Wall clock time and date at job start Tue Mar 31 2020 13:29:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.46821 * 2 1 4 4 C 1.52989 * 109.47394 * 120.00397 * 2 1 3 5 5 C 1.53004 * 109.47245 * 79.11008 * 4 2 1 6 6 C 1.53003 * 109.46996 * 65.74806 * 5 4 2 7 7 C 1.52993 * 109.47045 * 305.74647 * 5 4 2 8 8 C 1.52996 * 109.47053 * 185.74607 * 5 4 2 9 9 N 1.46499 * 109.47219 * 179.97438 * 8 5 4 10 10 S 1.65598 * 120.00049 * 165.27526 * 9 8 5 11 11 O 1.42102 * 104.27778 * 180.80102 * 10 9 8 12 12 O 1.42098 * 104.27763 * 308.65437 * 10 9 8 13 13 C 1.81398 * 104.44972 * 64.72857 * 10 9 8 14 14 C 1.53008 * 109.47223 * 180.18534 * 13 10 9 15 15 C 1.50695 * 115.54774 * 61.26348 * 14 13 10 16 16 H 1.08002 * 120.00702 * 264.62941 * 15 14 13 17 17 C 1.37879 * 120.00005 * 84.63118 * 15 14 13 18 18 N 1.31509 * 120.00322 * 177.06603 * 17 15 14 19 19 Si 1.86805 * 119.99666 * 357.06391 * 17 15 14 20 20 H 1.48498 * 109.47009 * 90.01691 * 19 17 15 21 21 H 1.48500 * 109.47013 * 210.01461 * 19 17 15 22 22 H 1.48493 * 109.47369 * 330.01753 * 19 17 15 23 23 C 1.52999 * 117.49813 * 275.59550 * 14 13 10 24 24 C 1.52994 * 117.49825 * 206.93882 * 14 13 10 25 25 H 1.08999 * 109.47184 * 162.19904 * 1 2 3 26 26 H 1.09000 * 109.46873 * 282.19324 * 1 2 3 27 27 H 1.08995 * 109.47597 * 42.19532 * 1 2 3 28 28 H 1.09007 * 109.46940 * 240.00554 * 2 1 3 29 29 H 1.09003 * 109.46912 * 180.02562 * 3 2 1 30 30 H 1.08998 * 109.47189 * 300.00620 * 3 2 1 31 31 H 1.08999 * 109.46721 * 60.00313 * 3 2 1 32 32 H 1.09001 * 109.47409 * 319.10673 * 4 2 1 33 33 H 1.09008 * 109.47439 * 199.10836 * 4 2 1 34 34 H 1.08997 * 109.47169 * 180.02562 * 6 5 4 35 35 H 1.08999 * 109.47112 * 300.00144 * 6 5 4 36 36 H 1.09002 * 109.47146 * 60.00171 * 6 5 4 37 37 H 1.08998 * 109.47163 * 321.21484 * 7 5 4 38 38 H 1.09005 * 109.46833 * 81.21189 * 7 5 4 39 39 H 1.08997 * 109.47427 * 201.21338 * 7 5 4 40 40 H 1.08999 * 109.47292 * 59.99804 * 8 5 4 41 41 H 1.09002 * 109.47447 * 300.00047 * 8 5 4 42 42 H 0.97000 * 120.00114 * 345.00756 * 9 8 5 43 43 H 1.08999 * 109.47071 * 300.18535 * 13 10 9 44 44 H 1.09003 * 109.46976 * 60.18827 * 13 10 9 45 45 H 0.96999 * 120.00353 * 180.02562 * 18 17 15 46 46 H 1.09006 * 117.49708 * 0.02562 * 23 14 13 47 47 H 1.09000 * 117.49866 * 145.01467 * 23 14 13 48 48 H 1.09000 * 117.49450 * 214.97844 * 24 14 13 49 49 H 1.08996 * 117.49883 * 359.96955 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7213 1.2491 5 6 1.9532 -2.2339 1.0358 6 6 2.9204 -2.6487 -0.0747 7 6 0.5254 -2.6113 0.6360 8 6 2.3268 -2.9541 2.3329 9 7 2.2430 -4.4024 2.1290 10 16 2.9324 -5.4342 3.2255 11 8 2.6729 -6.7287 2.6998 12 8 4.2624 -4.9552 3.3693 13 6 1.9908 -5.1668 4.7527 14 6 2.5421 -6.0713 5.8568 15 6 3.9833 -5.8371 6.2297 16 1 4.7615 -6.4372 5.7817 17 6 4.3085 -4.8566 7.1428 18 7 5.5598 -4.6904 7.5118 19 14 2.9716 -3.7640 7.8560 20 1 2.4303 -4.3862 9.0910 21 1 3.5421 -2.4322 8.1818 22 1 1.8796 -3.6052 6.8623 23 6 2.0210 -7.5085 5.9186 24 6 1.5825 -6.4890 6.9728 25 1 -0.3633 -0.9785 -0.3142 26 1 -0.3633 0.2171 1.0045 27 1 -0.3634 0.7613 -0.6902 28 1 1.8933 -0.5138 -0.8901 29 1 3.1300 1.4426 -0.0005 30 1 1.6765 1.9564 -0.8899 31 1 1.6766 1.9563 0.8900 32 1 1.4288 -0.4395 2.1065 33 1 3.0767 -0.4394 1.4337 34 1 2.8582 -3.7262 -0.2269 35 1 2.6543 -2.1356 -0.9988 36 1 3.9376 -2.3798 0.2102 37 1 -0.1826 -2.0095 1.2057 38 1 0.3854 -2.4259 -0.4290 39 1 0.3564 -3.6674 0.8462 40 1 1.6378 -2.6585 3.1241 41 1 3.3440 -2.6852 2.6179 42 1 1.7804 -4.7570 1.3537 43 1 2.0817 -4.1244 5.0578 44 1 0.9413 -5.4044 4.5787 45 1 5.7886 -4.0009 8.1545 46 1 1.2857 -7.8098 5.1725 47 1 2.7205 -8.2846 6.2294 48 1 1.9937 -6.5947 7.9767 49 1 0.5585 -6.1191 6.9207 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451299689.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:29:22 Heat of formation + Delta-G solvation = -64.439743 kcal Electronic energy + Delta-G solvation = -26441.104206 eV Core-core repulsion = 22916.834120 eV Total energy + Delta-G solvation = -3524.270086 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.181 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.28493 -37.11263 -36.29712 -35.45921 -35.04304 -32.20805 -32.14194 -28.56357 -28.51354 -27.08894 -26.45236 -25.52640 -25.36040 -21.70778 -20.54934 -19.66771 -18.96758 -18.63647 -17.13238 -16.65329 -15.88572 -15.62446 -15.31497 -15.08369 -14.84946 -14.39939 -14.08636 -13.90012 -13.70769 -13.50759 -13.25540 -12.98729 -12.67522 -12.57701 -12.41196 -12.25670 -12.10380 -11.80684 -11.70616 -11.43200 -11.36166 -11.16600 -11.12608 -10.96905 -10.89822 -10.86486 -10.71141 -10.64814 -10.46877 -10.39573 -10.19223 -10.06088 -9.73570 -9.20550 -9.16530 -8.65611 -8.44283 -6.14883 -4.22256 1.00258 3.21441 3.30587 3.31849 3.44121 4.34792 4.38159 4.50359 4.60468 4.64170 4.80307 4.86355 4.87152 4.95095 5.04092 5.09201 5.32696 5.36608 5.41484 5.43441 5.50181 5.53660 5.58694 5.63176 5.71667 5.72466 5.76569 5.80374 5.81195 5.88983 5.93731 5.98309 6.02146 6.03776 6.08777 6.15976 6.21132 6.23560 6.31741 6.35842 6.42183 6.63902 6.87305 7.05292 7.25951 7.60235 8.38768 8.91165 9.46013 10.96848 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.015804 B = 0.004186 C = 0.003800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1771.297548 B = 6687.848487 C = 7367.209851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.097 4.097 3 C -0.148 4.148 4 C -0.107 4.107 5 C -0.068 4.068 6 C -0.144 4.144 7 C -0.151 4.151 8 C 0.123 3.877 9 N -1.131 6.131 10 S 2.615 3.385 11 O -0.974 6.974 12 O -0.932 6.932 13 C -0.581 4.581 14 C 0.002 3.998 15 C -0.507 4.507 16 H 0.087 0.913 17 C 0.091 3.909 18 N -0.882 5.882 19 Si 0.871 3.129 20 H -0.275 1.275 21 H -0.290 1.290 22 H -0.257 1.257 23 C -0.178 4.178 24 C -0.185 4.185 25 H 0.071 0.929 26 H 0.053 0.947 27 H 0.046 0.954 28 H 0.074 0.926 29 H 0.054 0.946 30 H 0.051 0.949 31 H 0.053 0.947 32 H 0.066 0.934 33 H 0.068 0.932 34 H 0.058 0.942 35 H 0.056 0.944 36 H 0.059 0.941 37 H 0.063 0.937 38 H 0.062 0.938 39 H 0.055 0.945 40 H 0.061 0.939 41 H 0.083 0.917 42 H 0.409 0.591 43 H 0.125 0.875 44 H 0.106 0.894 45 H 0.267 0.733 46 H 0.080 0.920 47 H 0.095 0.905 48 H 0.092 0.908 49 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.080 9.324 -14.116 20.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.115 4.115 3 C -0.205 4.205 4 C -0.146 4.146 5 C -0.070 4.070 6 C -0.201 4.201 7 C -0.208 4.208 8 C -0.004 4.004 9 N -0.889 5.889 10 S 2.710 3.290 11 O -0.965 6.965 12 O -0.922 6.922 13 C -0.712 4.712 14 C -0.001 4.001 15 C -0.544 4.544 16 H 0.105 0.895 17 C -0.114 4.114 18 N -0.517 5.517 19 Si 0.698 3.302 20 H -0.201 1.201 21 H -0.216 1.216 22 H -0.181 1.181 23 C -0.216 4.216 24 C -0.224 4.224 25 H 0.090 0.910 26 H 0.072 0.928 27 H 0.065 0.935 28 H 0.092 0.908 29 H 0.073 0.927 30 H 0.070 0.930 31 H 0.072 0.928 32 H 0.085 0.915 33 H 0.086 0.914 34 H 0.077 0.923 35 H 0.075 0.925 36 H 0.079 0.921 37 H 0.082 0.918 38 H 0.081 0.919 39 H 0.074 0.926 40 H 0.079 0.921 41 H 0.101 0.899 42 H 0.243 0.757 43 H 0.143 0.857 44 H 0.124 0.876 45 H 0.077 0.923 46 H 0.099 0.901 47 H 0.113 0.887 48 H 0.111 0.889 49 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -11.087 8.945 -14.027 19.993 hybrid contribution -1.460 0.944 0.636 1.851 sum -12.547 9.889 -13.391 20.846 Atomic orbital electron populations 1.22378 0.95488 1.02516 1.01622 1.21155 0.95798 0.95852 0.98718 1.21878 1.00982 0.96202 1.01461 1.21784 1.01916 0.93110 0.97740 1.20711 0.96070 0.95081 0.95091 1.21951 0.99198 1.01563 0.97408 1.22310 0.95668 1.01504 1.01290 1.21333 1.02359 0.79564 0.97129 1.56034 1.75792 1.16700 1.40383 1.04907 0.75613 0.73137 0.75343 1.93511 1.86434 1.38615 1.77926 1.93597 1.32773 1.80141 1.85656 1.30331 1.11578 1.10114 1.19175 1.18859 0.95426 0.91840 0.93983 1.20341 0.87755 1.20174 1.26137 0.89473 1.24918 0.95056 0.96173 0.95280 1.69884 1.17343 1.32785 1.31691 0.86997 0.82775 0.80061 0.80338 1.20050 1.21645 1.18124 1.23003 1.03224 0.93565 1.01773 1.22989 0.98181 1.05378 0.95824 0.91001 0.92777 0.93458 0.90778 0.92697 0.93029 0.92805 0.91522 0.91351 0.92318 0.92463 0.92142 0.91804 0.91876 0.92601 0.92120 0.89862 0.75714 0.85671 0.87579 0.92327 0.90112 0.88666 0.88927 0.90763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.17 7.88 37.16 0.29 -0.88 16 2 C -0.10 -0.75 2.55 -90.62 -0.23 -0.98 16 3 C -0.15 -1.10 9.03 37.16 0.34 -0.77 16 4 C -0.11 -0.97 3.90 -26.73 -0.10 -1.07 16 5 C -0.07 -0.67 0.57 -154.51 -0.09 -0.76 16 6 C -0.14 -1.45 8.01 37.16 0.30 -1.15 16 7 C -0.15 -1.27 6.77 37.15 0.25 -1.02 16 8 C 0.12 1.57 5.01 -4.04 -0.02 1.55 16 9 N -1.13 -16.02 5.08 -10.62 -0.05 -16.07 16 10 S 2.62 51.35 5.22 -107.50 -0.56 50.78 16 11 O -0.97 -20.85 18.08 -57.54 -1.04 -21.89 16 12 O -0.93 -22.41 16.68 -57.54 -0.96 -23.37 16 13 C -0.58 -11.30 5.60 37.16 0.21 -11.09 16 14 C 0.00 0.04 0.84 -155.66 -0.13 -0.09 16 15 C -0.51 -14.15 8.24 -34.44 -0.28 -14.43 16 16 H 0.09 2.71 8.06 -52.49 -0.42 2.28 16 17 C 0.09 2.57 5.47 -17.82 -0.10 2.47 16 18 N -0.88 -26.73 13.96 55.43 0.77 -25.96 16 19 Si 0.87 20.82 25.16 -169.99 -4.28 16.54 16 20 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 21 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 22 H -0.26 -5.57 5.41 56.52 0.31 -5.26 16 23 C -0.18 -3.68 9.95 -26.70 -0.27 -3.94 16 24 C -0.18 -3.83 7.79 -26.70 -0.21 -4.03 16 25 H 0.07 0.49 4.58 -51.93 -0.24 0.25 16 26 H 0.05 0.40 7.68 -51.93 -0.40 0.00 16 27 H 0.05 0.32 8.01 -51.93 -0.42 -0.10 16 28 H 0.07 0.58 5.99 -51.92 -0.31 0.27 16 29 H 0.05 0.41 8.13 -51.93 -0.42 -0.01 16 30 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.07 0.59 7.73 -51.93 -0.40 0.19 16 33 H 0.07 0.64 7.99 -51.92 -0.41 0.23 16 34 H 0.06 0.62 7.20 -51.93 -0.37 0.24 16 35 H 0.06 0.48 6.26 -51.93 -0.33 0.15 16 36 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 37 H 0.06 0.51 6.47 -51.93 -0.34 0.17 16 38 H 0.06 0.47 6.31 -51.93 -0.33 0.14 16 39 H 0.06 0.48 6.26 -51.93 -0.33 0.16 16 40 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.08 1.19 7.71 -51.93 -0.40 0.79 16 42 H 0.41 4.87 6.46 -34.47 -0.22 4.65 16 43 H 0.13 2.38 6.04 -51.92 -0.31 2.07 16 44 H 0.11 1.68 8.11 -51.92 -0.42 1.25 16 45 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 46 H 0.08 1.48 8.14 -51.93 -0.42 1.05 16 47 H 0.09 1.97 8.14 -51.93 -0.42 1.55 16 48 H 0.09 1.99 7.58 -51.93 -0.39 1.60 16 49 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 LS Contribution 377.28 15.07 5.69 5.69 Total: -1.00 -33.74 377.28 -9.13 -42.87 By element: Atomic # 1 Polarization: 16.28 SS G_CDS: -8.65 Total: 7.62 kcal Atomic # 6 Polarization: -36.17 SS G_CDS: -0.04 Total: -36.21 kcal Atomic # 7 Polarization: -42.75 SS G_CDS: 0.72 Total: -42.03 kcal Atomic # 8 Polarization: -43.26 SS G_CDS: -2.00 Total: -45.26 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -4.28 Total: 16.54 kcal Atomic # 16 Polarization: 51.35 SS G_CDS: -0.56 Total: 50.78 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -33.74 -9.13 -42.87 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451299689.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.565 kcal (2) G-P(sol) polarization free energy of solvation -33.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.874 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds