * 109.47587 * 179.97438 * 11 8 7 13 13 C 1.53001 * 109.47075 * 300.00299 * 12 11 8 14 14 C 1.53005 * 109.46915 * 59.99944 * 12 11 8 15 15 C 1.50700 * 109.47386 * 179.97438 * 12 11 8 16 16 H 1.08003 * 120.00052 * 0.02562 * 15 12 11 17 17 C 1.37877 * 119.99922 * 179.97438 * 15 12 11 18 18 N 1.31509 * 120.00191 * 0.02562 * 17 15 12 19 19 Si 1.86799 * 119.99806 * 180.02562 * 17 15 12 20 20 H 1.48500 * 109.47097 * 90.00347 * 19 17 15 21 21 H 1.48499 * 109.47358 * 210.00124 * 19 17 15 22 22 H 1.48500 * 109.47452 * 330.00399 * 19 17 15 23 23 C 1.46932 * 118.73592 * 306.37486 * 7 6 5 24 24 C 1.53043 * 109.46339 * 179.97438 * 3 2 1 25 25 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 26 26 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 27 27 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 29 29 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 30 30 H 1.09002 * 109.46887 * 60.00551 * 4 3 2 31 31 H 1.08998 * 109.46950 * 180.02562 * 4 3 2 32 32 H 1.08996 * 109.47354 * 300.00196 * 4 3 2 33 33 H 1.08996 * 109.49850 * 298.55996 * 5 3 2 34 34 H 1.08997 * 109.49675 * 58.66461 * 5 3 2 35 35 H 1.08997 * 109.59941 * 294.86415 * 6 5 3 36 36 H 1.09004 * 109.58094 * 174.43573 * 6 5 3 37 37 H 1.09005 * 109.47168 * 299.99980 * 11 8 7 38 38 H 1.08999 * 109.47097 * 59.99888 * 11 8 7 39 39 H 1.08993 * 109.47241 * 59.99304 * 13 12 11 40 40 H 1.09002 * 109.46994 * 180.02562 * 13 12 11 41 41 H 1.08999 * 109.46896 * 299.99584 * 13 12 11 42 42 H 1.09005 * 109.47099 * 60.00383 * 14 12 11 43 43 H 1.08998 * 109.46884 * 180.02562 * 14 12 11 44 44 H 1.08996 * 109.47339 * 300.00120 * 14 12 11 45 45 H 0.96998 * 120.00351 * 179.97438 * 18 17 15 46 46 H 1.09000 * 109.58765 * 293.82873 * 23 7 6 47 47 H 1.09006 * 109.70332 * 173.46858 * 23 7 6 48 48 H 1.08999 * 109.50071 * 301.33691 * 24 3 2 49 49 H 1.08998 * 109.49573 * 61.40479 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 1.5299 2.1634 1.2494 5 6 1.5292 2.1638 -1.2493 6 6 2.0128 3.6174 -1.2282 7 7 3.4746 3.6270 -1.0816 8 16 4.4249 4.4556 -2.1552 9 8 3.5779 5.4823 -2.6530 10 8 5.5981 4.7676 -1.4167 11 6 4.7949 3.2483 -3.4575 12 6 5.6774 3.9017 -4.5230 13 6 4.9422 5.0981 -5.1305 14 6 6.9830 4.3771 -3.8824 15 6 5.9852 2.8985 -5.6046 16 1 5.5906 1.8954 -5.5389 17 6 6.7699 3.2617 -6.6786 18 7 7.2500 4.4834 -6.7589 19 14 7.1509 2.0184 -8.0197 20 1 6.1081 2.0927 -9.0743 21 1 8.4778 2.3218 -8.6135 22 1 7.1697 0.6524 -7.4375 23 6 4.0774 2.8873 0.0357 24 6 3.5705 1.4421 0.0006 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8933 -0.5139 0.8900 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 1.6495 2.1393 31 1 1.8928 3.1912 1.2493 32 1 0.4399 2.1634 1.2493 33 1 1.9128 1.6655 -2.1395 34 1 0.4395 2.1433 -1.2612 35 1 1.5577 4.1420 -0.3882 36 1 1.7359 4.1080 -2.1614 37 1 5.3182 2.3958 -3.0246 38 1 3.8648 2.9100 -3.9142 39 1 4.7199 5.8235 -4.3480 40 1 5.5708 5.5633 -5.8899 41 1 4.0121 4.7595 -5.5869 42 1 7.5067 3.5247 -3.4496 43 1 7.6115 4.8430 -4.6413 44 1 6.7607 5.1025 -3.0999 45 1 7.8024 4.7388 -7.5142 46 1 3.7906 3.3524 0.9789 47 1 5.1631 2.8961 -0.0609 48 1 3.9339 0.9078 0.8785 49 1 3.9345 0.9501 -0.9013 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451145126.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:20:23 Heat of formation + Delta-G solvation = -108.991057 kcal Electronic energy + Delta-G solvation = -27184.900511 eV Core-core repulsion = 23658.698535 eV Total energy + Delta-G solvation = -3526.201976 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.181 amu Computer time = 1.47 seconds Orbital eigenvalues (eV) -40.54720 -38.17776 -38.13809 -36.91558 -35.97898 -33.63852 -32.15891 -31.13877 -28.37623 -28.25030 -27.71146 -27.25654 -25.73441 -24.26098 -22.49948 -21.28447 -20.23267 -19.20174 -18.38710 -17.89191 -17.15259 -16.95114 -16.69913 -15.95027 -15.75298 -15.61663 -15.37032 -14.96816 -14.89651 -14.67159 -14.44822 -14.20221 -13.90138 -13.75604 -13.40623 -13.06711 -12.92532 -12.90552 -12.85861 -12.78690 -12.71488 -12.60791 -12.48697 -12.29035 -12.18453 -12.13771 -12.04520 -11.97351 -11.60832 -11.58370 -11.51539 -11.26859 -11.05335 -11.00450 -10.61433 -10.42533 -9.78300 -8.03660 -6.22470 -0.62238 1.43286 1.44962 1.53720 1.81174 2.43579 2.91099 3.17878 3.24150 3.66037 3.78827 3.85687 4.00174 4.12189 4.14639 4.28031 4.43524 4.47982 4.52995 4.58285 4.65300 4.67805 4.73698 4.79968 4.83925 4.84724 4.92955 4.96446 4.97284 4.98247 5.06509 5.15739 5.21176 5.23253 5.28638 5.35066 5.36068 5.36632 5.46217 5.48845 5.58757 5.63324 5.72554 5.76356 5.95432 6.10077 6.33194 6.81950 7.45806 8.96274 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.017764 B = 0.004220 C = 0.003755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1575.862218 B = 6633.988888 C = 7454.016237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.110 4.110 3 C -0.056 4.056 4 C -0.147 4.147 5 C -0.127 4.127 6 C 0.112 3.888 7 N -0.998 5.998 8 S 2.609 3.391 9 O -0.989 6.989 10 O -0.989 6.989 11 C -0.584 4.584 12 C 0.069 3.931 13 C -0.158 4.158 14 C -0.158 4.158 15 C -0.516 4.516 16 H 0.061 0.939 17 C 0.018 3.982 18 N -0.908 5.908 19 Si 0.955 3.045 20 H -0.277 1.277 21 H -0.286 1.286 22 H -0.267 1.267 23 C 0.112 3.888 24 C -0.125 4.125 25 H 0.056 0.944 26 H 0.062 0.938 27 H 0.053 0.947 28 H 0.068 0.932 29 H 0.055 0.945 30 H 0.062 0.938 31 H 0.053 0.947 32 H 0.066 0.934 33 H 0.062 0.938 34 H 0.094 0.906 35 H 0.085 0.915 36 H 0.079 0.921 37 H 0.131 0.869 38 H 0.131 0.869 39 H 0.031 0.969 40 H 0.071 0.929 41 H 0.039 0.961 42 H 0.039 0.961 43 H 0.071 0.929 44 H 0.031 0.969 45 H 0.261 0.739 46 H 0.085 0.915 47 H 0.080 0.920 48 H 0.092 0.908 49 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.046 -8.823 15.524 22.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.148 4.148 3 C -0.056 4.056 4 C -0.204 4.204 5 C -0.165 4.165 6 C -0.013 4.013 7 N -0.837 5.837 8 S 2.707 3.293 9 O -0.980 6.980 10 O -0.980 6.980 11 C -0.716 4.716 12 C 0.067 3.933 13 C -0.216 4.216 14 C -0.216 4.216 15 C -0.555 4.555 16 H 0.080 0.920 17 C -0.182 4.182 18 N -0.547 5.547 19 Si 0.781 3.219 20 H -0.203 1.203 21 H -0.212 1.212 22 H -0.192 1.192 23 C -0.013 4.013 24 C -0.164 4.164 25 H 0.075 0.925 26 H 0.081 0.919 27 H 0.072 0.928 28 H 0.086 0.914 29 H 0.074 0.926 30 H 0.081 0.919 31 H 0.072 0.928 32 H 0.085 0.915 33 H 0.081 0.919 34 H 0.112 0.888 35 H 0.103 0.897 36 H 0.098 0.902 37 H 0.149 0.851 38 H 0.149 0.851 39 H 0.050 0.950 40 H 0.090 0.910 41 H 0.058 0.942 42 H 0.058 0.942 43 H 0.090 0.910 44 H 0.049 0.951 45 H 0.071 0.929 46 H 0.103 0.897 47 H 0.098 0.902 48 H 0.110 0.890 49 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -12.683 -7.777 15.544 21.516 hybrid contribution 0.539 -0.872 -1.366 1.708 sum -12.144 -8.650 14.178 20.574 Atomic orbital electron populations 1.21887 0.95375 1.01688 1.02295 1.21533 0.96400 0.94889 1.01965 1.20475 0.94162 0.95661 0.95318 1.22023 1.01611 1.00204 0.96551 1.22100 1.01952 0.94100 0.98388 1.21658 0.77982 0.98508 1.03132 1.57641 1.16431 1.68736 1.40881 1.04914 0.73004 0.76242 0.75095 1.93484 1.67472 1.55298 1.81717 1.93484 1.50236 1.83630 1.70625 1.30498 1.09995 1.16182 1.14923 1.17930 0.90429 0.93451 0.91530 1.22187 0.99641 0.98211 1.01543 1.22186 1.00673 0.99581 0.99127 1.21268 1.31341 0.97412 1.05502 0.92047 1.25678 0.95556 0.96911 1.00009 1.69940 1.34766 1.18912 1.31084 0.85611 0.77322 0.79632 0.79384 1.20325 1.21192 1.19194 1.21638 0.97799 0.92567 0.89254 1.22035 0.95869 0.95177 1.03321 0.92511 0.91860 0.92786 0.91362 0.92623 0.91919 0.92794 0.91503 0.91930 0.88766 0.89710 0.90248 0.85065 0.85059 0.95049 0.91038 0.94203 0.94182 0.91043 0.95071 0.92906 0.89718 0.90211 0.88982 0.91880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.80 9.21 71.98 0.66 -1.14 16 2 C -0.11 -1.46 4.99 30.59 0.15 -1.31 16 3 C -0.06 -0.85 0.54 -52.16 -0.03 -0.88 16 4 C -0.15 -1.94 7.36 71.98 0.53 -1.41 16 5 C -0.13 -2.22 4.59 30.67 0.14 -2.08 16 6 C 0.11 2.51 5.85 86.37 0.50 3.02 16 7 N -1.00 -27.11 3.22 -513.04 -1.65 -28.76 16 8 S 2.61 97.54 4.45 -56.49 -0.25 97.29 16 9 O -0.99 -41.86 14.34 -127.65 -1.83 -43.70 16 10 O -0.99 -41.87 14.35 -127.65 -1.83 -43.70 16 11 C -0.58 -22.67 5.12 71.98 0.37 -22.30 16 12 C 0.07 3.36 0.52 -52.93 -0.03 3.34 16 13 C -0.16 -7.99 7.78 71.98 0.56 -7.43 16 14 C -0.16 -7.98 7.77 71.98 0.56 -7.42 16 15 C -0.52 -27.12 8.01 25.60 0.21 -26.91 16 16 H 0.06 3.10 7.74 -2.91 -0.02 3.08 16 17 C 0.02 0.95 5.15 84.66 0.44 1.39 16 18 N -0.91 -50.70 9.35 21.45 0.20 -50.50 16 19 Si 0.95 42.30 29.54 68.60 2.03 44.33 16 20 H -0.28 -12.08 7.11 99.48 0.71 -11.37 16 21 H -0.29 -12.61 7.11 99.48 0.71 -11.90 16 22 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 23 C 0.11 2.51 5.84 86.36 0.50 3.02 16 24 C -0.13 -2.18 4.91 30.67 0.15 -2.03 16 25 H 0.06 0.68 6.40 -2.39 -0.02 0.66 16 26 H 0.06 0.66 6.43 -2.39 -0.02 0.64 16 27 H 0.05 0.59 8.14 -2.38 -0.02 0.57 16 28 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 29 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 30 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.05 0.81 4.98 -2.39 -0.01 0.79 16 32 H 0.07 0.76 6.43 -2.39 -0.02 0.75 16 33 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 34 H 0.09 1.32 6.36 -2.39 -0.02 1.30 16 35 H 0.08 1.65 6.69 -2.39 -0.02 1.63 16 36 H 0.08 1.96 7.10 -2.39 -0.02 1.94 16 37 H 0.13 4.61 8.14 -2.39 -0.02 4.59 16 38 H 0.13 4.61 8.14 -2.39 -0.02 4.59 16 39 H 0.03 1.52 5.46 -2.39 -0.01 1.50 16 40 H 0.07 3.93 6.07 -2.39 -0.01 3.92 16 41 H 0.04 1.90 8.14 -2.39 -0.02 1.88 16 42 H 0.04 1.91 8.14 -2.38 -0.02 1.89 16 43 H 0.07 3.93 6.07 -2.39 -0.01 3.91 16 44 H 0.03 1.51 5.47 -2.39 -0.01 1.49 16 45 H 0.26 13.96 8.31 -92.71 -0.77 13.19 16 46 H 0.08 1.65 6.69 -2.39 -0.02 1.63 16 47 H 0.08 1.96 7.11 -2.38 -0.02 1.95 16 48 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 49 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 Total: -1.00 -65.64 361.05 2.30 -63.34 By element: Atomic # 1 Polarization: 22.92 SS G_CDS: 0.92 Total: 23.84 kcal Atomic # 6 Polarization: -66.86 SS G_CDS: 4.72 Total: -62.14 kcal Atomic # 7 Polarization: -77.80 SS G_CDS: -1.45 Total: -79.25 kcal Atomic # 8 Polarization: -83.73 SS G_CDS: -3.66 Total: -87.40 kcal Atomic # 14 Polarization: 42.30 SS G_CDS: 2.03 Total: 44.33 kcal Atomic # 16 Polarization: 97.54 SS G_CDS: -0.25 Total: 97.29 kcal Total: -65.64 2.30 -63.34 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451145126.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.652 kcal (2) G-P(sol) polarization free energy of solvation -65.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.339 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.47 seconds