Wall clock time and date at job start Tue Mar 31 2020 13:03:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53004 * 109.47155 * 2 1 4 4 C 1.53004 * 109.47229 * 119.99532 * 2 1 3 5 5 C 1.53001 * 109.46821 * 66.36313 * 4 2 1 6 6 C 1.52990 * 115.55050 * 268.03793 * 5 4 2 7 7 N 1.46499 * 109.47377 * 304.25211 * 6 5 4 8 8 S 1.65598 * 120.00422 * 159.63139 * 7 6 5 9 9 O 1.42097 * 104.28098 * 181.07539 * 8 7 6 10 10 O 1.42099 * 104.27708 * 308.93305 * 8 7 6 11 11 C 1.81402 * 104.44822 * 64.99997 * 8 7 6 12 12 C 1.53002 * 109.46771 * 180.02562 * 11 8 7 13 13 C 1.53000 * 109.47349 * 299.99780 * 12 11 8 14 14 C 1.52993 * 109.47372 * 60.00247 * 12 11 8 15 15 C 1.50702 * 109.46980 * 180.02562 * 12 11 8 16 16 H 1.08007 * 119.99586 * 359.97438 * 15 12 11 17 17 C 1.37877 * 120.00152 * 180.02562 * 15 12 11 18 18 N 1.31515 * 120.00095 * 359.97438 * 17 15 12 19 19 Si 1.86800 * 119.99712 * 179.97438 * 17 15 12 20 20 H 1.48501 * 109.47126 * 90.00330 * 19 17 15 21 21 H 1.48507 * 109.46905 * 209.99669 * 19 17 15 22 22 H 1.48495 * 109.47591 * 329.99775 * 19 17 15 23 23 C 1.52997 * 117.49715 * 122.32682 * 5 4 2 24 24 C 1.52996 * 60.00434 * 252.51267 * 23 5 4 25 25 H 1.08999 * 109.47141 * 290.85109 * 1 2 3 26 26 H 1.09003 * 109.46968 * 50.84833 * 1 2 3 27 27 H 1.08994 * 109.46643 * 170.85010 * 1 2 3 28 28 H 1.08995 * 109.47320 * 240.00105 * 2 1 3 29 29 H 1.08994 * 109.47476 * 180.02562 * 3 2 1 30 30 H 1.09001 * 109.46657 * 300.00211 * 3 2 1 31 31 H 1.09000 * 109.47191 * 59.99460 * 3 2 1 32 32 H 1.08998 * 109.47261 * 186.36312 * 4 2 1 33 33 H 1.08998 * 109.46861 * 306.36721 * 4 2 1 34 34 H 1.09003 * 109.47453 * 64.25620 * 6 5 4 35 35 H 1.09003 * 109.47202 * 184.25608 * 6 5 4 36 36 H 0.97004 * 119.99926 * 339.63401 * 7 6 5 37 37 H 1.08991 * 109.47162 * 300.00067 * 11 8 7 38 38 H 1.09007 * 109.46884 * 60.00695 * 11 8 7 39 39 H 1.09010 * 109.46874 * 60.00546 * 13 12 11 40 40 H 1.08997 * 109.47151 * 180.02562 * 13 12 11 41 41 H 1.08995 * 109.47688 * 300.00735 * 13 12 11 42 42 H 1.09005 * 109.47262 * 59.99652 * 14 12 11 43 43 H 1.09001 * 109.47483 * 179.97438 * 14 12 11 44 44 H 1.08996 * 109.47147 * 299.99906 * 14 12 11 45 45 H 0.96993 * 119.99654 * 179.97438 * 18 17 15 46 46 H 1.08999 * 117.50070 * 0.02562 * 23 5 4 47 47 H 1.09003 * 117.50223 * 145.01911 * 23 5 4 48 48 H 1.08997 * 117.50001 * 252.51393 * 24 23 5 49 49 H 1.09000 * 117.50430 * 107.48620 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 1.2493 5 6 1.6648 -2.2024 1.1720 6 6 0.3322 -2.5803 1.8218 7 7 0.3306 -2.1461 3.2209 8 16 -1.1033 -1.9536 4.0266 9 8 -0.7211 -1.5093 5.3211 10 8 -1.8794 -1.1286 3.1685 11 6 -1.8044 -3.6246 4.1083 12 6 -3.1481 -3.5787 4.8387 13 6 -2.9397 -3.0432 6.2567 14 6 -4.1086 -2.6590 4.0822 15 6 -3.7303 -4.9670 4.9071 16 1 -3.1956 -5.7988 4.4726 17 6 -4.9460 -5.1752 5.5233 18 7 -5.5973 -4.1622 6.0519 19 14 -5.6679 -6.8960 5.6074 20 1 -5.2046 -7.5670 6.8485 21 1 -7.1505 -6.8109 5.6147 22 1 -5.2227 -7.6779 4.4261 23 6 2.8015 -3.2239 1.2446 24 6 2.0826 -2.9725 -0.0824 25 1 -0.3633 0.3658 0.9603 26 1 -0.3633 0.6489 -0.7970 27 1 -0.3632 -1.0146 -0.1634 28 1 1.8934 -0.5138 -0.8899 29 1 3.1300 1.4426 -0.0005 30 1 1.6766 1.9563 -0.8900 31 1 1.6766 1.9564 0.8899 32 1 3.1241 -0.6236 1.3081 33 1 1.5867 -0.2773 2.1356 34 1 -0.4834 -2.0917 1.2888 35 1 0.1997 -3.6613 1.7768 36 1 1.1696 -1.9712 3.6755 37 1 -1.9533 -4.0059 3.0981 38 1 -1.1199 -4.2799 4.6469 39 1 -2.5184 -2.0390 6.2076 40 1 -3.8968 -3.0110 6.7772 41 1 -2.2554 -3.6983 6.7957 42 1 -4.2571 -3.0406 3.0720 43 1 -5.0660 -2.6267 4.6023 44 1 -3.6873 -1.6550 4.0331 45 1 -6.4526 -4.3087 6.4851 46 1 3.8167 -2.8407 1.3479 47 1 2.6003 -4.1654 1.7556 48 1 1.4084 -3.7486 -0.4444 49 1 2.6248 -2.4238 -0.8525 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451304998.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:03:15 Heat of formation + Delta-G solvation = -72.396482 kcal Electronic energy + Delta-G solvation = -26499.883404 eV Core-core repulsion = 22975.268288 eV Total energy + Delta-G solvation = -3524.615116 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.181 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -39.32453 -36.49744 -36.26231 -35.28493 -35.18134 -34.03605 -31.66189 -27.73684 -27.28325 -26.61078 -25.96784 -25.70711 -25.21256 -22.72209 -20.58248 -19.59411 -19.06395 -18.70087 -17.26928 -16.55138 -15.90310 -15.45497 -15.42376 -14.88248 -14.75392 -14.58522 -14.30829 -13.97948 -13.34915 -13.12308 -12.96223 -12.87114 -12.50007 -12.35313 -12.22712 -12.05462 -11.81509 -11.75250 -11.45756 -11.40863 -11.12991 -11.10710 -11.06299 -10.93346 -10.79516 -10.70025 -10.65538 -10.39553 -10.29245 -10.26130 -10.11788 -9.84990 -9.64658 -9.57184 -9.16540 -8.65949 -8.40032 -6.03330 -4.15334 0.89672 3.18079 3.25566 3.32880 3.34787 3.63832 4.31296 4.38742 4.43837 4.55961 4.63730 4.73973 4.86736 4.93775 4.97836 5.10423 5.22015 5.36602 5.44339 5.49157 5.59486 5.63698 5.67622 5.69315 5.72262 5.74052 5.83993 5.86000 5.92656 5.96680 6.04249 6.11578 6.15430 6.28682 6.38772 6.43131 6.71042 6.80510 6.91653 7.03702 7.19334 7.32313 7.51189 7.67944 7.98727 8.10052 8.33425 8.83121 9.50071 10.97969 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.021289 B = 0.003549 C = 0.003375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1314.911452 B = 7888.689481 C = 8294.157137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.094 4.094 3 C -0.149 4.149 4 C -0.081 4.081 5 C -0.128 4.128 6 C 0.149 3.851 7 N -1.126 6.126 8 S 2.594 3.406 9 O -0.966 6.966 10 O -0.962 6.962 11 C -0.583 4.583 12 C 0.082 3.918 13 C -0.164 4.164 14 C -0.163 4.163 15 C -0.502 4.502 16 H 0.058 0.942 17 C 0.064 3.936 18 N -0.883 5.883 19 Si 0.896 3.104 20 H -0.281 1.281 21 H -0.286 1.286 22 H -0.275 1.275 23 C -0.173 4.173 24 C -0.167 4.167 25 H 0.063 0.937 26 H 0.050 0.950 27 H 0.059 0.941 28 H 0.068 0.932 29 H 0.050 0.950 30 H 0.053 0.947 31 H 0.055 0.945 32 H 0.062 0.938 33 H 0.074 0.926 34 H 0.089 0.911 35 H 0.061 0.939 36 H 0.412 0.588 37 H 0.116 0.884 38 H 0.118 0.882 39 H 0.027 0.973 40 H 0.095 0.905 41 H 0.036 0.964 42 H 0.036 0.964 43 H 0.094 0.906 44 H 0.029 0.971 45 H 0.262 0.738 46 H 0.093 0.907 47 H 0.096 0.904 48 H 0.096 0.904 49 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.684 4.615 -11.626 20.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.112 4.112 3 C -0.206 4.206 4 C -0.118 4.118 5 C -0.130 4.130 6 C 0.022 3.978 7 N -0.883 5.883 8 S 2.692 3.308 9 O -0.957 6.957 10 O -0.952 6.952 11 C -0.717 4.717 12 C 0.080 3.920 13 C -0.221 4.221 14 C -0.221 4.221 15 C -0.542 4.542 16 H 0.076 0.924 17 C -0.137 4.137 18 N -0.521 5.521 19 Si 0.723 3.277 20 H -0.207 1.207 21 H -0.211 1.211 22 H -0.200 1.200 23 C -0.210 4.210 24 C -0.205 4.205 25 H 0.082 0.918 26 H 0.069 0.931 27 H 0.078 0.922 28 H 0.087 0.913 29 H 0.069 0.931 30 H 0.072 0.928 31 H 0.074 0.926 32 H 0.081 0.919 33 H 0.093 0.907 34 H 0.107 0.893 35 H 0.080 0.920 36 H 0.245 0.755 37 H 0.134 0.866 38 H 0.136 0.864 39 H 0.046 0.954 40 H 0.113 0.887 41 H 0.055 0.945 42 H 0.055 0.945 43 H 0.113 0.887 44 H 0.047 0.953 45 H 0.072 0.928 46 H 0.112 0.888 47 H 0.114 0.886 48 H 0.115 0.885 49 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 15.012 5.483 -11.314 19.581 hybrid contribution 0.064 -1.715 0.091 1.718 sum 15.076 3.768 -11.223 19.169 Atomic orbital electron populations 1.21975 0.94591 1.01986 1.02415 1.21133 0.96537 0.95590 0.97932 1.21863 1.00463 0.96384 1.01897 1.21231 1.00200 0.91587 0.98798 1.21610 0.95516 0.93832 1.02000 1.20910 0.96933 0.98792 0.81123 1.55779 1.25267 1.86271 1.20982 1.05569 0.72957 0.78829 0.73450 1.93551 1.81546 1.80906 1.39660 1.93537 1.69355 1.65155 1.67184 1.30534 1.11341 1.20110 1.09680 1.17923 0.85612 0.97535 0.90962 1.22273 1.03533 0.97162 0.99160 1.22264 1.04184 0.96042 0.99580 1.20949 1.04335 0.91823 1.37048 0.92353 1.24939 0.96750 0.96982 0.95076 1.69801 1.15151 1.29824 1.37374 0.86541 0.78286 0.84423 0.78408 1.20662 1.21126 1.19968 1.23149 0.96651 1.00420 1.00799 1.22996 1.03588 1.02752 0.91134 0.91775 0.93131 0.92216 0.91326 0.93066 0.92787 0.92578 0.91908 0.90701 0.89250 0.92031 0.75543 0.86594 0.86368 0.95381 0.88659 0.94519 0.94526 0.88708 0.95255 0.92751 0.88816 0.88571 0.88532 0.88514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.68 8.20 37.16 0.30 -1.37 16 2 C -0.09 -0.87 2.78 -90.61 -0.25 -1.12 16 3 C -0.15 -1.27 9.18 37.16 0.34 -0.92 16 4 C -0.08 -0.77 4.70 -26.73 -0.13 -0.90 16 5 C -0.13 -1.22 1.30 -154.51 -0.20 -1.42 16 6 C 0.15 1.74 5.79 -4.05 -0.02 1.71 16 7 N -1.13 -15.01 5.14 -10.62 -0.05 -15.07 16 8 S 2.59 47.25 4.49 -107.50 -0.48 46.77 16 9 O -0.97 -20.23 15.70 -57.54 -0.90 -21.13 16 10 O -0.96 -19.63 15.06 -57.54 -0.87 -20.49 16 11 C -0.58 -11.29 5.01 37.16 0.19 -11.10 16 12 C 0.08 1.98 0.52 -155.66 -0.08 1.90 16 13 C -0.16 -4.05 7.77 37.16 0.29 -3.76 16 14 C -0.16 -4.00 7.78 37.15 0.29 -3.71 16 15 C -0.50 -13.18 8.01 -34.44 -0.28 -13.46 16 16 H 0.06 1.49 7.74 -52.48 -0.41 1.08 16 17 C 0.06 1.71 5.15 -17.82 -0.09 1.62 16 18 N -0.88 -24.14 9.35 55.43 0.52 -23.62 16 19 Si 0.90 20.63 29.54 -169.99 -5.02 15.61 16 20 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 21 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 22 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 23 C -0.17 -1.43 9.87 -26.73 -0.26 -1.69 16 24 C -0.17 -1.34 9.35 -26.73 -0.25 -1.59 16 25 H 0.06 0.83 8.09 -51.93 -0.42 0.41 16 26 H 0.05 0.51 8.12 -51.93 -0.42 0.09 16 27 H 0.06 0.66 6.07 -51.93 -0.32 0.34 16 28 H 0.07 0.58 6.69 -51.93 -0.35 0.23 16 29 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 31 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.06 0.53 7.87 -51.93 -0.41 0.12 16 33 H 0.07 0.82 7.26 -51.93 -0.38 0.45 16 34 H 0.09 1.12 5.20 -51.93 -0.27 0.85 16 35 H 0.06 0.64 8.10 -51.93 -0.42 0.22 16 36 H 0.41 4.79 8.51 -34.47 -0.29 4.49 16 37 H 0.12 2.02 8.14 -51.93 -0.42 1.60 16 38 H 0.12 2.10 8.14 -51.92 -0.42 1.67 16 39 H 0.03 0.66 5.47 -51.92 -0.28 0.37 16 40 H 0.09 2.54 6.07 -51.93 -0.32 2.22 16 41 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 42 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 43 H 0.09 2.51 6.07 -51.93 -0.32 2.20 16 44 H 0.03 0.68 5.46 -51.93 -0.28 0.40 16 45 H 0.26 6.85 8.31 -40.82 -0.34 6.51 16 46 H 0.09 0.69 8.03 -51.93 -0.42 0.28 16 47 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 48 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 49 H 0.10 0.69 7.17 -51.93 -0.37 0.32 16 LS Contribution 379.53 15.07 5.72 5.72 Total: -1.00 -30.75 379.53 -9.85 -40.60 By element: Atomic # 1 Polarization: 16.04 SS G_CDS: -8.61 Total: 7.43 kcal Atomic # 6 Polarization: -35.66 SS G_CDS: -0.15 Total: -35.82 kcal Atomic # 7 Polarization: -39.15 SS G_CDS: 0.46 Total: -38.69 kcal Atomic # 8 Polarization: -39.85 SS G_CDS: -1.77 Total: -41.62 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.61 kcal Atomic # 16 Polarization: 47.25 SS G_CDS: -0.48 Total: 46.77 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -30.75 -9.85 -40.60 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451304998.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.793 kcal (2) G-P(sol) polarization free energy of solvation -30.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.604 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds