Wall clock time and date at job start Tue Mar 31 2020 13:03:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53004 * 109.47155 * 2 1 4 4 C 1.53004 * 109.47229 * 119.99532 * 2 1 3 5 5 C 1.53001 * 109.46821 * 66.36313 * 4 2 1 6 6 C 1.52990 * 115.55050 * 268.03793 * 5 4 2 7 7 N 1.46499 * 109.47377 * 304.25211 * 6 5 4 8 8 S 1.65598 * 120.00422 * 159.63139 * 7 6 5 9 9 O 1.42097 * 104.28098 * 181.07539 * 8 7 6 10 10 O 1.42099 * 104.27708 * 308.93305 * 8 7 6 11 11 C 1.81402 * 104.44822 * 64.99997 * 8 7 6 12 12 C 1.53002 * 109.46771 * 180.02562 * 11 8 7 13 13 C 1.53000 * 109.47349 * 299.99780 * 12 11 8 14 14 C 1.52993 * 109.47372 * 60.00247 * 12 11 8 15 15 C 1.50702 * 109.46980 * 180.02562 * 12 11 8 16 16 H 1.08007 * 119.99586 * 359.97438 * 15 12 11 17 17 C 1.37877 * 120.00152 * 180.02562 * 15 12 11 18 18 N 1.31515 * 120.00095 * 359.97438 * 17 15 12 19 19 Si 1.86800 * 119.99712 * 179.97438 * 17 15 12 20 20 H 1.48501 * 109.47126 * 90.00330 * 19 17 15 21 21 H 1.48507 * 109.46905 * 209.99669 * 19 17 15 22 22 H 1.48495 * 109.47591 * 329.99775 * 19 17 15 23 23 C 1.52997 * 117.49715 * 122.32682 * 5 4 2 24 24 C 1.52996 * 60.00434 * 252.51267 * 23 5 4 25 25 H 1.08999 * 109.47141 * 290.85109 * 1 2 3 26 26 H 1.09003 * 109.46968 * 50.84833 * 1 2 3 27 27 H 1.08994 * 109.46643 * 170.85010 * 1 2 3 28 28 H 1.08995 * 109.47320 * 240.00105 * 2 1 3 29 29 H 1.08994 * 109.47476 * 180.02562 * 3 2 1 30 30 H 1.09001 * 109.46657 * 300.00211 * 3 2 1 31 31 H 1.09000 * 109.47191 * 59.99460 * 3 2 1 32 32 H 1.08998 * 109.47261 * 186.36312 * 4 2 1 33 33 H 1.08998 * 109.46861 * 306.36721 * 4 2 1 34 34 H 1.09003 * 109.47453 * 64.25620 * 6 5 4 35 35 H 1.09003 * 109.47202 * 184.25608 * 6 5 4 36 36 H 0.97004 * 119.99926 * 339.63401 * 7 6 5 37 37 H 1.08991 * 109.47162 * 300.00067 * 11 8 7 38 38 H 1.09007 * 109.46884 * 60.00695 * 11 8 7 39 39 H 1.09010 * 109.46874 * 60.00546 * 13 12 11 40 40 H 1.08997 * 109.47151 * 180.02562 * 13 12 11 41 41 H 1.08995 * 109.47688 * 300.00735 * 13 12 11 42 42 H 1.09005 * 109.47262 * 59.99652 * 14 12 11 43 43 H 1.09001 * 109.47483 * 179.97438 * 14 12 11 44 44 H 1.08996 * 109.47147 * 299.99906 * 14 12 11 45 45 H 0.96993 * 119.99654 * 179.97438 * 18 17 15 46 46 H 1.08999 * 117.50070 * 0.02562 * 23 5 4 47 47 H 1.09003 * 117.50223 * 145.01911 * 23 5 4 48 48 H 1.08997 * 117.50001 * 252.51393 * 24 23 5 49 49 H 1.09000 * 117.50430 * 107.48620 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 1.2493 5 6 1.6648 -2.2024 1.1720 6 6 0.3322 -2.5803 1.8218 7 7 0.3306 -2.1461 3.2209 8 16 -1.1033 -1.9536 4.0266 9 8 -0.7211 -1.5093 5.3211 10 8 -1.8794 -1.1286 3.1685 11 6 -1.8044 -3.6246 4.1083 12 6 -3.1481 -3.5787 4.8387 13 6 -2.9397 -3.0432 6.2567 14 6 -4.1086 -2.6590 4.0822 15 6 -3.7303 -4.9670 4.9071 16 1 -3.1956 -5.7988 4.4726 17 6 -4.9460 -5.1752 5.5233 18 7 -5.5973 -4.1622 6.0519 19 14 -5.6679 -6.8960 5.6074 20 1 -5.2046 -7.5670 6.8485 21 1 -7.1505 -6.8109 5.6147 22 1 -5.2227 -7.6779 4.4261 23 6 2.8015 -3.2239 1.2446 24 6 2.0826 -2.9725 -0.0824 25 1 -0.3633 0.3658 0.9603 26 1 -0.3633 0.6489 -0.7970 27 1 -0.3632 -1.0146 -0.1634 28 1 1.8934 -0.5138 -0.8899 29 1 3.1300 1.4426 -0.0005 30 1 1.6766 1.9563 -0.8900 31 1 1.6766 1.9564 0.8899 32 1 3.1241 -0.6236 1.3081 33 1 1.5867 -0.2773 2.1356 34 1 -0.4834 -2.0917 1.2888 35 1 0.1997 -3.6613 1.7768 36 1 1.1696 -1.9712 3.6755 37 1 -1.9533 -4.0059 3.0981 38 1 -1.1199 -4.2799 4.6469 39 1 -2.5184 -2.0390 6.2076 40 1 -3.8968 -3.0110 6.7772 41 1 -2.2554 -3.6983 6.7957 42 1 -4.2571 -3.0406 3.0720 43 1 -5.0660 -2.6267 4.6023 44 1 -3.6873 -1.6550 4.0331 45 1 -6.4526 -4.3087 6.4851 46 1 3.8167 -2.8407 1.3479 47 1 2.6003 -4.1654 1.7556 48 1 1.4084 -3.7486 -0.4444 49 1 2.6248 -2.4238 -0.8525 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451304998.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:03:14 Heat of formation + Delta-G solvation = -90.602032 kcal Electronic energy + Delta-G solvation = -26500.672856 eV Core-core repulsion = 22975.268288 eV Total energy + Delta-G solvation = -3525.404568 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.181 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -40.06548 -38.12389 -38.06656 -36.86741 -35.97225 -35.02806 -33.63113 -28.54462 -28.22751 -28.09564 -27.69155 -27.26857 -26.85021 -23.33632 -21.47765 -21.22318 -20.20391 -19.85533 -18.69063 -17.88676 -17.51311 -16.91909 -16.63024 -16.47453 -15.80709 -15.68349 -15.18904 -14.96421 -14.79973 -14.60789 -14.41938 -14.08178 -13.86076 -13.79551 -13.39188 -13.06385 -13.05879 -12.97077 -12.88450 -12.79321 -12.72095 -12.50099 -12.38203 -12.21675 -12.16868 -12.12658 -11.96600 -11.84844 -11.60564 -11.56566 -11.41234 -11.35638 -11.00297 -10.70185 -10.54405 -10.41646 -10.15532 -8.03025 -6.21791 -0.58031 1.43932 1.45692 1.54350 1.92303 2.44149 2.86211 2.94401 3.19218 3.34585 3.71324 3.86742 3.90641 4.01262 4.07754 4.16605 4.20187 4.26698 4.37514 4.51027 4.60423 4.71686 4.82754 4.84195 4.86288 4.86849 4.91302 4.95643 4.99554 5.03005 5.04626 5.09251 5.13831 5.15104 5.24775 5.31169 5.37847 5.38689 5.41976 5.49930 5.50951 5.61903 5.64497 5.97362 6.11352 6.17144 6.34218 6.83055 7.46567 8.96832 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.021289 B = 0.003549 C = 0.003375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1314.911452 B = 7888.689481 C = 8294.157137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.090 4.090 3 C -0.149 4.149 4 C -0.081 4.081 5 C -0.141 4.141 6 C 0.138 3.862 7 N -1.108 6.108 8 S 2.614 3.386 9 O -0.996 6.996 10 O -0.987 6.987 11 C -0.587 4.587 12 C 0.069 3.931 13 C -0.160 4.160 14 C -0.158 4.158 15 C -0.518 4.518 16 H 0.063 0.937 17 C 0.017 3.983 18 N -0.908 5.908 19 Si 0.955 3.045 20 H -0.278 1.278 21 H -0.287 1.287 22 H -0.266 1.266 23 C -0.166 4.166 24 C -0.157 4.157 25 H 0.036 0.964 26 H 0.055 0.945 27 H 0.057 0.943 28 H 0.084 0.916 29 H 0.064 0.936 30 H 0.058 0.942 31 H 0.043 0.957 32 H 0.078 0.922 33 H 0.055 0.945 34 H 0.078 0.922 35 H 0.078 0.922 36 H 0.422 0.578 37 H 0.136 0.864 38 H 0.136 0.864 39 H 0.031 0.969 40 H 0.071 0.929 41 H 0.039 0.961 42 H 0.040 0.960 43 H 0.069 0.931 44 H 0.033 0.967 45 H 0.261 0.739 46 H 0.105 0.895 47 H 0.097 0.903 48 H 0.101 0.899 49 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.779 3.393 -13.257 22.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.109 4.109 3 C -0.206 4.206 4 C -0.118 4.118 5 C -0.142 4.142 6 C 0.013 3.987 7 N -0.869 5.869 8 S 2.711 3.289 9 O -0.986 6.986 10 O -0.977 6.977 11 C -0.720 4.720 12 C 0.067 3.933 13 C -0.218 4.218 14 C -0.216 4.216 15 C -0.557 4.557 16 H 0.081 0.919 17 C -0.182 4.182 18 N -0.547 5.547 19 Si 0.781 3.219 20 H -0.204 1.204 21 H -0.213 1.213 22 H -0.191 1.191 23 C -0.203 4.203 24 C -0.194 4.194 25 H 0.055 0.945 26 H 0.074 0.926 27 H 0.076 0.924 28 H 0.102 0.898 29 H 0.083 0.917 30 H 0.077 0.923 31 H 0.062 0.938 32 H 0.096 0.904 33 H 0.073 0.927 34 H 0.096 0.904 35 H 0.096 0.904 36 H 0.258 0.742 37 H 0.154 0.846 38 H 0.154 0.846 39 H 0.050 0.950 40 H 0.089 0.911 41 H 0.058 0.942 42 H 0.059 0.941 43 H 0.088 0.912 44 H 0.052 0.948 45 H 0.071 0.929 46 H 0.123 0.877 47 H 0.116 0.884 48 H 0.119 0.881 49 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 17.112 4.256 -12.940 21.871 hybrid contribution -0.550 -1.301 0.556 1.518 sum 16.561 2.955 -12.383 20.889 Atomic orbital electron populations 1.21977 0.96245 1.01809 1.01014 1.21131 0.95012 0.96214 0.98500 1.21865 1.01310 0.95857 1.01561 1.21227 1.00952 0.91635 0.98031 1.21493 0.94956 0.94094 1.03685 1.21160 0.98185 0.99667 0.79711 1.55291 1.23953 1.86027 1.21605 1.04673 0.73470 0.78005 0.72714 1.93502 1.82168 1.81312 1.41609 1.93504 1.70846 1.65719 1.67594 1.30469 1.09271 1.21771 1.10451 1.17918 0.87940 0.96512 0.90940 1.22209 1.02210 0.97599 0.99766 1.22187 1.03269 0.96666 0.99498 1.21306 1.04606 0.92902 1.36854 0.91860 1.25687 0.97331 1.00247 0.94975 1.69947 1.15300 1.31506 1.37929 0.85610 0.77293 0.80489 0.78546 1.20429 1.21279 1.19065 1.23226 0.96628 0.99766 1.00697 1.23096 1.03163 1.02199 0.90987 0.94519 0.92567 0.92376 0.89780 0.91705 0.92281 0.93816 0.90374 0.92674 0.90412 0.90365 0.74227 0.84621 0.84621 0.94993 0.91065 0.94211 0.94080 0.91187 0.94814 0.92946 0.87689 0.88434 0.88089 0.87269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.29 8.20 71.98 0.59 -2.70 16 2 C -0.09 -1.51 2.78 -10.79 -0.03 -1.54 16 3 C -0.15 -2.30 9.18 71.98 0.66 -1.64 16 4 C -0.08 -1.40 4.70 30.60 0.14 -1.25 16 5 C -0.14 -2.33 1.30 -52.18 -0.07 -2.40 16 6 C 0.14 2.98 5.79 86.38 0.50 3.48 16 7 N -1.11 -28.06 5.14 -187.50 -0.96 -29.03 16 8 S 2.61 93.90 4.49 -56.49 -0.25 93.64 16 9 O -1.00 -41.52 15.70 -127.65 -2.00 -43.52 16 10 O -0.99 -40.40 15.06 -127.65 -1.92 -42.33 16 11 C -0.59 -22.03 5.01 71.98 0.36 -21.67 16 12 C 0.07 3.33 0.52 -52.93 -0.03 3.30 16 13 C -0.16 -8.03 7.77 71.98 0.56 -7.47 16 14 C -0.16 -7.87 7.78 71.98 0.56 -7.32 16 15 C -0.52 -26.93 8.01 25.60 0.21 -26.72 16 16 H 0.06 3.15 7.74 -2.91 -0.02 3.13 16 17 C 0.02 0.90 5.15 84.65 0.44 1.33 16 18 N -0.91 -50.49 9.35 21.45 0.20 -50.29 16 19 Si 0.95 42.08 29.54 68.60 2.03 44.11 16 20 H -0.28 -12.09 7.11 99.48 0.71 -11.39 16 21 H -0.29 -12.61 7.11 99.48 0.71 -11.90 16 22 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 23 C -0.17 -2.18 9.87 30.59 0.30 -1.88 16 24 C -0.16 -1.99 9.35 30.60 0.29 -1.71 16 25 H 0.04 0.97 8.09 -2.39 -0.02 0.95 16 26 H 0.06 1.10 8.12 -2.39 -0.02 1.08 16 27 H 0.06 1.24 6.07 -2.39 -0.01 1.22 16 28 H 0.08 1.17 6.69 -2.39 -0.02 1.15 16 29 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 30 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.04 0.77 8.14 -2.39 -0.02 0.75 16 32 H 0.08 1.10 7.87 -2.39 -0.02 1.08 16 33 H 0.05 1.17 7.26 -2.39 -0.02 1.15 16 34 H 0.08 1.88 5.20 -2.39 -0.01 1.87 16 35 H 0.08 1.43 8.10 -2.39 -0.02 1.41 16 36 H 0.42 9.17 8.51 -96.74 -0.82 8.34 16 37 H 0.14 4.48 8.14 -2.39 -0.02 4.46 16 38 H 0.14 4.56 8.14 -2.39 -0.02 4.54 16 39 H 0.03 1.53 5.47 -2.38 -0.01 1.52 16 40 H 0.07 3.90 6.07 -2.39 -0.01 3.88 16 41 H 0.04 1.89 8.14 -2.39 -0.02 1.87 16 42 H 0.04 1.92 8.14 -2.38 -0.02 1.90 16 43 H 0.07 3.81 6.07 -2.39 -0.01 3.80 16 44 H 0.03 1.60 5.46 -2.39 -0.01 1.59 16 45 H 0.26 13.91 8.31 -92.71 -0.77 13.14 16 46 H 0.10 1.16 8.03 -2.39 -0.02 1.15 16 47 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 48 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 49 H 0.11 1.14 7.17 -2.39 -0.02 1.13 16 Total: -1.00 -65.94 379.53 1.66 -64.28 By element: Atomic # 1 Polarization: 31.22 SS G_CDS: 0.10 Total: 31.32 kcal Atomic # 6 Polarization: -72.66 SS G_CDS: 4.48 Total: -68.19 kcal Atomic # 7 Polarization: -78.56 SS G_CDS: -0.76 Total: -79.32 kcal Atomic # 8 Polarization: -81.92 SS G_CDS: -3.93 Total: -85.85 kcal Atomic # 14 Polarization: 42.08 SS G_CDS: 2.03 Total: 44.11 kcal Atomic # 16 Polarization: 93.90 SS G_CDS: -0.25 Total: 93.64 kcal Total: -65.94 1.66 -64.28 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451304998.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.325 kcal (2) G-P(sol) polarization free energy of solvation -65.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.277 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds