Wall clock time and date at job start Tue Mar 31 2020 13:29:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.47081 * 2 1 4 4 C 1.53001 * 109.46838 * 240.00538 * 2 1 3 5 5 C 1.53004 * 109.47489 * 120.00481 * 2 1 3 6 6 C 1.52998 * 109.46849 * 59.99847 * 5 2 1 7 7 C 1.53001 * 109.46859 * 180.02562 * 6 5 2 8 8 C 1.52999 * 109.47361 * 179.97438 * 7 6 5 9 9 N 1.46497 * 109.47167 * 179.97438 * 8 7 6 10 10 S 1.65602 * 119.99699 * 165.27707 * 9 8 7 11 11 O 1.42108 * 104.27382 * 180.79762 * 10 9 8 12 12 O 1.42093 * 104.27799 * 308.65309 * 10 9 8 13 13 C 1.81394 * 104.45036 * 64.72636 * 10 9 8 14 14 C 1.52998 * 109.47299 * 173.87111 * 13 10 9 15 15 C 1.50699 * 115.54907 * 65.26885 * 14 13 10 16 16 H 1.07999 * 120.00357 * 268.54409 * 15 14 13 17 17 C 1.37880 * 119.99986 * 88.55068 * 15 14 13 18 18 N 1.31511 * 120.00224 * 174.70141 * 17 15 14 19 19 Si 1.86801 * 120.00053 * 354.69864 * 17 15 14 20 20 H 1.48499 * 109.47053 * 92.55135 * 19 17 15 21 21 H 1.48496 * 109.47263 * 212.55623 * 19 17 15 22 22 H 1.48498 * 109.46965 * 332.55652 * 19 17 15 23 23 C 1.53004 * 117.50138 * 279.60087 * 14 13 10 24 24 C 1.53000 * 117.50175 * 210.93986 * 14 13 10 25 25 H 1.09001 * 109.47338 * 299.99417 * 1 2 3 26 26 H 1.09000 * 109.47603 * 59.99847 * 1 2 3 27 27 H 1.09003 * 109.47340 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46722 * 180.02562 * 3 2 1 29 29 H 1.09000 * 109.47026 * 300.00506 * 3 2 1 30 30 H 1.09001 * 109.46558 * 60.00106 * 3 2 1 31 31 H 1.09004 * 109.46964 * 299.99372 * 4 2 1 32 32 H 1.08997 * 109.47767 * 59.99731 * 4 2 1 33 33 H 1.09001 * 109.47207 * 180.02562 * 4 2 1 34 34 H 1.08999 * 109.46504 * 300.00029 * 5 2 1 35 35 H 1.08994 * 109.47005 * 180.02562 * 5 2 1 36 36 H 1.08992 * 109.47504 * 60.00339 * 6 5 2 37 37 H 1.09003 * 109.47249 * 299.99762 * 6 5 2 38 38 H 1.09008 * 109.47382 * 59.99972 * 7 6 5 39 39 H 1.09007 * 109.46903 * 300.00178 * 7 6 5 40 40 H 1.09001 * 109.46558 * 60.00079 * 8 7 6 41 41 H 1.08992 * 109.46928 * 300.00084 * 8 7 6 42 42 H 0.97002 * 120.00318 * 345.00345 * 9 8 7 43 43 H 1.08996 * 109.47300 * 293.87248 * 13 10 9 44 44 H 1.08999 * 109.47414 * 53.87300 * 13 10 9 45 45 H 0.96997 * 120.00232 * 180.02562 * 18 17 15 46 46 H 1.09003 * 117.49542 * 0.02562 * 23 14 13 47 47 H 1.09000 * 117.49964 * 145.01302 * 23 14 13 48 48 H 1.08997 * 117.50053 * 214.97519 * 24 14 13 49 49 H 1.08998 * 117.49690 * 359.97438 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 2.0401 -0.7214 1.2492 6 6 1.5301 -2.1638 1.2490 7 6 2.0396 -2.8850 2.4985 8 6 1.5291 -4.3273 2.4988 9 7 2.0176 -5.0179 3.6949 10 16 1.3417 -6.4587 4.1531 11 8 2.0405 -6.8121 5.3389 12 8 -0.0551 -6.1990 4.1756 13 6 1.7551 -7.6012 2.8062 14 6 1.3131 -9.0164 3.1841 15 6 -0.1737 -9.2163 3.3278 16 1 -0.6454 -9.0868 4.2907 17 6 -0.9317 -9.5646 2.2301 18 7 -2.2094 -9.8408 2.3741 19 14 -0.1440 -9.6442 0.5382 20 1 0.3248 -11.0285 0.2750 21 1 -1.1412 -9.2552 -0.4910 22 1 1.0109 -8.7122 0.4856 23 6 2.2267 -9.8172 4.1141 24 6 2.1326 -10.1839 2.6309 25 1 -0.3634 0.5137 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 3.1300 1.4424 -0.0005 29 1 1.6765 1.9563 -0.8899 30 1 1.6766 1.9562 0.8900 31 1 1.6766 -1.7489 -1.2493 32 1 1.6766 -0.2073 -2.1393 33 1 3.1299 -0.7216 -1.2492 34 1 1.6767 -0.2075 2.1392 35 1 3.1300 -0.7209 1.2493 36 1 1.8933 -2.6776 0.3591 37 1 0.4400 -2.1638 1.2491 38 1 1.6760 -2.3711 3.3884 39 1 3.1297 -2.8849 2.4989 40 1 1.8925 -4.8414 1.6090 41 1 0.4392 -4.3269 2.4987 42 1 2.7395 -4.6334 4.2162 43 1 1.2416 -7.2911 1.8961 44 1 2.8319 -7.5898 2.6376 45 1 -2.7426 -10.0863 1.6019 46 1 3.1425 -9.3357 4.4570 47 1 1.7524 -10.4889 4.8296 48 1 1.5966 -11.0968 2.3713 49 1 2.9865 -9.9439 1.9974 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451166807.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:29:15 Heat of formation + Delta-G solvation = -106.427893 kcal Electronic energy + Delta-G solvation = -25357.688813 eV Core-core repulsion = 21831.597984 eV Total energy + Delta-G solvation = -3526.090829 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.181 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -39.17516 -38.84539 -37.99776 -37.02544 -36.74418 -34.29453 -33.41262 -30.08590 -28.71311 -28.10086 -28.07631 -27.60393 -24.35469 -23.34907 -22.27133 -21.30544 -20.18066 -19.41946 -18.60566 -18.36431 -17.28210 -16.98290 -16.84828 -16.49486 -15.80593 -15.63747 -15.49103 -15.29324 -14.84991 -14.81903 -14.59455 -14.40914 -13.93665 -13.62644 -13.46056 -13.22020 -13.02157 -12.95323 -12.87964 -12.80402 -12.67043 -12.50353 -12.38521 -12.36445 -12.33589 -12.20626 -12.04397 -11.76957 -11.69262 -11.60076 -11.25380 -11.16659 -11.11264 -10.96639 -10.72629 -10.52777 -10.08296 -8.32024 -6.45537 -0.55586 1.36163 1.37272 1.50965 2.03710 2.36121 2.88214 3.00809 3.16298 3.41507 3.75255 3.80045 3.94929 3.96965 4.10495 4.14124 4.18211 4.31444 4.35974 4.39044 4.51615 4.55405 4.62406 4.69813 4.79227 4.82265 4.85936 4.87329 4.95277 4.97973 4.99245 5.02624 5.04327 5.13247 5.16334 5.21835 5.23731 5.30283 5.36223 5.44328 5.45421 5.50008 5.62203 5.62917 5.64992 6.19485 6.21571 6.66092 7.27176 8.84448 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.015446 B = 0.003245 C = 0.002950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1812.355718 B = 8627.897016 C = 9488.515060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.072 4.072 3 C -0.140 4.140 4 C -0.145 4.145 5 C -0.104 4.104 6 C -0.125 4.125 7 C -0.117 4.117 8 C 0.100 3.900 9 N -1.113 6.113 10 S 2.619 3.381 11 O -0.995 6.995 12 O -0.998 6.998 13 C -0.571 4.571 14 C -0.033 4.033 15 C -0.515 4.515 16 H 0.027 0.973 17 C 0.024 3.976 18 N -0.943 5.943 19 Si 0.935 3.065 20 H -0.263 1.263 21 H -0.294 1.294 22 H -0.212 1.212 23 C -0.175 4.175 24 C -0.168 4.168 25 H 0.052 0.948 26 H 0.054 0.946 27 H 0.054 0.946 28 H 0.058 0.942 29 H 0.054 0.946 30 H 0.053 0.947 31 H 0.057 0.943 32 H 0.052 0.948 33 H 0.058 0.942 34 H 0.059 0.941 35 H 0.069 0.931 36 H 0.075 0.925 37 H 0.061 0.939 38 H 0.066 0.934 39 H 0.087 0.913 40 H 0.083 0.917 41 H 0.059 0.941 42 H 0.424 0.576 43 H 0.133 0.867 44 H 0.159 0.841 45 H 0.268 0.732 46 H 0.113 0.887 47 H 0.078 0.922 48 H 0.078 0.922 49 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.134 19.661 -8.660 26.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.072 4.072 3 C -0.197 4.197 4 C -0.202 4.202 5 C -0.141 4.141 6 C -0.163 4.163 7 C -0.156 4.156 8 C -0.026 4.026 9 N -0.875 5.875 10 S 2.716 3.284 11 O -0.985 6.985 12 O -0.988 6.988 13 C -0.704 4.704 14 C -0.035 4.035 15 C -0.552 4.552 16 H 0.045 0.955 17 C -0.175 4.175 18 N -0.581 5.581 19 Si 0.757 3.243 20 H -0.188 1.188 21 H -0.221 1.221 22 H -0.134 1.134 23 C -0.212 4.212 24 C -0.206 4.206 25 H 0.071 0.929 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.077 0.923 29 H 0.073 0.927 30 H 0.072 0.928 31 H 0.076 0.924 32 H 0.071 0.929 33 H 0.077 0.923 34 H 0.078 0.922 35 H 0.088 0.912 36 H 0.094 0.906 37 H 0.079 0.921 38 H 0.085 0.915 39 H 0.105 0.895 40 H 0.101 0.899 41 H 0.078 0.922 42 H 0.260 0.740 43 H 0.151 0.849 44 H 0.177 0.823 45 H 0.077 0.923 46 H 0.131 0.869 47 H 0.097 0.903 48 H 0.097 0.903 49 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 14.310 19.428 -8.018 25.426 hybrid contribution -0.285 -0.395 -0.664 0.824 sum 14.024 19.033 -8.682 25.185 Atomic orbital electron populations 1.21967 0.95106 1.01825 1.01554 1.20572 0.95367 0.95710 0.95574 1.21858 1.01103 0.95074 1.01691 1.21943 1.01138 1.00402 0.96696 1.21598 1.00864 0.94510 0.97174 1.21707 1.01131 0.95886 0.97575 1.21746 1.02180 0.92322 0.99363 1.21602 0.99269 0.95167 0.86526 1.55421 1.53079 1.39069 1.39946 1.04405 0.73384 0.74577 0.76047 1.93469 1.75166 1.84167 1.45719 1.93516 1.34199 1.83896 1.87184 1.30148 1.11699 1.10301 1.18226 1.18771 0.91868 0.88063 1.04827 1.20475 0.90368 1.48707 0.95691 0.95518 1.25989 0.94805 0.92805 1.03872 1.70072 1.08863 1.46709 1.32431 0.85950 0.79878 0.80915 0.77561 1.18831 1.22106 1.13420 1.23106 1.01145 1.03929 0.92998 1.23093 1.02013 0.98856 0.96653 0.92920 0.92717 0.92675 0.92313 0.92655 0.92794 0.92433 0.92857 0.92274 0.92177 0.91189 0.90597 0.92051 0.91531 0.89453 0.89854 0.92214 0.74001 0.84927 0.82259 0.92261 0.86864 0.90334 0.90300 0.86242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.08 8.12 71.98 0.58 -1.49 16 2 C -0.07 -0.91 0.80 -52.18 -0.04 -0.95 16 3 C -0.14 -1.57 8.47 71.98 0.61 -0.96 16 4 C -0.14 -1.76 8.12 71.98 0.58 -1.18 16 5 C -0.10 -1.32 4.27 30.59 0.13 -1.19 16 6 C -0.12 -1.83 4.51 30.59 0.14 -1.69 16 7 C -0.12 -1.87 5.36 30.59 0.16 -1.71 16 8 C 0.10 2.22 6.12 86.38 0.53 2.75 16 9 N -1.11 -28.52 5.89 -187.50 -1.10 -29.63 16 10 S 2.62 99.98 5.19 -56.49 -0.29 99.69 16 11 O -0.99 -41.64 18.08 -127.65 -2.31 -43.94 16 12 O -1.00 -49.31 17.18 -127.65 -2.19 -51.50 16 13 C -0.57 -20.11 5.54 71.98 0.40 -19.71 16 14 C -0.03 -1.45 0.79 -52.93 -0.04 -1.49 16 15 C -0.52 -29.77 8.77 25.60 0.22 -29.55 16 16 H 0.03 1.79 8.06 -2.91 -0.02 1.77 16 17 C 0.02 1.40 5.47 84.66 0.46 1.87 16 18 N -0.94 -59.93 13.96 21.45 0.30 -59.63 16 19 Si 0.93 41.80 24.96 68.60 1.71 43.52 16 20 H -0.26 -11.22 7.11 99.48 0.71 -10.51 16 21 H -0.29 -13.27 7.11 99.48 0.71 -12.56 16 22 H -0.21 -7.90 5.68 99.48 0.57 -7.33 16 23 C -0.17 -6.83 9.96 30.62 0.30 -6.52 16 24 C -0.17 -6.27 7.67 30.62 0.23 -6.03 16 25 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 26 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 27 H 0.05 0.84 6.43 -2.39 -0.02 0.83 16 28 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 29 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 30 H 0.05 0.60 8.14 -2.39 -0.02 0.59 16 31 H 0.06 0.74 6.43 -2.39 -0.02 0.72 16 32 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 33 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 34 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 35 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 36 H 0.08 1.01 6.43 -2.39 -0.02 1.00 16 37 H 0.06 1.02 6.43 -2.39 -0.02 1.01 16 38 H 0.07 1.12 8.14 -2.38 -0.02 1.10 16 39 H 0.09 1.07 8.14 -2.38 -0.02 1.05 16 40 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 41 H 0.06 1.60 7.71 -2.39 -0.02 1.58 16 42 H 0.42 8.52 8.62 -96.74 -0.83 7.68 16 43 H 0.13 4.49 6.53 -2.39 -0.02 4.48 16 44 H 0.16 3.92 8.09 -2.39 -0.02 3.90 16 45 H 0.27 15.82 8.31 -92.71 -0.77 15.05 16 46 H 0.11 3.71 8.14 -2.39 -0.02 3.69 16 47 H 0.08 3.28 8.14 -2.39 -0.02 3.26 16 48 H 0.08 3.17 7.34 -2.39 -0.02 3.16 16 49 H 0.12 3.45 8.14 -2.39 -0.02 3.43 16 Total: -1.00 -78.94 391.62 0.32 -78.61 By element: Atomic # 1 Polarization: 30.82 SS G_CDS: -0.07 Total: 30.74 kcal Atomic # 6 Polarization: -72.14 SS G_CDS: 4.28 Total: -67.86 kcal Atomic # 7 Polarization: -88.45 SS G_CDS: -0.80 Total: -89.26 kcal Atomic # 8 Polarization: -90.94 SS G_CDS: -4.50 Total: -95.45 kcal Atomic # 14 Polarization: 41.80 SS G_CDS: 1.71 Total: 43.52 kcal Atomic # 16 Polarization: 99.98 SS G_CDS: -0.29 Total: 99.69 kcal Total: -78.94 0.32 -78.61 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451166807.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.815 kcal (2) G-P(sol) polarization free energy of solvation -78.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.613 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds