Wall clock time and date at job start Tue Mar 31 2020 12:19:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52995 * 109.47172 * 2 1 4 4 C 1.52996 * 110.64769 * 301.21400 * 3 2 1 5 5 C 1.53006 * 109.46857 * 304.69246 * 4 3 2 6 6 C 1.55163 * 110.71822 * 177.87319 * 3 2 1 7 7 C 1.55122 * 101.48870 * 205.97058 * 6 3 2 8 8 N 1.47434 * 104.72179 * 37.29820 * 7 6 3 9 9 S 1.65594 * 125.64835 * 155.81660 * 8 7 6 10 10 O 1.42096 * 104.28065 * 25.76448 * 9 8 7 11 11 O 1.42105 * 104.27614 * 153.62216 * 9 8 7 12 12 C 1.81403 * 104.44818 * 269.69343 * 9 8 7 13 13 C 1.53003 * 109.46873 * 180.02562 * 12 9 8 14 14 C 1.53003 * 109.46985 * 299.99497 * 13 12 9 15 15 C 1.52994 * 109.47451 * 59.99761 * 13 12 9 16 16 C 1.50703 * 109.46909 * 180.02562 * 13 12 9 17 17 H 1.08003 * 119.99876 * 359.97438 * 16 13 12 18 18 C 1.37881 * 119.99794 * 179.97438 * 16 13 12 19 19 N 1.31505 * 120.00034 * 359.97438 * 18 16 13 20 20 Si 1.86797 * 119.99621 * 179.97438 * 18 16 13 21 21 H 1.48504 * 109.47419 * 359.97438 * 20 18 16 22 22 H 1.48503 * 109.47180 * 119.99913 * 20 18 16 23 23 H 1.48507 * 109.47190 * 240.00038 * 20 18 16 24 24 C 1.47016 * 108.69877 * 335.55342 * 8 7 6 25 25 H 1.08999 * 109.47134 * 65.84174 * 1 2 3 26 26 H 1.08996 * 109.47493 * 185.84885 * 1 2 3 27 27 H 1.09009 * 109.46610 * 305.84897 * 1 2 3 28 28 H 1.09002 * 109.46419 * 240.00405 * 2 1 3 29 29 H 1.08998 * 109.47046 * 120.00794 * 2 1 3 30 30 H 1.08998 * 109.47172 * 64.68528 * 4 3 2 31 31 H 1.08998 * 109.47551 * 184.69698 * 4 3 2 32 32 H 1.09002 * 109.47095 * 62.17886 * 5 4 3 33 33 H 1.08998 * 109.46951 * 182.17681 * 5 4 3 34 34 H 1.09002 * 109.46762 * 302.17947 * 5 4 3 35 35 H 1.09002 * 111.00553 * 324.21709 * 6 3 2 36 36 H 1.09009 * 111.00107 * 88.02668 * 6 3 2 37 37 H 1.09002 * 110.50199 * 278.45954 * 7 6 3 38 38 H 1.09003 * 110.34865 * 156.05858 * 7 6 3 39 39 H 1.09002 * 109.47192 * 299.99745 * 12 9 8 40 40 H 1.08991 * 109.47260 * 60.00167 * 12 9 8 41 41 H 1.08999 * 109.46675 * 60.00253 * 14 13 12 42 42 H 1.09004 * 109.47213 * 180.02562 * 14 13 12 43 43 H 1.08998 * 109.47017 * 300.00180 * 14 13 12 44 44 H 1.09002 * 109.47294 * 60.00277 * 15 13 12 45 45 H 1.09004 * 109.47204 * 180.02562 * 15 13 12 46 46 H 1.08993 * 109.47468 * 300.00016 * 15 13 12 47 47 H 0.97002 * 120.00293 * 180.02562 * 19 18 16 48 48 H 1.08998 * 109.88397 * 120.70549 * 24 8 7 49 49 H 1.09004 * 109.88149 * 241.71221 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 1.5203 2.1984 -1.2244 5 6 1.9059 1.4379 -2.4948 6 6 3.5903 1.4765 0.0539 7 6 3.8463 2.8577 0.7119 8 7 2.7706 3.0026 1.7097 9 16 2.8310 3.9557 3.0624 10 8 3.7618 4.9768 2.7305 11 8 1.4708 4.2646 3.3344 12 6 3.5075 2.8717 4.3501 13 6 3.6127 3.6464 5.6653 14 6 4.5370 4.8508 5.4752 15 6 2.2234 4.1308 6.0845 16 6 4.1753 2.7460 6.7349 17 1 4.4317 1.7235 6.5001 18 6 4.3627 3.2278 8.0132 19 7 4.0509 4.4730 8.2988 20 14 5.0593 2.1115 9.3391 21 1 5.3251 0.7677 8.7656 22 1 6.3259 2.6886 9.8568 23 1 4.0802 1.9906 10.4491 24 6 1.6332 2.1654 1.3013 25 1 -0.3633 0.4206 -0.9377 26 1 -0.3634 -1.0222 0.1047 27 1 -0.3633 0.6019 0.8331 28 1 1.8932 -0.5138 -0.8901 29 1 1.8933 -0.5139 0.8899 30 1 0.4351 2.2819 -1.1663 31 1 1.9607 3.1952 -1.2500 32 1 1.4340 0.4553 -2.4875 33 1 1.5695 1.9959 -3.3686 34 1 2.9889 1.3205 -2.5334 35 1 3.9777 0.6672 0.6728 36 1 4.0170 1.4375 -0.9485 37 1 3.7835 3.6523 -0.0316 38 1 4.8208 2.8702 1.2002 39 1 2.8488 2.0139 4.4858 40 1 4.4971 2.5263 4.0513 41 1 4.1305 5.5021 4.7015 42 1 4.6124 5.4024 6.4124 43 1 5.5268 4.5056 5.1766 44 1 1.5649 3.2728 6.2200 45 1 2.2985 4.6831 7.0213 46 1 1.8169 4.7821 5.3109 47 1 4.1831 4.8121 9.1980 48 1 1.4134 1.4337 2.0787 49 1 0.7582 2.7905 1.1228 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451291828.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:19:18 Heat of formation + Delta-G solvation = -108.631500 kcal Electronic energy + Delta-G solvation = -26859.452125 eV Core-core repulsion = 23333.265741 eV Total energy + Delta-G solvation = -3526.186384 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.181 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.62048 -38.16743 -38.16102 -36.93626 -35.77455 -33.65495 -32.18075 -30.66446 -29.07058 -28.32846 -27.73167 -27.27466 -24.84314 -24.19755 -22.72605 -21.31003 -19.88471 -19.44138 -18.76576 -17.90282 -17.38230 -16.93769 -16.70838 -16.43585 -16.14249 -15.24647 -14.94029 -14.79255 -14.63368 -14.46406 -14.43467 -14.07916 -13.88380 -13.64906 -13.60286 -13.37612 -13.11588 -13.05715 -12.92454 -12.78412 -12.71218 -12.63652 -12.54358 -12.30971 -12.22153 -12.13037 -12.03896 -11.98111 -11.71211 -11.60705 -11.42605 -11.24522 -11.13906 -11.07030 -10.66594 -10.44431 -9.88942 -8.04975 -6.23972 -0.69345 1.42163 1.44838 1.54799 1.79995 2.42909 2.87044 3.09173 3.17942 3.50499 3.67014 3.81418 3.98811 4.11363 4.19916 4.28058 4.38669 4.49607 4.55058 4.56695 4.58982 4.66445 4.72978 4.79964 4.82035 4.82782 4.87838 4.94820 4.98100 5.02173 5.05078 5.10046 5.13594 5.16975 5.31293 5.34011 5.35765 5.37995 5.43210 5.46869 5.50643 5.56906 5.62262 5.71866 5.93357 6.08086 6.31341 6.80663 7.44434 8.95279 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.021838 B = 0.003715 C = 0.003520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1281.848120 B = 7535.319576 C = 7953.352682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.106 4.106 3 C -0.060 4.060 4 C -0.113 4.113 5 C -0.149 4.149 6 C -0.116 4.116 7 C 0.108 3.892 8 N -1.017 6.017 9 S 2.624 3.376 10 O -0.987 6.987 11 O -0.989 6.989 12 C -0.583 4.583 13 C 0.068 3.932 14 C -0.158 4.158 15 C -0.158 4.158 16 C -0.517 4.517 17 H 0.063 0.937 18 C 0.017 3.983 19 N -0.908 5.908 20 Si 0.957 3.043 21 H -0.265 1.265 22 H -0.282 1.282 23 H -0.283 1.283 24 C 0.118 3.882 25 H 0.063 0.937 26 H 0.061 0.939 27 H 0.045 0.955 28 H 0.087 0.913 29 H 0.064 0.936 30 H 0.065 0.935 31 H 0.053 0.947 32 H 0.066 0.934 33 H 0.054 0.946 34 H 0.063 0.937 35 H 0.086 0.914 36 H 0.107 0.893 37 H 0.069 0.931 38 H 0.077 0.923 39 H 0.132 0.868 40 H 0.134 0.866 41 H 0.030 0.970 42 H 0.072 0.928 43 H 0.040 0.960 44 H 0.039 0.961 45 H 0.072 0.928 46 H 0.030 0.970 47 H 0.262 0.738 48 H 0.069 0.931 49 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.169 -10.529 -20.511 23.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.144 4.144 3 C -0.061 4.061 4 C -0.151 4.151 5 C -0.206 4.206 6 C -0.154 4.154 7 C -0.016 4.016 8 N -0.856 5.856 9 S 2.724 3.276 10 O -0.978 6.978 11 O -0.980 6.980 12 C -0.715 4.715 13 C 0.066 3.934 14 C -0.216 4.216 15 C -0.216 4.216 16 C -0.556 4.556 17 H 0.081 0.919 18 C -0.182 4.182 19 N -0.547 5.547 20 Si 0.782 3.218 21 H -0.189 1.189 22 H -0.208 1.208 23 H -0.209 1.209 24 C -0.007 4.007 25 H 0.082 0.918 26 H 0.080 0.920 27 H 0.064 0.936 28 H 0.106 0.894 29 H 0.083 0.917 30 H 0.084 0.916 31 H 0.071 0.929 32 H 0.085 0.915 33 H 0.074 0.926 34 H 0.082 0.918 35 H 0.105 0.895 36 H 0.125 0.875 37 H 0.087 0.913 38 H 0.095 0.905 39 H 0.150 0.850 40 H 0.152 0.848 41 H 0.049 0.951 42 H 0.091 0.909 43 H 0.059 0.941 44 H 0.058 0.942 45 H 0.091 0.909 46 H 0.049 0.951 47 H 0.071 0.929 48 H 0.087 0.913 49 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -3.457 -9.416 -20.278 22.623 hybrid contribution 0.462 -0.485 1.504 1.647 sum -2.995 -9.901 -18.773 21.435 Atomic orbital electron populations 1.21878 0.95743 1.01970 1.02026 1.21564 0.96092 0.93549 1.03203 1.21660 0.95636 0.95993 0.92847 1.21562 1.00956 0.98606 0.93931 1.21836 1.02131 1.00615 0.96016 1.23023 0.94600 0.95331 1.02471 1.22293 0.89506 0.99180 0.90650 1.58544 1.25251 1.63591 1.38214 1.04475 0.73776 0.75224 0.74171 1.93489 1.65898 1.55325 1.83052 1.93484 1.35845 1.83478 1.85171 1.30485 1.12974 1.14787 1.13297 1.17945 0.93193 0.92620 0.89630 1.22195 0.99163 0.98843 1.01425 1.22192 0.96725 1.00146 1.02568 1.21304 1.42446 0.97620 0.94219 0.91913 1.25701 0.95664 0.96378 1.00506 1.69948 1.48462 1.15576 1.20723 0.85528 0.77864 0.79326 0.79035 1.18917 1.20840 1.20890 1.22086 0.87794 0.93008 0.97840 0.91848 0.92028 0.93630 0.89424 0.91726 0.91600 0.92867 0.91508 0.92648 0.91779 0.89536 0.87477 0.91271 0.90504 0.84950 0.84750 0.95128 0.90932 0.94076 0.94172 0.90937 0.95126 0.92873 0.91293 0.92287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.11 9.29 71.98 0.67 -1.44 16 2 C -0.11 -1.38 4.38 30.59 0.13 -1.24 16 3 C -0.06 -0.98 0.35 -50.99 -0.02 -1.00 16 4 C -0.11 -1.70 4.40 30.59 0.13 -1.57 16 5 C -0.15 -1.57 9.27 71.98 0.67 -0.90 16 6 C -0.12 -1.77 5.95 32.06 0.19 -1.58 16 7 C 0.11 2.44 6.58 86.93 0.57 3.01 16 8 N -1.02 -29.16 3.62 -506.01 -1.83 -30.99 16 9 S 2.62 101.28 4.69 -56.49 -0.26 101.01 16 10 O -0.99 -42.90 15.22 -127.65 -1.94 -44.84 16 11 O -0.99 -43.41 15.22 -127.65 -1.94 -45.35 16 12 C -0.58 -22.97 5.12 71.98 0.37 -22.60 16 13 C 0.07 3.37 0.52 -52.93 -0.03 3.35 16 14 C -0.16 -8.06 7.77 71.98 0.56 -7.50 16 15 C -0.16 -8.09 7.78 71.98 0.56 -7.53 16 16 C -0.52 -27.27 8.01 25.60 0.21 -27.06 16 17 H 0.06 3.18 7.74 -2.91 -0.02 3.16 16 18 C 0.02 0.90 5.15 84.66 0.44 1.34 16 19 N -0.91 -50.80 9.35 21.45 0.20 -50.60 16 20 Si 0.96 42.34 29.54 68.60 2.03 44.37 16 21 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 22 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 23 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 24 C 0.12 2.82 5.05 86.73 0.44 3.26 16 25 H 0.06 0.76 6.85 -2.39 -0.02 0.74 16 26 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 27 H 0.04 0.73 7.19 -2.38 -0.02 0.71 16 28 H 0.09 0.85 6.59 -2.39 -0.02 0.83 16 29 H 0.06 0.88 8.11 -2.39 -0.02 0.86 16 30 H 0.07 1.01 6.93 -2.39 -0.02 0.99 16 31 H 0.05 0.94 7.38 -2.39 -0.02 0.92 16 32 H 0.07 0.60 6.51 -2.39 -0.02 0.58 16 33 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 34 H 0.06 0.59 6.48 -2.39 -0.02 0.57 16 35 H 0.09 1.22 8.05 -2.39 -0.02 1.20 16 36 H 0.11 1.15 6.37 -2.38 -0.02 1.13 16 37 H 0.07 1.51 7.67 -2.39 -0.02 1.50 16 38 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 39 H 0.13 4.72 8.14 -2.39 -0.02 4.70 16 40 H 0.13 4.74 8.14 -2.40 -0.02 4.72 16 41 H 0.03 1.49 5.46 -2.39 -0.01 1.48 16 42 H 0.07 4.00 6.07 -2.38 -0.01 3.99 16 43 H 0.04 1.97 8.14 -2.39 -0.02 1.95 16 44 H 0.04 1.94 8.14 -2.39 -0.02 1.92 16 45 H 0.07 4.01 6.07 -2.38 -0.01 4.00 16 46 H 0.03 1.50 5.46 -2.39 -0.01 1.48 16 47 H 0.26 13.95 8.31 -92.71 -0.77 13.18 16 48 H 0.07 1.58 7.71 -2.39 -0.02 1.56 16 49 H 0.06 1.52 7.85 -2.39 -0.02 1.50 16 Total: -1.00 -67.27 368.35 2.05 -65.22 By element: Atomic # 1 Polarization: 21.74 SS G_CDS: 0.91 Total: 22.66 kcal Atomic # 6 Polarization: -66.36 SS G_CDS: 4.89 Total: -61.47 kcal Atomic # 7 Polarization: -79.96 SS G_CDS: -1.63 Total: -81.59 kcal Atomic # 8 Polarization: -86.31 SS G_CDS: -3.89 Total: -90.20 kcal Atomic # 14 Polarization: 42.34 SS G_CDS: 2.03 Total: 44.37 kcal Atomic # 16 Polarization: 101.28 SS G_CDS: -0.26 Total: 101.01 kcal Total: -67.27 2.05 -65.22 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451291828.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.409 kcal (2) G-P(sol) polarization free energy of solvation -67.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.223 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds