Wall clock time and date at job start Tue Mar 31 2020 13:29:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.46900 * 2 1 4 4 C 1.53003 * 109.47171 * 240.00607 * 2 1 3 5 5 C 1.52996 * 109.47295 * 120.00301 * 2 1 3 6 6 C 1.53002 * 109.46972 * 300.00002 * 5 2 1 7 7 C 1.53008 * 109.47154 * 180.02562 * 5 2 1 8 8 C 1.52994 * 109.47203 * 60.00067 * 5 2 1 9 9 N 1.46499 * 109.47081 * 179.97438 * 8 5 2 10 10 S 1.65598 * 119.99908 * 165.27567 * 9 8 5 11 11 O 1.42104 * 104.27853 * 180.79648 * 10 9 8 12 12 O 1.42097 * 104.27977 * 308.65351 * 10 9 8 13 13 C 1.81401 * 104.44942 * 64.72687 * 10 9 8 14 14 C 1.53004 * 109.47124 * 173.80914 * 13 10 9 15 15 C 1.50693 * 115.55085 * 65.19431 * 14 13 10 16 16 H 1.08004 * 119.99827 * 264.78193 * 15 14 13 17 17 C 1.37874 * 120.00327 * 84.78416 * 15 14 13 18 18 N 1.31516 * 119.99825 * 352.23443 * 17 15 14 19 19 Si 1.86803 * 120.00251 * 172.23174 * 17 15 14 20 20 H 1.48498 * 109.46898 * 90.00085 * 19 17 15 21 21 H 1.48499 * 109.46936 * 210.00057 * 19 17 15 22 22 H 1.48498 * 109.46925 * 330.00298 * 19 17 15 23 23 C 1.53000 * 117.49599 * 279.52028 * 14 13 10 24 24 C 1.53005 * 117.49779 * 210.86752 * 14 13 10 25 25 H 1.08999 * 109.47325 * 299.99380 * 1 2 3 26 26 H 1.08995 * 109.47493 * 60.00039 * 1 2 3 27 27 H 1.09003 * 109.46500 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47580 * 179.97438 * 3 2 1 29 29 H 1.09003 * 109.47347 * 300.00160 * 3 2 1 30 30 H 1.08999 * 109.46626 * 60.00192 * 3 2 1 31 31 H 1.09002 * 109.46848 * 299.99715 * 4 2 1 32 32 H 1.09003 * 109.47350 * 59.99671 * 4 2 1 33 33 H 1.09003 * 109.46919 * 180.02562 * 4 2 1 34 34 H 1.09003 * 109.47060 * 180.02562 * 6 5 2 35 35 H 1.09002 * 109.47196 * 299.99994 * 6 5 2 36 36 H 1.09001 * 109.47349 * 60.00363 * 6 5 2 37 37 H 1.09006 * 109.46626 * 300.00063 * 7 5 2 38 38 H 1.08997 * 109.46818 * 59.99446 * 7 5 2 39 39 H 1.08997 * 109.46980 * 180.02562 * 7 5 2 40 40 H 1.08998 * 109.47263 * 60.00271 * 8 5 2 41 41 H 1.08992 * 109.47407 * 299.99858 * 8 5 2 42 42 H 0.97001 * 120.00334 * 344.99946 * 9 8 5 43 43 H 1.08992 * 109.47101 * 293.80720 * 13 10 9 44 44 H 1.09002 * 109.47316 * 53.80841 * 13 10 9 45 45 H 0.97003 * 120.00122 * 185.03242 * 18 17 15 46 46 H 1.08999 * 117.50399 * 0.02562 * 23 14 13 47 47 H 1.09006 * 117.49780 * 145.01817 * 23 14 13 48 48 H 1.09000 * 117.49458 * 214.97918 * 24 14 13 49 49 H 1.09000 * 117.49939 * 359.97079 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7211 -1.2493 5 6 2.0400 -0.7213 1.2492 6 6 1.5300 -0.0001 2.4984 7 6 3.5701 -0.7207 1.2494 8 6 1.5301 -2.1637 1.2491 9 7 2.0190 -2.8546 2.4449 10 16 1.3438 -4.2956 2.9028 11 8 2.0428 -4.6492 4.0885 12 8 -0.0532 -4.0365 2.9257 13 6 1.7574 -5.4377 1.5555 14 6 1.3173 -6.8534 1.9338 15 6 -0.1689 -7.0547 2.0806 16 1 -0.6295 -6.9858 3.0550 17 6 -0.9406 -7.3269 0.9709 18 7 -0.4107 -7.2605 -0.2309 19 14 -2.7389 -7.7900 1.1746 20 1 -3.5726 -6.5615 1.1456 21 1 -3.1464 -8.6911 0.0668 22 1 -2.9269 -8.4853 2.4731 23 6 2.2337 -7.6538 2.8615 24 6 2.1369 -8.0200 1.3785 25 1 -0.3634 0.5137 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3632 -1.0277 -0.0005 28 1 3.1299 1.4427 0.0005 29 1 1.6766 1.9564 -0.8900 30 1 1.6766 1.9563 0.8900 31 1 1.6767 -1.7488 -1.2494 32 1 1.6767 -0.2073 -2.1393 33 1 3.1301 -0.7215 -1.2491 34 1 1.8938 -0.5137 3.3884 35 1 1.8934 1.0276 2.4985 36 1 0.4400 -0.0001 2.4985 37 1 3.9337 -1.2343 0.3593 38 1 3.9330 0.3071 1.2496 39 1 3.9334 -1.2350 2.1391 40 1 1.8935 -2.6776 0.3591 41 1 0.4402 -2.1638 1.2492 42 1 2.7409 -2.4699 2.9662 43 1 1.2427 -5.1282 0.6460 44 1 2.8341 -5.4250 1.3860 45 1 -0.9696 -7.3800 -1.0147 46 1 3.1498 -7.1717 3.2027 47 1 1.7615 -8.3262 3.5778 48 1 1.6010 -8.9332 1.1196 49 1 2.9892 -7.7790 0.7432 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451583101.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:29:33 Heat of formation + Delta-G solvation = -91.821170 kcal Electronic energy + Delta-G solvation = -26897.570755 eV Core-core repulsion = 23372.113322 eV Total energy + Delta-G solvation = -3525.457433 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.181 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.67329 -38.56669 -37.91788 -36.78032 -35.76758 -34.08744 -32.16957 -29.84649 -29.43444 -28.78913 -27.49055 -26.69451 -26.17373 -22.99779 -22.55468 -21.53492 -20.27014 -18.90300 -18.36507 -18.00466 -17.16789 -16.82069 -16.68431 -16.22523 -15.98632 -15.59898 -15.42782 -15.04850 -14.93075 -14.83148 -14.26170 -13.76803 -13.67397 -13.39191 -13.23977 -13.12029 -13.03820 -12.94638 -12.89092 -12.87034 -12.85275 -12.55398 -12.50186 -12.45716 -12.42750 -12.21490 -12.09166 -11.92314 -11.88920 -11.55592 -11.13008 -11.08523 -11.02820 -10.87581 -10.55247 -10.38000 -9.84880 -8.19712 -6.33992 -0.48227 1.37549 1.40128 1.48581 2.07883 2.39166 2.95077 3.07730 3.38158 3.46321 3.68596 3.79312 3.84359 3.98958 4.24236 4.26464 4.32152 4.38778 4.47533 4.53107 4.59536 4.60806 4.75864 4.83054 4.84966 4.87356 4.89448 4.91322 4.97379 5.04727 5.10255 5.11496 5.17393 5.19402 5.20338 5.21671 5.26263 5.33559 5.34743 5.46935 5.58031 5.58439 5.68263 5.70523 5.71401 6.21207 6.23073 6.71692 7.38069 8.87342 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.015391 B = 0.004533 C = 0.004087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1818.752013 B = 6176.043983 C = 6849.540733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.054 4.054 3 C -0.139 4.139 4 C -0.152 4.152 5 C -0.053 4.053 6 C -0.149 4.149 7 C -0.148 4.148 8 C 0.113 3.887 9 N -1.110 6.110 10 S 2.624 3.376 11 O -0.997 6.997 12 O -0.994 6.994 13 C -0.551 4.551 14 C 0.010 3.990 15 C -0.534 4.534 16 H 0.047 0.953 17 C 0.044 3.956 18 N -0.891 5.891 19 Si 0.933 3.067 20 H -0.277 1.277 21 H -0.272 1.272 22 H -0.269 1.269 23 C -0.197 4.197 24 C -0.138 4.138 25 H 0.060 0.940 26 H 0.063 0.937 27 H 0.042 0.958 28 H 0.067 0.933 29 H 0.058 0.942 30 H 0.060 0.940 31 H 0.046 0.954 32 H 0.060 0.940 33 H 0.070 0.930 34 H 0.050 0.950 35 H 0.078 0.922 36 H 0.049 0.951 37 H 0.065 0.935 38 H 0.077 0.923 39 H 0.056 0.944 40 H 0.073 0.927 41 H 0.062 0.938 42 H 0.420 0.580 43 H 0.122 0.878 44 H 0.133 0.867 45 H 0.265 0.735 46 H 0.099 0.901 47 H 0.081 0.919 48 H 0.066 0.934 49 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.950 16.802 -2.490 19.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.054 4.054 3 C -0.196 4.196 4 C -0.209 4.209 5 C -0.054 4.054 6 C -0.206 4.206 7 C -0.205 4.205 8 C -0.013 4.013 9 N -0.873 5.873 10 S 2.721 3.279 11 O -0.988 6.988 12 O -0.984 6.984 13 C -0.684 4.684 14 C 0.007 3.993 15 C -0.571 4.571 16 H 0.065 0.935 17 C -0.159 4.159 18 N -0.527 5.527 19 Si 0.759 3.241 20 H -0.203 1.203 21 H -0.197 1.197 22 H -0.194 1.194 23 C -0.234 4.234 24 C -0.177 4.177 25 H 0.079 0.921 26 H 0.082 0.918 27 H 0.061 0.939 28 H 0.086 0.914 29 H 0.077 0.923 30 H 0.079 0.921 31 H 0.066 0.934 32 H 0.079 0.921 33 H 0.089 0.911 34 H 0.069 0.931 35 H 0.097 0.903 36 H 0.069 0.931 37 H 0.084 0.916 38 H 0.096 0.904 39 H 0.075 0.925 40 H 0.091 0.909 41 H 0.080 0.920 42 H 0.257 0.743 43 H 0.140 0.860 44 H 0.151 0.849 45 H 0.075 0.925 46 H 0.117 0.883 47 H 0.100 0.900 48 H 0.085 0.915 49 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 8.269 16.518 -1.976 18.578 hybrid contribution -0.785 -0.624 -0.414 1.085 sum 7.484 15.894 -2.391 17.730 Atomic orbital electron populations 1.22082 0.95409 1.01461 1.02250 1.20471 0.94949 0.96310 0.93707 1.21939 1.01653 0.93894 1.02126 1.22063 1.01915 1.00004 0.96917 1.20669 0.96919 0.91867 0.95981 1.22023 1.01091 1.00982 0.96552 1.22036 0.92969 1.03142 1.02395 1.21699 0.98985 0.94437 0.86213 1.55455 1.53006 1.39035 1.39788 1.04299 0.73493 0.74328 0.75814 1.93458 1.75245 1.84165 1.45895 1.93475 1.33842 1.83858 1.87205 1.29861 1.09572 1.11189 1.17792 1.18422 0.92006 0.87315 1.01512 1.20682 0.91520 1.51060 0.93883 0.93470 1.25493 1.01560 0.93816 0.95008 1.70018 1.36621 1.48400 0.97699 0.85926 0.81338 0.78565 0.78303 1.20314 1.19721 1.19405 1.23242 1.01567 1.05179 0.93430 1.22507 1.01039 0.99734 0.94388 0.92130 0.91834 0.93886 0.91381 0.92283 0.92079 0.93445 0.92060 0.91132 0.93076 0.90313 0.93147 0.91580 0.90428 0.92528 0.90868 0.91960 0.74253 0.85999 0.84882 0.92533 0.88296 0.89999 0.91544 0.89337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.10 7.77 71.98 0.56 -2.54 16 2 C -0.05 -0.93 0.35 -52.18 -0.02 -0.94 16 3 C -0.14 -1.83 7.77 71.98 0.56 -1.27 16 4 C -0.15 -2.61 7.77 71.98 0.56 -2.05 16 5 C -0.05 -1.02 0.12 -52.18 -0.01 -1.02 16 6 C -0.15 -2.91 7.60 71.98 0.55 -2.36 16 7 C -0.15 -2.30 7.60 71.98 0.55 -1.75 16 8 C 0.11 2.97 4.31 86.38 0.37 3.34 16 9 N -1.11 -32.10 5.22 -187.51 -0.98 -33.08 16 10 S 2.62 106.08 5.19 -56.49 -0.29 105.79 16 11 O -1.00 -43.56 18.08 -127.65 -2.31 -45.86 16 12 O -0.99 -48.77 17.18 -127.65 -2.19 -50.96 16 13 C -0.55 -22.75 5.92 71.98 0.43 -22.32 16 14 C 0.01 0.47 1.32 -52.93 -0.07 0.40 16 15 C -0.53 -29.85 8.18 25.60 0.21 -29.64 16 16 H 0.05 2.75 7.83 -2.91 -0.02 2.73 16 17 C 0.04 2.44 5.38 84.65 0.46 2.89 16 18 N -0.89 -49.12 12.98 21.45 0.28 -48.84 16 19 Si 0.93 44.28 29.55 68.60 2.03 46.31 16 20 H -0.28 -13.18 7.11 99.48 0.71 -12.48 16 21 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 22 H -0.27 -12.64 7.11 99.48 0.71 -11.94 16 23 C -0.20 -8.53 9.96 30.62 0.30 -8.22 16 24 C -0.14 -6.18 9.49 30.62 0.29 -5.89 16 25 H 0.06 1.18 6.43 -2.39 -0.02 1.16 16 26 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 27 H 0.04 1.03 6.43 -2.39 -0.02 1.01 16 28 H 0.07 0.77 6.43 -2.39 -0.02 0.75 16 29 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 30 H 0.06 0.77 6.43 -2.39 -0.02 0.76 16 31 H 0.05 0.96 6.43 -2.39 -0.02 0.94 16 32 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 33 H 0.07 1.04 6.43 -2.39 -0.02 1.02 16 34 H 0.05 1.05 7.20 -2.39 -0.02 1.03 16 35 H 0.08 1.18 6.43 -2.39 -0.02 1.17 16 36 H 0.05 1.10 6.43 -2.39 -0.02 1.08 16 37 H 0.07 0.99 6.43 -2.38 -0.02 0.97 16 38 H 0.08 0.95 6.43 -2.39 -0.02 0.93 16 39 H 0.06 0.88 6.60 -2.39 -0.02 0.86 16 40 H 0.07 1.81 6.43 -2.39 -0.02 1.79 16 41 H 0.06 1.92 5.99 -2.39 -0.01 1.91 16 42 H 0.42 10.02 6.44 -96.75 -0.62 9.39 16 43 H 0.12 5.30 8.14 -2.39 -0.02 5.28 16 44 H 0.13 4.42 8.09 -2.39 -0.02 4.40 16 45 H 0.27 13.89 8.32 -92.71 -0.77 13.12 16 46 H 0.10 3.77 8.14 -2.39 -0.02 3.75 16 47 H 0.08 3.56 8.14 -2.38 -0.02 3.55 16 48 H 0.07 3.20 8.14 -2.39 -0.02 3.18 16 49 H 0.09 3.52 8.14 -2.39 -0.02 3.50 16 Total: -1.00 -68.55 379.37 1.58 -66.97 By element: Atomic # 1 Polarization: 30.76 SS G_CDS: 0.31 Total: 31.07 kcal Atomic # 6 Polarization: -76.13 SS G_CDS: 4.74 Total: -71.39 kcal Atomic # 7 Polarization: -81.22 SS G_CDS: -0.70 Total: -81.92 kcal Atomic # 8 Polarization: -92.33 SS G_CDS: -4.50 Total: -96.83 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 2.03 Total: 46.31 kcal Atomic # 16 Polarization: 106.08 SS G_CDS: -0.29 Total: 105.79 kcal Total: -68.55 1.58 -66.97 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451583101.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.856 kcal (2) G-P(sol) polarization free energy of solvation -68.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.965 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds