Wall clock time and date at job start Tue Mar 31 2020 13:29:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.46900 * 2 1 4 4 C 1.53003 * 109.47171 * 240.00607 * 2 1 3 5 5 C 1.52996 * 109.47295 * 120.00301 * 2 1 3 6 6 C 1.53002 * 109.46972 * 300.00002 * 5 2 1 7 7 C 1.53008 * 109.47154 * 180.02562 * 5 2 1 8 8 C 1.52994 * 109.47203 * 60.00067 * 5 2 1 9 9 N 1.46499 * 109.47081 * 179.97438 * 8 5 2 10 10 S 1.65598 * 119.99908 * 165.27567 * 9 8 5 11 11 O 1.42104 * 104.27853 * 180.79648 * 10 9 8 12 12 O 1.42097 * 104.27977 * 308.65351 * 10 9 8 13 13 C 1.81401 * 104.44942 * 64.72687 * 10 9 8 14 14 C 1.53004 * 109.47124 * 173.80914 * 13 10 9 15 15 C 1.50693 * 115.55085 * 65.19431 * 14 13 10 16 16 H 1.08004 * 119.99827 * 264.78193 * 15 14 13 17 17 C 1.37874 * 120.00327 * 84.78416 * 15 14 13 18 18 N 1.31516 * 119.99825 * 352.23443 * 17 15 14 19 19 Si 1.86803 * 120.00251 * 172.23174 * 17 15 14 20 20 H 1.48498 * 109.46898 * 90.00085 * 19 17 15 21 21 H 1.48499 * 109.46936 * 210.00057 * 19 17 15 22 22 H 1.48498 * 109.46925 * 330.00298 * 19 17 15 23 23 C 1.53000 * 117.49599 * 279.52028 * 14 13 10 24 24 C 1.53005 * 117.49779 * 210.86752 * 14 13 10 25 25 H 1.08999 * 109.47325 * 299.99380 * 1 2 3 26 26 H 1.08995 * 109.47493 * 60.00039 * 1 2 3 27 27 H 1.09003 * 109.46500 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47580 * 179.97438 * 3 2 1 29 29 H 1.09003 * 109.47347 * 300.00160 * 3 2 1 30 30 H 1.08999 * 109.46626 * 60.00192 * 3 2 1 31 31 H 1.09002 * 109.46848 * 299.99715 * 4 2 1 32 32 H 1.09003 * 109.47350 * 59.99671 * 4 2 1 33 33 H 1.09003 * 109.46919 * 180.02562 * 4 2 1 34 34 H 1.09003 * 109.47060 * 180.02562 * 6 5 2 35 35 H 1.09002 * 109.47196 * 299.99994 * 6 5 2 36 36 H 1.09001 * 109.47349 * 60.00363 * 6 5 2 37 37 H 1.09006 * 109.46626 * 300.00063 * 7 5 2 38 38 H 1.08997 * 109.46818 * 59.99446 * 7 5 2 39 39 H 1.08997 * 109.46980 * 180.02562 * 7 5 2 40 40 H 1.08998 * 109.47263 * 60.00271 * 8 5 2 41 41 H 1.08992 * 109.47407 * 299.99858 * 8 5 2 42 42 H 0.97001 * 120.00334 * 344.99946 * 9 8 5 43 43 H 1.08992 * 109.47101 * 293.80720 * 13 10 9 44 44 H 1.09002 * 109.47316 * 53.80841 * 13 10 9 45 45 H 0.97003 * 120.00122 * 185.03242 * 18 17 15 46 46 H 1.08999 * 117.50399 * 0.02562 * 23 14 13 47 47 H 1.09006 * 117.49780 * 145.01817 * 23 14 13 48 48 H 1.09000 * 117.49458 * 214.97918 * 24 14 13 49 49 H 1.09000 * 117.49939 * 359.97079 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7211 -1.2493 5 6 2.0400 -0.7213 1.2492 6 6 1.5300 -0.0001 2.4984 7 6 3.5701 -0.7207 1.2494 8 6 1.5301 -2.1637 1.2491 9 7 2.0190 -2.8546 2.4449 10 16 1.3438 -4.2956 2.9028 11 8 2.0428 -4.6492 4.0885 12 8 -0.0532 -4.0365 2.9257 13 6 1.7574 -5.4377 1.5555 14 6 1.3173 -6.8534 1.9338 15 6 -0.1689 -7.0547 2.0806 16 1 -0.6295 -6.9858 3.0550 17 6 -0.9406 -7.3269 0.9709 18 7 -0.4107 -7.2605 -0.2309 19 14 -2.7389 -7.7900 1.1746 20 1 -3.5726 -6.5615 1.1456 21 1 -3.1464 -8.6911 0.0668 22 1 -2.9269 -8.4853 2.4731 23 6 2.2337 -7.6538 2.8615 24 6 2.1369 -8.0200 1.3785 25 1 -0.3634 0.5137 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3632 -1.0277 -0.0005 28 1 3.1299 1.4427 0.0005 29 1 1.6766 1.9564 -0.8900 30 1 1.6766 1.9563 0.8900 31 1 1.6767 -1.7488 -1.2494 32 1 1.6767 -0.2073 -2.1393 33 1 3.1301 -0.7215 -1.2491 34 1 1.8938 -0.5137 3.3884 35 1 1.8934 1.0276 2.4985 36 1 0.4400 -0.0001 2.4985 37 1 3.9337 -1.2343 0.3593 38 1 3.9330 0.3071 1.2496 39 1 3.9334 -1.2350 2.1391 40 1 1.8935 -2.6776 0.3591 41 1 0.4402 -2.1638 1.2492 42 1 2.7409 -2.4699 2.9662 43 1 1.2427 -5.1282 0.6460 44 1 2.8341 -5.4250 1.3860 45 1 -0.9696 -7.3800 -1.0147 46 1 3.1498 -7.1717 3.2027 47 1 1.7615 -8.3262 3.5778 48 1 1.6010 -8.9332 1.1196 49 1 2.9892 -7.7790 0.7432 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451583101.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:29:35 Heat of formation + Delta-G solvation = -71.592633 kcal Electronic energy + Delta-G solvation = -26896.693580 eV Core-core repulsion = 23372.113322 eV Total energy + Delta-G solvation = -3524.580258 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.181 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -39.82513 -36.73575 -36.18677 -35.06388 -34.63825 -32.03091 -31.25217 -28.66418 -28.13327 -27.99366 -25.92151 -25.44359 -25.21062 -21.69911 -21.20063 -19.73538 -18.68677 -17.72306 -16.83794 -16.40025 -15.90061 -15.37695 -15.05091 -14.73144 -14.52506 -14.37401 -14.28040 -14.07438 -13.78729 -13.30693 -13.09568 -12.55848 -12.33672 -12.15501 -12.09111 -11.92057 -11.82677 -11.77820 -11.60211 -11.51710 -11.24782 -11.18905 -11.17412 -11.07351 -10.98161 -10.93033 -10.55883 -10.44038 -10.34008 -10.29898 -10.17265 -10.08874 -9.69892 -9.06640 -8.93918 -8.55043 -8.06978 -6.12945 -4.23078 1.13983 3.31443 3.36959 3.42235 3.54152 4.38267 4.50643 4.53612 4.62552 4.66749 5.03259 5.06078 5.11010 5.17034 5.19191 5.23405 5.35395 5.49475 5.56933 5.59929 5.61538 5.64248 5.71175 5.84225 5.86490 5.87392 5.88858 5.92737 5.94415 5.96496 6.02498 6.08227 6.12978 6.20376 6.28370 6.38084 6.41689 6.42380 6.48879 6.62911 6.73473 6.99734 7.25113 7.36549 7.40223 7.81546 8.22016 8.82191 9.47881 10.94754 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.015391 B = 0.004533 C = 0.004087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1818.752013 B = 6176.043983 C = 6849.540733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.056 4.056 3 C -0.143 4.143 4 C -0.151 4.151 5 C -0.058 4.058 6 C -0.147 4.147 7 C -0.147 4.147 8 C 0.121 3.879 9 N -1.131 6.131 10 S 2.608 3.392 11 O -0.977 6.977 12 O -0.951 6.951 13 C -0.554 4.554 14 C 0.043 3.957 15 C -0.515 4.515 16 H 0.068 0.932 17 C 0.082 3.918 18 N -0.875 5.875 19 Si 0.891 3.109 20 H -0.275 1.275 21 H -0.285 1.285 22 H -0.270 1.270 23 C -0.208 4.208 24 C -0.142 4.142 25 H 0.059 0.941 26 H 0.053 0.947 27 H 0.064 0.936 28 H 0.056 0.944 29 H 0.052 0.948 30 H 0.057 0.943 31 H 0.062 0.938 32 H 0.053 0.947 33 H 0.058 0.942 34 H 0.057 0.943 35 H 0.056 0.944 36 H 0.062 0.938 37 H 0.061 0.939 38 H 0.059 0.941 39 H 0.055 0.945 40 H 0.065 0.935 41 H 0.083 0.917 42 H 0.407 0.593 43 H 0.132 0.868 44 H 0.098 0.902 45 H 0.263 0.737 46 H 0.074 0.926 47 H 0.086 0.914 48 H 0.085 0.915 49 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.281 15.312 -1.928 17.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.057 4.057 3 C -0.200 4.200 4 C -0.208 4.208 5 C -0.059 4.059 6 C -0.204 4.204 7 C -0.205 4.205 8 C -0.005 4.005 9 N -0.889 5.889 10 S 2.705 3.295 11 O -0.968 6.968 12 O -0.940 6.940 13 C -0.687 4.687 14 C 0.041 3.959 15 C -0.552 4.552 16 H 0.086 0.914 17 C -0.122 4.122 18 N -0.511 5.511 19 Si 0.717 3.283 20 H -0.200 1.200 21 H -0.211 1.211 22 H -0.194 1.194 23 C -0.246 4.246 24 C -0.181 4.181 25 H 0.078 0.922 26 H 0.072 0.928 27 H 0.083 0.917 28 H 0.075 0.925 29 H 0.071 0.929 30 H 0.076 0.924 31 H 0.081 0.919 32 H 0.072 0.928 33 H 0.077 0.923 34 H 0.076 0.924 35 H 0.075 0.925 36 H 0.081 0.919 37 H 0.080 0.920 38 H 0.078 0.922 39 H 0.074 0.926 40 H 0.083 0.917 41 H 0.101 0.899 42 H 0.241 0.759 43 H 0.151 0.849 44 H 0.116 0.884 45 H 0.072 0.928 46 H 0.093 0.907 47 H 0.104 0.896 48 H 0.104 0.896 49 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 6.591 15.038 -1.426 16.480 hybrid contribution -0.271 -0.192 -0.591 0.678 sum 6.320 14.846 -2.017 16.261 Atomic orbital electron populations 1.22057 0.94428 1.02715 1.01737 1.20478 0.95738 0.95208 0.94261 1.21969 1.01022 0.95394 1.01611 1.22048 1.01186 1.00896 0.96655 1.20674 0.95774 0.94118 0.95381 1.21984 1.01772 0.99724 0.96884 1.22006 0.94492 1.01816 1.02143 1.21474 0.99909 0.92252 0.86873 1.55992 1.52935 1.40892 1.39069 1.05079 0.74428 0.73687 0.76352 1.93499 1.75214 1.83303 1.44746 1.93528 1.30889 1.82957 1.86676 1.29977 1.07534 1.12989 1.18244 1.18281 0.93020 0.85256 0.99339 1.20515 0.89349 1.50669 0.94659 0.91400 1.24941 0.98569 0.93690 0.95040 1.69980 1.35675 1.47921 0.97475 0.86593 0.84809 0.78814 0.78048 1.20044 1.21086 1.19427 1.23192 1.01394 1.06093 0.93887 1.22547 1.00916 1.01142 0.93468 0.92186 0.92773 0.91742 0.92456 0.92905 0.92399 0.91859 0.92756 0.92301 0.92420 0.92470 0.91928 0.92005 0.92248 0.92568 0.91724 0.89923 0.75916 0.84950 0.88351 0.92770 0.90708 0.89554 0.89612 0.91568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.56 7.77 37.16 0.29 -1.27 16 2 C -0.06 -0.53 0.35 -154.51 -0.05 -0.59 16 3 C -0.14 -1.15 7.77 37.16 0.29 -0.86 16 4 C -0.15 -1.43 7.77 37.16 0.29 -1.14 16 5 C -0.06 -0.61 0.12 -154.51 -0.02 -0.63 16 6 C -0.15 -1.54 7.60 37.16 0.28 -1.26 16 7 C -0.15 -1.36 7.60 37.16 0.28 -1.08 16 8 C 0.12 1.63 4.31 -4.04 -0.02 1.61 16 9 N -1.13 -16.85 5.22 -10.62 -0.06 -16.91 16 10 S 2.61 52.82 5.19 -107.50 -0.56 52.26 16 11 O -0.98 -21.64 18.08 -57.54 -1.04 -22.68 16 12 O -0.95 -22.70 17.18 -57.54 -0.99 -23.69 16 13 C -0.55 -11.64 5.92 37.16 0.22 -11.42 16 14 C 0.04 1.06 1.32 -155.66 -0.21 0.86 16 15 C -0.51 -14.13 8.18 -34.44 -0.28 -14.41 16 16 H 0.07 1.91 7.83 -52.48 -0.41 1.50 16 17 C 0.08 2.25 5.38 -17.82 -0.10 2.15 16 18 N -0.87 -23.99 12.98 55.43 0.72 -23.27 16 19 Si 0.89 21.41 29.55 -169.99 -5.02 16.39 16 20 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 21 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 22 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 23 C -0.21 -4.62 9.96 -26.70 -0.27 -4.89 16 24 C -0.14 -3.24 9.49 -26.69 -0.25 -3.49 16 25 H 0.06 0.59 6.43 -51.93 -0.33 0.26 16 26 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.06 0.75 6.43 -51.93 -0.33 0.41 16 28 H 0.06 0.43 6.43 -51.93 -0.33 0.10 16 29 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.06 0.45 6.43 -51.93 -0.33 0.12 16 31 H 0.06 0.66 6.43 -51.93 -0.33 0.33 16 32 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 33 H 0.06 0.51 6.43 -51.93 -0.33 0.18 16 34 H 0.06 0.63 7.20 -51.93 -0.37 0.26 16 35 H 0.06 0.50 6.43 -51.93 -0.33 0.17 16 36 H 0.06 0.70 6.43 -51.93 -0.33 0.36 16 37 H 0.06 0.56 6.43 -51.93 -0.33 0.22 16 38 H 0.06 0.48 6.43 -51.93 -0.33 0.14 16 39 H 0.06 0.52 6.60 -51.93 -0.34 0.17 16 40 H 0.06 0.82 6.43 -51.93 -0.33 0.49 16 41 H 0.08 1.23 5.99 -51.93 -0.31 0.92 16 42 H 0.41 5.19 6.44 -34.47 -0.22 4.96 16 43 H 0.13 2.87 8.14 -51.93 -0.42 2.45 16 44 H 0.10 1.75 8.09 -51.92 -0.42 1.33 16 45 H 0.26 6.86 8.32 -40.82 -0.34 6.52 16 46 H 0.07 1.51 8.14 -51.93 -0.42 1.09 16 47 H 0.09 1.89 8.14 -51.93 -0.42 1.47 16 48 H 0.09 2.07 8.14 -51.93 -0.42 1.64 16 49 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 LS Contribution 379.37 15.07 5.72 5.72 Total: -1.00 -31.90 379.37 -9.04 -40.94 By element: Atomic # 1 Polarization: 15.91 SS G_CDS: -8.27 Total: 7.64 kcal Atomic # 6 Polarization: -36.87 SS G_CDS: 0.46 Total: -36.41 kcal Atomic # 7 Polarization: -40.84 SS G_CDS: 0.66 Total: -40.17 kcal Atomic # 8 Polarization: -44.34 SS G_CDS: -2.03 Total: -46.36 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Atomic # 16 Polarization: 52.82 SS G_CDS: -0.56 Total: 52.26 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -31.90 -9.04 -40.94 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451583101.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.651 kcal (2) G-P(sol) polarization free energy of solvation -31.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.942 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds