Wall clock time and date at job start Tue Mar 31 2020 13:29:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.46821 * 2 1 4 4 C 1.52989 * 109.47394 * 120.00397 * 2 1 3 5 5 C 1.53004 * 109.47245 * 79.11008 * 4 2 1 6 6 C 1.53003 * 109.46996 * 65.74806 * 5 4 2 7 7 C 1.52993 * 109.47045 * 305.74647 * 5 4 2 8 8 C 1.52996 * 109.47053 * 185.74607 * 5 4 2 9 9 N 1.46499 * 109.47219 * 179.97438 * 8 5 4 10 10 S 1.65598 * 120.00049 * 165.27526 * 9 8 5 11 11 O 1.42102 * 104.27778 * 180.80102 * 10 9 8 12 12 O 1.42098 * 104.27763 * 308.65437 * 10 9 8 13 13 C 1.81398 * 104.44972 * 64.72857 * 10 9 8 14 14 C 1.53008 * 109.47223 * 180.18534 * 13 10 9 15 15 C 1.50695 * 115.54774 * 61.26348 * 14 13 10 16 16 H 1.08002 * 120.00702 * 264.62941 * 15 14 13 17 17 C 1.37879 * 120.00005 * 84.63118 * 15 14 13 18 18 N 1.31509 * 120.00322 * 177.06603 * 17 15 14 19 19 Si 1.86805 * 119.99666 * 357.06391 * 17 15 14 20 20 H 1.48498 * 109.47009 * 90.01691 * 19 17 15 21 21 H 1.48500 * 109.47013 * 210.01461 * 19 17 15 22 22 H 1.48493 * 109.47369 * 330.01753 * 19 17 15 23 23 C 1.52999 * 117.49813 * 275.59550 * 14 13 10 24 24 C 1.52994 * 117.49825 * 206.93882 * 14 13 10 25 25 H 1.08999 * 109.47184 * 162.19904 * 1 2 3 26 26 H 1.09000 * 109.46873 * 282.19324 * 1 2 3 27 27 H 1.08995 * 109.47597 * 42.19532 * 1 2 3 28 28 H 1.09007 * 109.46940 * 240.00554 * 2 1 3 29 29 H 1.09003 * 109.46912 * 180.02562 * 3 2 1 30 30 H 1.08998 * 109.47189 * 300.00620 * 3 2 1 31 31 H 1.08999 * 109.46721 * 60.00313 * 3 2 1 32 32 H 1.09001 * 109.47409 * 319.10673 * 4 2 1 33 33 H 1.09008 * 109.47439 * 199.10836 * 4 2 1 34 34 H 1.08997 * 109.47169 * 180.02562 * 6 5 4 35 35 H 1.08999 * 109.47112 * 300.00144 * 6 5 4 36 36 H 1.09002 * 109.47146 * 60.00171 * 6 5 4 37 37 H 1.08998 * 109.47163 * 321.21484 * 7 5 4 38 38 H 1.09005 * 109.46833 * 81.21189 * 7 5 4 39 39 H 1.08997 * 109.47427 * 201.21338 * 7 5 4 40 40 H 1.08999 * 109.47292 * 59.99804 * 8 5 4 41 41 H 1.09002 * 109.47447 * 300.00047 * 8 5 4 42 42 H 0.97000 * 120.00114 * 345.00756 * 9 8 5 43 43 H 1.08999 * 109.47071 * 300.18535 * 13 10 9 44 44 H 1.09003 * 109.46976 * 60.18827 * 13 10 9 45 45 H 0.96999 * 120.00353 * 180.02562 * 18 17 15 46 46 H 1.09006 * 117.49708 * 0.02562 * 23 14 13 47 47 H 1.09000 * 117.49866 * 145.01467 * 23 14 13 48 48 H 1.09000 * 117.49450 * 214.97844 * 24 14 13 49 49 H 1.08996 * 117.49883 * 359.96955 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7213 1.2491 5 6 1.9532 -2.2339 1.0358 6 6 2.9204 -2.6487 -0.0747 7 6 0.5254 -2.6113 0.6360 8 6 2.3268 -2.9541 2.3329 9 7 2.2430 -4.4024 2.1290 10 16 2.9324 -5.4342 3.2255 11 8 2.6729 -6.7287 2.6998 12 8 4.2624 -4.9552 3.3693 13 6 1.9908 -5.1668 4.7527 14 6 2.5421 -6.0713 5.8568 15 6 3.9833 -5.8371 6.2297 16 1 4.7615 -6.4372 5.7817 17 6 4.3085 -4.8566 7.1428 18 7 5.5598 -4.6904 7.5118 19 14 2.9716 -3.7640 7.8560 20 1 2.4303 -4.3862 9.0910 21 1 3.5421 -2.4322 8.1818 22 1 1.8796 -3.6052 6.8623 23 6 2.0210 -7.5085 5.9186 24 6 1.5825 -6.4890 6.9728 25 1 -0.3633 -0.9785 -0.3142 26 1 -0.3633 0.2171 1.0045 27 1 -0.3634 0.7613 -0.6902 28 1 1.8933 -0.5138 -0.8901 29 1 3.1300 1.4426 -0.0005 30 1 1.6765 1.9564 -0.8899 31 1 1.6766 1.9563 0.8900 32 1 1.4288 -0.4395 2.1065 33 1 3.0767 -0.4394 1.4337 34 1 2.8582 -3.7262 -0.2269 35 1 2.6543 -2.1356 -0.9988 36 1 3.9376 -2.3798 0.2102 37 1 -0.1826 -2.0095 1.2057 38 1 0.3854 -2.4259 -0.4290 39 1 0.3564 -3.6674 0.8462 40 1 1.6378 -2.6585 3.1241 41 1 3.3440 -2.6852 2.6179 42 1 1.7804 -4.7570 1.3537 43 1 2.0817 -4.1244 5.0578 44 1 0.9413 -5.4044 4.5787 45 1 5.7886 -4.0009 8.1545 46 1 1.2857 -7.8098 5.1725 47 1 2.7205 -8.2846 6.2294 48 1 1.9937 -6.5947 7.9767 49 1 0.5585 -6.1191 6.9207 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451299689.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:29:21 Heat of formation + Delta-G solvation = -88.231983 kcal Electronic energy + Delta-G solvation = -26442.135915 eV Core-core repulsion = 22916.834120 eV Total energy + Delta-G solvation = -3525.301795 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.181 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.06332 -38.83194 -37.95407 -36.79673 -36.27576 -34.28003 -33.12323 -30.10244 -29.18133 -27.88992 -27.58779 -27.06957 -26.30402 -23.33436 -21.38308 -21.22516 -20.26853 -19.74956 -18.64969 -18.40538 -17.23666 -16.88554 -16.87170 -16.33773 -15.87354 -15.70603 -15.46942 -14.90354 -14.83682 -14.55287 -14.53634 -14.23400 -14.06715 -13.95806 -13.39099 -13.19702 -13.06376 -12.93378 -12.89707 -12.85364 -12.62462 -12.59701 -12.42352 -12.36783 -12.31665 -12.06768 -11.74757 -11.69567 -11.66491 -11.60747 -11.39070 -11.13698 -10.98480 -10.90916 -10.70405 -10.50924 -10.07504 -8.29914 -6.43206 -0.53798 1.35328 1.36758 1.49239 2.05208 2.36444 2.89982 3.01697 3.16410 3.42667 3.68780 3.77512 3.89675 3.91273 4.16720 4.21484 4.22369 4.33968 4.35267 4.38595 4.51717 4.61259 4.63341 4.69206 4.77022 4.85721 4.87028 4.88045 4.93430 4.97308 5.02172 5.05828 5.07155 5.16961 5.18676 5.20788 5.24718 5.30642 5.38035 5.45198 5.51698 5.54820 5.62009 5.62541 5.67703 6.20307 6.21968 6.68202 7.29273 8.86806 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.015804 B = 0.004186 C = 0.003800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1771.297548 B = 6687.848487 C = 7367.209851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.094 4.094 3 C -0.148 4.148 4 C -0.107 4.107 5 C -0.062 4.062 6 C -0.147 4.147 7 C -0.150 4.150 8 C 0.111 3.889 9 N -1.109 6.109 10 S 2.619 3.381 11 O -0.998 6.998 12 O -0.992 6.992 13 C -0.574 4.574 14 C -0.034 4.034 15 C -0.510 4.510 16 H 0.026 0.974 17 C 0.027 3.973 18 N -0.943 5.943 19 Si 0.930 3.070 20 H -0.263 1.263 21 H -0.294 1.294 22 H -0.211 1.211 23 C -0.176 4.176 24 C -0.167 4.167 25 H 0.078 0.922 26 H 0.053 0.947 27 H 0.051 0.949 28 H 0.075 0.925 29 H 0.048 0.952 30 H 0.058 0.942 31 H 0.052 0.948 32 H 0.071 0.929 33 H 0.056 0.944 34 H 0.051 0.949 35 H 0.076 0.924 36 H 0.043 0.957 37 H 0.074 0.926 38 H 0.076 0.924 39 H 0.055 0.945 40 H 0.082 0.918 41 H 0.059 0.941 42 H 0.422 0.578 43 H 0.133 0.867 44 H 0.158 0.842 45 H 0.268 0.732 46 H 0.113 0.887 47 H 0.079 0.921 48 H 0.079 0.921 49 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.812 10.685 -14.839 24.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.112 4.112 3 C -0.206 4.206 4 C -0.145 4.145 5 C -0.063 4.063 6 C -0.205 4.205 7 C -0.207 4.207 8 C -0.015 4.015 9 N -0.872 5.872 10 S 2.716 3.284 11 O -0.989 6.989 12 O -0.981 6.981 13 C -0.706 4.706 14 C -0.036 4.036 15 C -0.548 4.548 16 H 0.045 0.955 17 C -0.172 4.172 18 N -0.581 5.581 19 Si 0.752 3.248 20 H -0.187 1.187 21 H -0.221 1.221 22 H -0.133 1.133 23 C -0.213 4.213 24 C -0.205 4.205 25 H 0.097 0.903 26 H 0.072 0.928 27 H 0.070 0.930 28 H 0.093 0.907 29 H 0.067 0.933 30 H 0.077 0.923 31 H 0.071 0.929 32 H 0.090 0.910 33 H 0.075 0.925 34 H 0.070 0.930 35 H 0.095 0.905 36 H 0.062 0.938 37 H 0.093 0.907 38 H 0.095 0.905 39 H 0.074 0.926 40 H 0.100 0.900 41 H 0.077 0.923 42 H 0.259 0.741 43 H 0.151 0.849 44 H 0.176 0.824 45 H 0.076 0.924 46 H 0.131 0.869 47 H 0.098 0.902 48 H 0.097 0.903 49 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -15.835 10.272 -14.794 23.982 hybrid contribution 0.111 0.443 0.793 0.916 sum -15.724 10.715 -14.001 23.623 Atomic orbital electron populations 1.22366 0.94613 1.03084 1.01789 1.21126 0.96461 0.95691 0.97921 1.21882 1.00676 0.96216 1.01812 1.21789 1.01501 0.92507 0.98721 1.20683 0.97091 0.95247 0.93294 1.21994 0.98546 1.01364 0.98554 1.22337 0.94319 1.01674 1.02402 1.21609 1.01766 0.78513 0.99615 1.55462 1.75282 1.16819 1.39677 1.04403 0.75007 0.72921 0.76089 1.93465 1.86584 1.40302 1.78511 1.93537 1.36848 1.81028 1.86715 1.30178 1.13994 1.09662 1.16773 1.18783 0.93339 0.94547 0.96963 1.20437 0.89791 1.19112 1.25427 0.95525 1.25936 0.97624 0.97918 0.95750 1.70067 1.20399 1.34273 1.33355 0.86043 0.80630 0.77297 0.80799 1.18742 1.22104 1.13329 1.23102 1.03298 0.92185 1.02700 1.23086 0.99292 1.03789 0.94347 0.90336 0.92791 0.93032 0.90692 0.93260 0.92261 0.92875 0.91000 0.92502 0.92977 0.90517 0.93825 0.90705 0.90520 0.92577 0.89969 0.92280 0.74064 0.84852 0.82423 0.92354 0.86897 0.90240 0.90259 0.86385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.80 7.88 71.98 0.57 -1.23 16 2 C -0.09 -1.23 2.55 -10.80 -0.03 -1.26 16 3 C -0.15 -1.96 9.03 71.98 0.65 -1.31 16 4 C -0.11 -1.72 3.90 30.59 0.12 -1.60 16 5 C -0.06 -1.09 0.57 -52.18 -0.03 -1.12 16 6 C -0.15 -2.80 8.01 71.98 0.58 -2.23 16 7 C -0.15 -2.00 6.77 71.98 0.49 -1.51 16 8 C 0.11 2.65 5.01 86.38 0.43 3.08 16 9 N -1.11 -29.58 5.08 -187.50 -0.95 -30.54 16 10 S 2.62 101.64 5.22 -56.49 -0.29 101.34 16 11 O -1.00 -42.19 18.08 -127.65 -2.31 -44.50 16 12 O -0.99 -49.96 16.68 -127.65 -2.13 -52.09 16 13 C -0.57 -20.38 5.60 71.98 0.40 -19.97 16 14 C -0.03 -1.49 0.84 -52.93 -0.04 -1.54 16 15 C -0.51 -29.47 8.24 25.60 0.21 -29.26 16 16 H 0.03 1.79 8.06 -2.91 -0.02 1.77 16 17 C 0.03 1.55 5.47 84.66 0.46 2.01 16 18 N -0.94 -60.18 13.96 21.45 0.30 -59.88 16 19 Si 0.93 41.73 25.16 68.60 1.73 43.45 16 20 H -0.26 -11.23 7.11 99.48 0.71 -10.52 16 21 H -0.29 -13.33 7.11 99.48 0.71 -12.63 16 22 H -0.21 -7.84 5.41 99.48 0.54 -7.31 16 23 C -0.18 -6.84 9.95 30.62 0.30 -6.53 16 24 C -0.17 -6.22 7.79 30.61 0.24 -5.98 16 25 H 0.08 0.77 4.58 -2.39 -0.01 0.76 16 26 H 0.05 0.61 7.68 -2.39 -0.02 0.59 16 27 H 0.05 0.54 8.01 -2.39 -0.02 0.52 16 28 H 0.07 0.98 5.99 -2.38 -0.01 0.96 16 29 H 0.05 0.69 8.13 -2.39 -0.02 0.67 16 30 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 31 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 32 H 0.07 1.09 7.73 -2.39 -0.02 1.07 16 33 H 0.06 1.04 7.99 -2.38 -0.02 1.02 16 34 H 0.05 1.04 7.20 -2.39 -0.02 1.02 16 35 H 0.08 1.14 6.26 -2.39 -0.01 1.13 16 36 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 37 H 0.07 0.86 6.47 -2.39 -0.02 0.85 16 38 H 0.08 0.84 6.31 -2.38 -0.02 0.82 16 39 H 0.06 0.75 6.26 -2.39 -0.01 0.74 16 40 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 41 H 0.06 1.71 7.71 -2.39 -0.02 1.69 16 42 H 0.42 9.12 6.46 -96.75 -0.63 8.50 16 43 H 0.13 4.53 6.04 -2.39 -0.01 4.51 16 44 H 0.16 3.97 8.11 -2.39 -0.02 3.95 16 45 H 0.27 15.86 8.31 -92.71 -0.77 15.09 16 46 H 0.11 3.66 8.14 -2.38 -0.02 3.64 16 47 H 0.08 3.29 8.14 -2.39 -0.02 3.27 16 48 H 0.08 3.18 7.58 -2.39 -0.02 3.16 16 49 H 0.12 3.43 8.14 -2.39 -0.02 3.41 16 Total: -1.00 -78.90 377.28 0.82 -78.08 By element: Atomic # 1 Polarization: 32.44 SS G_CDS: 0.13 Total: 32.57 kcal Atomic # 6 Polarization: -72.80 SS G_CDS: 4.35 Total: -68.45 kcal Atomic # 7 Polarization: -89.76 SS G_CDS: -0.65 Total: -90.42 kcal Atomic # 8 Polarization: -92.15 SS G_CDS: -4.44 Total: -96.58 kcal Atomic # 14 Polarization: 41.73 SS G_CDS: 1.73 Total: 43.45 kcal Atomic # 16 Polarization: 101.64 SS G_CDS: -0.29 Total: 101.34 kcal Total: -78.90 0.82 -78.08 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451299689.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.149 kcal (2) G-P(sol) polarization free energy of solvation -78.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.083 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds